Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05184

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05183 and MPMX19_05184 are separated by 9 nucleotidesMPMX19_05184 and MPMX19_05185 are separated by 9 nucleotides MPMX19_05183: MPMX19_05183 - Putative aliphatic sulfonates-binding protein, at 686,362 to 687,354 _05183 MPMX19_05184: MPMX19_05184 - (R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase, at 687,364 to 688,242 _05184 MPMX19_05185: MPMX19_05185 - hypothetical protein, at 688,252 to 689,301 _05185 Position (kb) 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 686.576 kb on + strand, within MPMX19_05183at 686.576 kb on + strand, within MPMX19_05183at 686.603 kb on - strand, within MPMX19_05183at 686.684 kb on + strand, within MPMX19_05183at 686.684 kb on + strand, within MPMX19_05183at 686.685 kb on - strand, within MPMX19_05183at 686.685 kb on - strand, within MPMX19_05183at 686.685 kb on - strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.759 kb on + strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.760 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 686.892 kb on - strand, within MPMX19_05183at 687.072 kb on - strand, within MPMX19_05183at 687.149 kb on + strand, within MPMX19_05183at 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.365 kb on + strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.366 kb on - strandat 687.723 kb on - strand, within MPMX19_05184at 687.896 kb on + strand, within MPMX19_05184at 687.897 kb on - strand, within MPMX19_05184at 687.897 kb on - strand, within MPMX19_05184at 687.897 kb on - strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 687.980 kb on + strand, within MPMX19_05184at 688.380 kb on - strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.451 kb on + strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.452 kb on - strand, within MPMX19_05185at 688.605 kb on - strand, within MPMX19_05185at 688.605 kb on - strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.814 kb on + strand, within MPMX19_05185at 688.815 kb on - strand, within MPMX19_05185at 688.815 kb on - strand, within MPMX19_05185at 688.843 kb on - strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.901 kb on + strand, within MPMX19_05185at 688.902 kb on - strand, within MPMX19_05185at 688.960 kb on - strand, within MPMX19_05185at 688.974 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.075 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.147 kb on + strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.148 kb on - strand, within MPMX19_05185at 689.159 kb on + strand, within MPMX19_05185at 689.159 kb on + strand, within MPMX19_05185at 689.160 kb on - strand, within MPMX19_05185

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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686,576 + MPMX19_05183 0.22 +0.6
686,576 + MPMX19_05183 0.22 -0.1
686,603 - MPMX19_05183 0.24 -1.7
686,684 + MPMX19_05183 0.32 -1.0
686,684 + MPMX19_05183 0.32 -1.0
686,685 - MPMX19_05183 0.33 -1.6
686,685 - MPMX19_05183 0.33 -1.4
686,685 - MPMX19_05183 0.33 +0.2
686,759 + MPMX19_05183 0.40 +0.3
686,759 + MPMX19_05183 0.40 +0.4
686,759 + MPMX19_05183 0.40 -0.4
686,759 + MPMX19_05183 0.40 -3.1
686,759 + MPMX19_05183 0.40 +0.7
686,759 + MPMX19_05183 0.40 -1.1
686,759 + MPMX19_05183 0.40 -0.3
686,759 + MPMX19_05183 0.40 +0.1
686,759 + MPMX19_05183 0.40 -0.9
686,759 + MPMX19_05183 0.40 +0.6
686,759 + MPMX19_05183 0.40 -1.0
686,759 + MPMX19_05183 0.40 -0.1
686,759 + MPMX19_05183 0.40 +0.0
686,759 + MPMX19_05183 0.40 -0.1
686,759 + MPMX19_05183 0.40 -2.5
686,759 + MPMX19_05183 0.40 +0.6
686,759 + MPMX19_05183 0.40 -1.5
686,759 + MPMX19_05183 0.40 +0.1
686,759 + MPMX19_05183 0.40 -0.9
686,759 + MPMX19_05183 0.40 +1.4
686,759 + MPMX19_05183 0.40 +0.3
686,759 + MPMX19_05183 0.40 -0.8
686,760 - MPMX19_05183 0.40 -0.7
686,760 - MPMX19_05183 0.40 +0.4
686,760 - MPMX19_05183 0.40 -0.1
686,760 - MPMX19_05183 0.40 +1.6
686,760 - MPMX19_05183 0.40 -0.8
686,760 - MPMX19_05183 0.40 -1.8
686,760 - MPMX19_05183 0.40 +0.2
686,760 - MPMX19_05183 0.40 -1.3
686,760 - MPMX19_05183 0.40 -0.5
686,760 - MPMX19_05183 0.40 +0.8
686,760 - MPMX19_05183 0.40 +0.6
686,760 - MPMX19_05183 0.40 +0.4
686,760 - MPMX19_05183 0.40 -2.0
686,760 - MPMX19_05183 0.40 -1.1
686,760 - MPMX19_05183 0.40 +1.8
686,760 - MPMX19_05183 0.40 -0.6
686,760 - MPMX19_05183 0.40 -1.1
686,760 - MPMX19_05183 0.40 -1.2
686,760 - MPMX19_05183 0.40 +0.2
686,760 - MPMX19_05183 0.40 -1.3
686,760 - MPMX19_05183 0.40 -0.4
686,760 - MPMX19_05183 0.40 +0.0
686,760 - MPMX19_05183 0.40 -0.3
686,760 - MPMX19_05183 0.40 +0.9
686,760 - MPMX19_05183 0.40 -1.7
686,760 - MPMX19_05183 0.40 +0.2
686,760 - MPMX19_05183 0.40 -0.8
686,760 - MPMX19_05183 0.40 -0.8
686,760 - MPMX19_05183 0.40 +0.9
686,760 - MPMX19_05183 0.40 +0.4
686,760 - MPMX19_05183 0.40 +0.6
686,760 - MPMX19_05183 0.40 -0.7
686,892 - MPMX19_05183 0.53 +1.2
686,892 - MPMX19_05183 0.53 -1.3
686,892 - MPMX19_05183 0.53 +1.2
686,892 - MPMX19_05183 0.53 +0.0
686,892 - MPMX19_05183 0.53 +0.4
686,892 - MPMX19_05183 0.53 +0.6
686,892 - MPMX19_05183 0.53 -0.8
687,072 - MPMX19_05183 0.72 -1.0
687,149 + MPMX19_05183 0.79 +0.4
687,365 + +0.5
687,365 + +0.0
687,365 + -0.1
687,365 + -1.8
687,365 + -1.1
687,365 + +0.0
687,366 - +0.4
687,366 - +0.3
687,366 - -0.3
687,366 - -2.0
687,366 - -0.6
687,366 - +1.4
687,723 - MPMX19_05184 0.41 -1.7
687,896 + MPMX19_05184 0.61 +2.3
687,897 - MPMX19_05184 0.61 -0.2
687,897 - MPMX19_05184 0.61 +0.7
687,897 - MPMX19_05184 0.61 +0.2
687,980 + MPMX19_05184 0.70 -0.6
687,980 + MPMX19_05184 0.70 -1.7
687,980 + MPMX19_05184 0.70 -0.1
687,980 + MPMX19_05184 0.70 -0.5
687,980 + MPMX19_05184 0.70 +0.4
687,980 + MPMX19_05184 0.70 -2.0
687,980 + MPMX19_05184 0.70 -2.0
687,980 + MPMX19_05184 0.70 -1.7
687,980 + MPMX19_05184 0.70 -0.2
687,980 + MPMX19_05184 0.70 -1.1
687,980 + MPMX19_05184 0.70 -2.2
687,980 + MPMX19_05184 0.70 -0.3
687,980 + MPMX19_05184 0.70 -0.6
687,980 + MPMX19_05184 0.70 -3.4
687,980 + MPMX19_05184 0.70 -1.8
688,380 - MPMX19_05185 0.12 +1.0
688,451 + MPMX19_05185 0.19 -1.3
688,451 + MPMX19_05185 0.19 -0.7
688,451 + MPMX19_05185 0.19 -2.7
688,451 + MPMX19_05185 0.19 -1.8
688,452 - MPMX19_05185 0.19 -0.4
688,452 - MPMX19_05185 0.19 +0.0
688,452 - MPMX19_05185 0.19 -2.2
688,452 - MPMX19_05185 0.19 -1.1
688,452 - MPMX19_05185 0.19 +0.4
688,452 - MPMX19_05185 0.19 -0.3
688,452 - MPMX19_05185 0.19 -1.0
688,605 - MPMX19_05185 0.34 -1.3
688,605 - MPMX19_05185 0.34 -0.4
688,814 + MPMX19_05185 0.54 -1.8
688,814 + MPMX19_05185 0.54 +0.5
688,814 + MPMX19_05185 0.54 -1.3
688,815 - MPMX19_05185 0.54 -1.0
688,815 - MPMX19_05185 0.54 +0.5
688,843 - MPMX19_05185 0.56 -1.6
688,901 + MPMX19_05185 0.62 -0.6
688,901 + MPMX19_05185 0.62 -0.4
688,901 + MPMX19_05185 0.62 -0.6
688,901 + MPMX19_05185 0.62 -1.4
688,902 - MPMX19_05185 0.62 +1.0
688,960 - MPMX19_05185 0.67 -0.6
688,974 + MPMX19_05185 0.69 -1.1
689,075 + MPMX19_05185 0.78 -1.6
689,075 + MPMX19_05185 0.78 +0.2
689,075 + MPMX19_05185 0.78 +0.4
689,147 + MPMX19_05185 0.85 -0.3
689,147 + MPMX19_05185 0.85 -0.9
689,147 + MPMX19_05185 0.85 -0.1
689,147 + MPMX19_05185 0.85 -0.7
689,147 + MPMX19_05185 0.85 -0.3
689,147 + MPMX19_05185 0.85 +0.2
689,147 + MPMX19_05185 0.85 -2.1
689,147 + MPMX19_05185 0.85 -0.3
689,148 - MPMX19_05185 0.85 +0.6
689,148 - MPMX19_05185 0.85 +1.0
689,148 - MPMX19_05185 0.85 +0.3
689,148 - MPMX19_05185 0.85 +0.0
689,148 - MPMX19_05185 0.85 -0.6
689,148 - MPMX19_05185 0.85 -0.1
689,148 - MPMX19_05185 0.85 -0.8
689,148 - MPMX19_05185 0.85 -0.7
689,148 - MPMX19_05185 0.85 -0.4
689,148 - MPMX19_05185 0.85 -0.3
689,159 + MPMX19_05185 0.86 +0.4
689,159 + MPMX19_05185 0.86 -0.6
689,160 - MPMX19_05185 0.86 -0.3

Or see this region's nucleotide sequence