Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05116

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05114 and MPMX19_05115 overlap by 4 nucleotidesMPMX19_05115 and MPMX19_05116 are separated by 172 nucleotidesMPMX19_05116 and MPMX19_05117 are separated by 266 nucleotides MPMX19_05114: MPMX19_05114 - hypothetical protein, at 599,974 to 600,588 _05114 MPMX19_05115: MPMX19_05115 - Transcriptional regulatory protein DegU, at 600,585 to 601,235 _05115 MPMX19_05116: MPMX19_05116 - hypothetical protein, at 601,408 to 601,869 _05116 MPMX19_05117: MPMX19_05117 - HTH-type transcriptional regulator HexR, at 602,136 to 603,053 _05117 Position (kb) 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 600.428 kb on + strand, within MPMX19_05114at 600.429 kb on - strand, within MPMX19_05114at 600.499 kb on + strand, within MPMX19_05114at 600.499 kb on + strand, within MPMX19_05114at 600.500 kb on - strand, within MPMX19_05114at 600.500 kb on - strand, within MPMX19_05114at 600.500 kb on - strand, within MPMX19_05114at 600.500 kb on - strand, within MPMX19_05114at 600.568 kb on + strandat 600.568 kb on + strandat 600.568 kb on + strandat 600.568 kb on + strandat 600.569 kb on - strandat 600.569 kb on - strandat 600.569 kb on - strandat 600.569 kb on - strandat 600.569 kb on - strandat 600.576 kb on + strandat 600.576 kb on + strandat 600.576 kb on + strandat 600.576 kb on + strandat 600.576 kb on + strandat 600.576 kb on + strandat 600.576 kb on + strandat 600.577 kb on - strandat 600.577 kb on - strandat 600.577 kb on - strandat 600.640 kb on + strandat 600.640 kb on + strandat 600.640 kb on + strandat 600.640 kb on + strandat 600.640 kb on + strandat 600.640 kb on + strandat 600.640 kb on + strandat 600.641 kb on - strandat 600.641 kb on - strandat 600.641 kb on - strandat 600.641 kb on - strandat 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.862 kb on + strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 600.863 kb on - strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.168 kb on + strand, within MPMX19_05115at 601.169 kb on - strand, within MPMX19_05115at 601.169 kb on - strand, within MPMX19_05115at 601.169 kb on - strand, within MPMX19_05115at 601.169 kb on - strand, within MPMX19_05115at 601.382 kb on + strandat 601.382 kb on + strandat 601.382 kb on + strandat 601.382 kb on + strandat 601.382 kb on + strandat 601.382 kb on + strandat 601.383 kb on - strandat 601.383 kb on - strandat 601.383 kb on - strandat 601.383 kb on - strandat 601.383 kb on - strandat 601.383 kb on - strandat 601.383 kb on - strandat 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.490 kb on + strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.491 kb on - strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.775 kb on + strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 601.776 kb on - strand, within MPMX19_05116at 602.002 kb on - strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.018 kb on + strandat 602.019 kb on - strandat 602.019 kb on - strandat 602.019 kb on - strandat 602.019 kb on - strandat 602.019 kb on - strandat 602.065 kb on + strandat 602.065 kb on + strandat 602.065 kb on + strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.066 kb on - strandat 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.284 kb on + strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.285 kb on - strand, within MPMX19_05117at 602.746 kb on + strand, within MPMX19_05117at 602.746 kb on + strand, within MPMX19_05117at 602.746 kb on + strand, within MPMX19_05117at 602.746 kb on + strand, within MPMX19_05117at 602.746 kb on + strand, within MPMX19_05117at 602.746 kb on + strand, within MPMX19_05117at 602.747 kb on - strand, within MPMX19_05117at 602.747 kb on - strand, within MPMX19_05117at 602.747 kb on - strand, within MPMX19_05117at 602.747 kb on - strand, within MPMX19_05117at 602.747 kb on - strand, within MPMX19_05117at 602.747 kb on - strand, within MPMX19_05117

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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600,428 + MPMX19_05114 0.74 -1.1
600,429 - MPMX19_05114 0.74 -1.1
600,499 + MPMX19_05114 0.85 -0.8
600,499 + MPMX19_05114 0.85 -2.0
600,500 - MPMX19_05114 0.86 +0.1
600,500 - MPMX19_05114 0.86 -1.1
600,500 - MPMX19_05114 0.86 -1.0
600,500 - MPMX19_05114 0.86 -1.0
600,568 + -0.8
600,568 + -1.5
600,568 + +0.7
600,568 + +0.0
600,569 - -0.4
600,569 - +0.6
600,569 - -0.4
600,569 - -1.1
600,569 - +0.3
600,576 + -0.9
600,576 + -0.7
600,576 + +0.6
600,576 + +0.5
600,576 + +1.0
600,576 + -0.8
600,576 + -0.1
600,577 - -3.4
600,577 - +0.3
600,577 - -0.5
600,640 + +0.3
600,640 + -0.8
600,640 + -0.9
600,640 + -1.0
600,640 + -1.8
600,640 + -0.3
600,640 + -0.8
600,641 - +0.7
600,641 - +1.2
600,641 - -1.0
600,641 - -2.2
600,862 + MPMX19_05115 0.43 -1.6
600,862 + MPMX19_05115 0.43 -0.0
600,862 + MPMX19_05115 0.43 -2.6
600,862 + MPMX19_05115 0.43 -1.8
600,862 + MPMX19_05115 0.43 -0.4
600,862 + MPMX19_05115 0.43 -0.4
600,862 + MPMX19_05115 0.43 +1.1
600,862 + MPMX19_05115 0.43 -1.9
600,863 - MPMX19_05115 0.43 -1.9
600,863 - MPMX19_05115 0.43 +0.2
600,863 - MPMX19_05115 0.43 +0.4
600,863 - MPMX19_05115 0.43 -0.6
600,863 - MPMX19_05115 0.43 -0.4
600,863 - MPMX19_05115 0.43 -0.7
600,863 - MPMX19_05115 0.43 -1.1
601,168 + MPMX19_05115 0.90 -0.3
601,168 + MPMX19_05115 0.90 -0.1
601,168 + MPMX19_05115 0.90 -0.4
601,168 + MPMX19_05115 0.90 -0.1
601,168 + MPMX19_05115 0.90 +0.4
601,168 + MPMX19_05115 0.90 +0.1
601,168 + MPMX19_05115 0.90 -1.1
601,168 + MPMX19_05115 0.90 -0.8
601,169 - MPMX19_05115 0.90 -0.9
601,169 - MPMX19_05115 0.90 -0.4
601,169 - MPMX19_05115 0.90 -1.0
601,169 - MPMX19_05115 0.90 +0.4
601,382 + -1.6
601,382 + +0.8
601,382 + -2.4
601,382 + +0.4
601,382 + +0.1
601,382 + -2.5
601,383 - +1.7
601,383 - -2.4
601,383 - -0.7
601,383 - -0.3
601,383 - -1.7
601,383 - +0.1
601,383 - -1.3
601,490 + MPMX19_05116 0.18 -0.1
601,490 + MPMX19_05116 0.18 +1.0
601,490 + MPMX19_05116 0.18 -0.4
601,490 + MPMX19_05116 0.18 -2.1
601,490 + MPMX19_05116 0.18 +0.0
601,490 + MPMX19_05116 0.18 +0.0
601,490 + MPMX19_05116 0.18 -2.0
601,490 + MPMX19_05116 0.18 +1.3
601,490 + MPMX19_05116 0.18 -1.1
601,490 + MPMX19_05116 0.18 -2.1
601,490 + MPMX19_05116 0.18 -0.4
601,490 + MPMX19_05116 0.18 -0.2
601,490 + MPMX19_05116 0.18 +0.7
601,490 + MPMX19_05116 0.18 +0.0
601,490 + MPMX19_05116 0.18 +0.4
601,490 + MPMX19_05116 0.18 -1.3
601,490 + MPMX19_05116 0.18 -0.8
601,490 + MPMX19_05116 0.18 +1.1
601,490 + MPMX19_05116 0.18 +0.4
601,490 + MPMX19_05116 0.18 -2.2
601,490 + MPMX19_05116 0.18 +0.2
601,490 + MPMX19_05116 0.18 -0.1
601,490 + MPMX19_05116 0.18 +0.4
601,490 + MPMX19_05116 0.18 -0.2
601,490 + MPMX19_05116 0.18 -1.6
601,490 + MPMX19_05116 0.18 -0.8
601,490 + MPMX19_05116 0.18 -0.8
601,491 - MPMX19_05116 0.18 -0.8
601,491 - MPMX19_05116 0.18 -0.3
601,491 - MPMX19_05116 0.18 +1.0
601,491 - MPMX19_05116 0.18 -3.3
601,491 - MPMX19_05116 0.18 -0.4
601,491 - MPMX19_05116 0.18 +0.9
601,491 - MPMX19_05116 0.18 -0.0
601,491 - MPMX19_05116 0.18 -1.4
601,491 - MPMX19_05116 0.18 -0.2
601,491 - MPMX19_05116 0.18 -0.9
601,491 - MPMX19_05116 0.18 +0.2
601,491 - MPMX19_05116 0.18 -0.6
601,491 - MPMX19_05116 0.18 +1.2
601,491 - MPMX19_05116 0.18 -0.3
601,491 - MPMX19_05116 0.18 -1.4
601,491 - MPMX19_05116 0.18 -1.0
601,491 - MPMX19_05116 0.18 -0.9
601,491 - MPMX19_05116 0.18 -0.1
601,491 - MPMX19_05116 0.18 +0.2
601,491 - MPMX19_05116 0.18 +2.0
601,491 - MPMX19_05116 0.18 -1.1
601,491 - MPMX19_05116 0.18 +2.0
601,491 - MPMX19_05116 0.18 -1.1
601,491 - MPMX19_05116 0.18 -0.3
601,491 - MPMX19_05116 0.18 +0.2
601,775 + MPMX19_05116 0.79 -1.7
601,775 + MPMX19_05116 0.79 +0.3
601,775 + MPMX19_05116 0.79 -1.6
601,775 + MPMX19_05116 0.79 -0.2
601,775 + MPMX19_05116 0.79 +0.2
601,775 + MPMX19_05116 0.79 -0.4
601,775 + MPMX19_05116 0.79 +0.3
601,775 + MPMX19_05116 0.79 -2.0
601,776 - MPMX19_05116 0.80 -1.5
601,776 - MPMX19_05116 0.80 -0.8
601,776 - MPMX19_05116 0.80 +0.0
601,776 - MPMX19_05116 0.80 -1.0
601,776 - MPMX19_05116 0.80 -0.6
601,776 - MPMX19_05116 0.80 -2.4
601,776 - MPMX19_05116 0.80 +0.5
601,776 - MPMX19_05116 0.80 +0.2
602,002 - -1.1
602,018 + -1.4
602,018 + -0.1
602,018 + -1.1
602,018 + -1.4
602,018 + -1.3
602,018 + +0.1
602,018 + -1.0
602,018 + +0.6
602,018 + +0.4
602,018 + -0.3
602,018 + -1.3
602,019 - -2.6
602,019 - -0.1
602,019 - -1.0
602,019 - +0.2
602,019 - -2.1
602,065 + -0.2
602,065 + -0.9
602,065 + -1.4
602,066 - -0.1
602,066 - +0.2
602,066 - -0.1
602,066 - -0.3
602,066 - +0.4
602,066 - -1.0
602,066 - -0.2
602,066 - -0.1
602,066 - -1.0
602,066 - -0.2
602,284 + MPMX19_05117 0.16 -1.3
602,284 + MPMX19_05117 0.16 +0.0
602,284 + MPMX19_05117 0.16 -0.5
602,284 + MPMX19_05117 0.16 +0.1
602,284 + MPMX19_05117 0.16 +1.3
602,284 + MPMX19_05117 0.16 -1.1
602,284 + MPMX19_05117 0.16 -0.2
602,284 + MPMX19_05117 0.16 +0.0
602,284 + MPMX19_05117 0.16 -1.0
602,284 + MPMX19_05117 0.16 -0.8
602,284 + MPMX19_05117 0.16 +1.0
602,284 + MPMX19_05117 0.16 -1.0
602,284 + MPMX19_05117 0.16 -0.3
602,284 + MPMX19_05117 0.16 -1.4
602,284 + MPMX19_05117 0.16 -0.1
602,284 + MPMX19_05117 0.16 +0.0
602,285 - MPMX19_05117 0.16 +1.0
602,285 - MPMX19_05117 0.16 -2.8
602,285 - MPMX19_05117 0.16 +1.0
602,285 - MPMX19_05117 0.16 -1.6
602,285 - MPMX19_05117 0.16 -0.1
602,285 - MPMX19_05117 0.16 -2.2
602,285 - MPMX19_05117 0.16 -1.4
602,285 - MPMX19_05117 0.16 +1.0
602,285 - MPMX19_05117 0.16 -0.7
602,285 - MPMX19_05117 0.16 +0.1
602,285 - MPMX19_05117 0.16 +0.7
602,746 + MPMX19_05117 0.66 -2.1
602,746 + MPMX19_05117 0.66 -0.5
602,746 + MPMX19_05117 0.66 -0.7
602,746 + MPMX19_05117 0.66 +0.7
602,746 + MPMX19_05117 0.66 -0.7
602,746 + MPMX19_05117 0.66 -0.5
602,747 - MPMX19_05117 0.67 -1.0
602,747 - MPMX19_05117 0.67 -1.1
602,747 - MPMX19_05117 0.67 -0.3
602,747 - MPMX19_05117 0.67 -1.4
602,747 - MPMX19_05117 0.67 -2.0
602,747 - MPMX19_05117 0.67 -0.1

Or see this region's nucleotide sequence