Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05155

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05154 and MPMX19_05155 are separated by 240 nucleotidesMPMX19_05155 and MPMX19_05156 are separated by 124 nucleotides MPMX19_05154: MPMX19_05154 - Isoleucine 2-epimerase, at 651,568 to 652,875 _05154 MPMX19_05155: MPMX19_05155 - hypothetical protein, at 653,116 to 654,681 _05155 MPMX19_05156: MPMX19_05156 - hypothetical protein, at 654,806 to 655,540 _05156 Position (kb) 653 654 655Strain fitness (log2 ratio) -2 -1 0 1 2at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.189 kb on + strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.190 kb on - strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.252 kb on + strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.253 kb on - strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.498 kb on + strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.499 kb on - strand, within MPMX19_05154at 652.738 kb on + strand, within MPMX19_05154at 652.739 kb on - strand, within MPMX19_05154at 652.945 kb on + strandat 652.945 kb on + strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 652.946 kb on - strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.037 kb on + strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.038 kb on - strandat 653.394 kb on + strand, within MPMX19_05155at 653.394 kb on + strand, within MPMX19_05155at 653.395 kb on - strand, within MPMX19_05155at 653.395 kb on - strand, within MPMX19_05155at 653.395 kb on - strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.805 kb on + strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 654.431 kb on + strand, within MPMX19_05155at 654.431 kb on + strand, within MPMX19_05155at 654.431 kb on + strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.550 kb on - strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.654 kb on + strandat 654.654 kb on + strandat 654.654 kb on + strandat 654.655 kb on - strandat 654.668 kb on + strandat 654.685 kb on + strandat 654.686 kb on - strandat 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.287 kb on + strand, within MPMX19_05156at 655.299 kb on + strand, within MPMX19_05156at 655.299 kb on + strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.443 kb on + strand, within MPMX19_05156at 655.444 kb on - strand, within MPMX19_05156at 655.444 kb on - strand, within MPMX19_05156at 655.478 kb on - strandat 655.561 kb on + strandat 655.561 kb on + strandat 655.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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652,189 + MPMX19_05154 0.47 -1.3
652,189 + MPMX19_05154 0.47 +1.0
652,189 + MPMX19_05154 0.47 +0.5
652,189 + MPMX19_05154 0.47 +0.5
652,189 + MPMX19_05154 0.47 -1.4
652,189 + MPMX19_05154 0.47 -0.8
652,189 + MPMX19_05154 0.47 -1.1
652,189 + MPMX19_05154 0.47 -0.1
652,190 - MPMX19_05154 0.48 -0.9
652,190 - MPMX19_05154 0.48 +0.1
652,190 - MPMX19_05154 0.48 -0.7
652,190 - MPMX19_05154 0.48 -1.0
652,190 - MPMX19_05154 0.48 -1.2
652,190 - MPMX19_05154 0.48 +0.5
652,190 - MPMX19_05154 0.48 +0.8
652,190 - MPMX19_05154 0.48 +1.0
652,252 + MPMX19_05154 0.52 +0.2
652,252 + MPMX19_05154 0.52 +1.0
652,252 + MPMX19_05154 0.52 +0.0
652,252 + MPMX19_05154 0.52 +0.2
652,252 + MPMX19_05154 0.52 -0.8
652,252 + MPMX19_05154 0.52 +0.2
652,252 + MPMX19_05154 0.52 +0.2
652,252 + MPMX19_05154 0.52 +1.3
652,252 + MPMX19_05154 0.52 +0.0
652,252 + MPMX19_05154 0.52 +2.0
652,252 + MPMX19_05154 0.52 -0.1
652,253 - MPMX19_05154 0.52 -1.0
652,253 - MPMX19_05154 0.52 -1.1
652,253 - MPMX19_05154 0.52 -0.9
652,253 - MPMX19_05154 0.52 -0.4
652,253 - MPMX19_05154 0.52 -0.3
652,253 - MPMX19_05154 0.52 -0.5
652,253 - MPMX19_05154 0.52 -1.5
652,498 + MPMX19_05154 0.71 -0.7
652,498 + MPMX19_05154 0.71 -2.0
652,498 + MPMX19_05154 0.71 +0.0
652,498 + MPMX19_05154 0.71 +0.2
652,498 + MPMX19_05154 0.71 -0.3
652,498 + MPMX19_05154 0.71 -1.8
652,499 - MPMX19_05154 0.71 +0.7
652,499 - MPMX19_05154 0.71 -1.1
652,499 - MPMX19_05154 0.71 +1.0
652,499 - MPMX19_05154 0.71 +0.0
652,499 - MPMX19_05154 0.71 -0.9
652,499 - MPMX19_05154 0.71 -0.9
652,499 - MPMX19_05154 0.71 -1.3
652,738 + MPMX19_05154 0.89 -0.5
652,739 - MPMX19_05154 0.90 -0.9
652,945 + -0.8
652,945 + -0.1
652,946 - -1.0
652,946 - +0.7
652,946 - -2.2
652,946 - +0.5
652,946 - -0.3
652,946 - -1.1
652,946 - -0.5
652,946 - -1.2
652,946 - -0.1
653,037 + -0.3
653,037 + +0.2
653,037 + -1.0
653,037 + -0.1
653,037 + -0.3
653,037 + -2.1
653,037 + -0.3
653,037 + -1.4
653,038 - -0.8
653,038 - -1.3
653,038 - -0.5
653,038 - -0.8
653,038 - -0.9
653,038 - -0.7
653,038 - -1.0
653,038 - +1.0
653,038 - +0.0
653,038 - -1.9
653,038 - -0.8
653,038 - +0.3
653,038 - -1.4
653,038 - +1.0
653,038 - +1.7
653,038 - -2.0
653,394 + MPMX19_05155 0.18 -2.3
653,394 + MPMX19_05155 0.18 -1.4
653,395 - MPMX19_05155 0.18 +0.2
653,395 - MPMX19_05155 0.18 -0.5
653,395 - MPMX19_05155 0.18 -0.4
653,805 + MPMX19_05155 0.44 +0.9
653,805 + MPMX19_05155 0.44 -0.5
653,805 + MPMX19_05155 0.44 +1.2
653,805 + MPMX19_05155 0.44 -0.3
653,805 + MPMX19_05155 0.44 -2.0
653,805 + MPMX19_05155 0.44 -0.3
653,805 + MPMX19_05155 0.44 +0.7
653,805 + MPMX19_05155 0.44 +0.5
653,805 + MPMX19_05155 0.44 +0.5
653,805 + MPMX19_05155 0.44 +1.4
653,805 + MPMX19_05155 0.44 -0.2
653,805 + MPMX19_05155 0.44 -0.5
653,805 + MPMX19_05155 0.44 -0.4
653,806 - MPMX19_05155 0.44 -1.1
653,806 - MPMX19_05155 0.44 +0.8
653,806 - MPMX19_05155 0.44 -1.0
653,806 - MPMX19_05155 0.44 -0.2
653,806 - MPMX19_05155 0.44 +0.5
653,806 - MPMX19_05155 0.44 +0.2
653,806 - MPMX19_05155 0.44 -0.5
653,806 - MPMX19_05155 0.44 -1.3
653,806 - MPMX19_05155 0.44 +0.5
653,806 - MPMX19_05155 0.44 +1.5
653,806 - MPMX19_05155 0.44 -0.8
654,431 + MPMX19_05155 0.84 -1.4
654,431 + MPMX19_05155 0.84 +1.0
654,431 + MPMX19_05155 0.84 -0.1
654,432 - MPMX19_05155 0.84 -1.8
654,432 - MPMX19_05155 0.84 -1.0
654,432 - MPMX19_05155 0.84 +0.5
654,432 - MPMX19_05155 0.84 -1.0
654,432 - MPMX19_05155 0.84 +0.7
654,550 - +0.5
654,581 + -0.5
654,581 + +0.0
654,581 + -0.3
654,581 + +0.3
654,581 + +0.2
654,582 - -0.2
654,582 - +0.0
654,582 - -0.4
654,582 - -1.1
654,582 - +0.2
654,582 - -2.0
654,582 - -0.4
654,582 - +0.7
654,654 + -0.3
654,654 + +1.0
654,654 + +1.6
654,655 - +0.6
654,668 + -0.3
654,685 + -2.5
654,686 - +1.6
655,005 + MPMX19_05156 0.27 +0.7
655,005 + MPMX19_05156 0.27 +1.5
655,005 + MPMX19_05156 0.27 -1.0
655,005 + MPMX19_05156 0.27 +0.2
655,006 - MPMX19_05156 0.27 -0.8
655,006 - MPMX19_05156 0.27 -1.2
655,006 - MPMX19_05156 0.27 +0.2
655,006 - MPMX19_05156 0.27 -0.1
655,006 - MPMX19_05156 0.27 -0.2
655,017 + MPMX19_05156 0.29 +0.3
655,017 + MPMX19_05156 0.29 -2.0
655,017 + MPMX19_05156 0.29 +0.1
655,017 + MPMX19_05156 0.29 -2.3
655,017 + MPMX19_05156 0.29 -1.3
655,018 - MPMX19_05156 0.29 -1.9
655,018 - MPMX19_05156 0.29 -2.3
655,018 - MPMX19_05156 0.29 -1.2
655,018 - MPMX19_05156 0.29 +0.5
655,018 - MPMX19_05156 0.29 +1.5
655,018 - MPMX19_05156 0.29 -0.3
655,018 - MPMX19_05156 0.29 -2.4
655,146 + MPMX19_05156 0.46 +0.5
655,146 + MPMX19_05156 0.46 -2.0
655,146 + MPMX19_05156 0.46 +0.2
655,146 + MPMX19_05156 0.46 +1.5
655,146 + MPMX19_05156 0.46 -1.3
655,146 + MPMX19_05156 0.46 +0.0
655,147 - MPMX19_05156 0.46 +1.0
655,147 - MPMX19_05156 0.46 -1.3
655,147 - MPMX19_05156 0.46 +0.5
655,147 - MPMX19_05156 0.46 +0.7
655,147 - MPMX19_05156 0.46 +0.6
655,287 + MPMX19_05156 0.65 -1.8
655,299 + MPMX19_05156 0.67 -1.0
655,299 + MPMX19_05156 0.67 -1.2
655,300 - MPMX19_05156 0.67 +0.8
655,300 - MPMX19_05156 0.67 +0.3
655,300 - MPMX19_05156 0.67 +1.5
655,372 + MPMX19_05156 0.77 -1.1
655,372 + MPMX19_05156 0.77 -1.0
655,372 + MPMX19_05156 0.77 +0.0
655,372 + MPMX19_05156 0.77 -0.8
655,372 + MPMX19_05156 0.77 -1.9
655,372 + MPMX19_05156 0.77 -0.7
655,372 + MPMX19_05156 0.77 +0.0
655,373 - MPMX19_05156 0.77 -0.8
655,373 - MPMX19_05156 0.77 +1.0
655,373 - MPMX19_05156 0.77 -1.3
655,373 - MPMX19_05156 0.77 -1.1
655,373 - MPMX19_05156 0.77 +1.0
655,373 - MPMX19_05156 0.77 +0.2
655,373 - MPMX19_05156 0.77 +0.5
655,373 - MPMX19_05156 0.77 +0.8
655,373 - MPMX19_05156 0.77 -0.8
655,373 - MPMX19_05156 0.77 +0.2
655,373 - MPMX19_05156 0.77 -2.7
655,443 + MPMX19_05156 0.87 -1.3
655,444 - MPMX19_05156 0.87 -1.1
655,444 - MPMX19_05156 0.87 +0.8
655,478 - +1.6
655,561 + +0.5
655,561 + +1.6
655,675 - -0.3

Or see this region's nucleotide sequence