Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05096

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05093 and MPMX19_05094 are separated by 205 nucleotidesMPMX19_05094 and MPMX19_05095 overlap by 20 nucleotidesMPMX19_05095 and MPMX19_05096 are separated by 55 nucleotidesMPMX19_05096 and MPMX19_05097 overlap by 1 nucleotidesMPMX19_05097 and MPMX19_05098 are separated by 4 nucleotides MPMX19_05093: MPMX19_05093 - Biotin transport ATP-binding protein BioM, at 582,266 to 582,940 _05093 MPMX19_05094: MPMX19_05094 - Antitoxin YefM, at 583,146 to 583,412 _05094 MPMX19_05095: MPMX19_05095 - Toxin YoeB, at 583,393 to 583,659 _05095 MPMX19_05096: MPMX19_05096 - L-cystine import ATP-binding protein TcyC, at 583,715 to 584,542 _05096 MPMX19_05097: MPMX19_05097 - L-cystine transport system permease protein YecS, at 584,542 to 585,246 _05097 MPMX19_05098: MPMX19_05098 - Arginine transport system permease protein ArtQ, at 585,251 to 585,898 _05098 Position (kb) 583 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 583.023 kb on + strandat 583.053 kb on + strandat 583.053 kb on + strandat 583.053 kb on + strandat 583.054 kb on - strandat 583.070 kb on - strandat 583.070 kb on - strandat 583.073 kb on + strandat 583.073 kb on + strandat 583.074 kb on - strandat 583.098 kb on + strandat 583.099 kb on - strandat 583.099 kb on - strandat 583.173 kb on - strand, within MPMX19_05094at 583.173 kb on - strand, within MPMX19_05094at 583.173 kb on - strand, within MPMX19_05094at 583.429 kb on + strand, within MPMX19_05095at 583.430 kb on - strand, within MPMX19_05095at 583.430 kb on - strand, within MPMX19_05095at 583.433 kb on + strand, within MPMX19_05095at 583.433 kb on + strand, within MPMX19_05095at 583.434 kb on - strand, within MPMX19_05095at 583.434 kb on - strand, within MPMX19_05095at 583.500 kb on + strand, within MPMX19_05095at 583.501 kb on - strand, within MPMX19_05095at 583.501 kb on - strand, within MPMX19_05095at 583.594 kb on + strand, within MPMX19_05095at 583.595 kb on - strand, within MPMX19_05095at 583.634 kb on + strandat 583.634 kb on + strandat 583.634 kb on + strandat 583.648 kb on + strandat 583.654 kb on + strandat 583.655 kb on - strandat 583.655 kb on - strandat 583.655 kb on - strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.737 kb on + strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 583.738 kb on - strandat 584.055 kb on + strand, within MPMX19_05096at 584.055 kb on + strand, within MPMX19_05096at 584.056 kb on - strand, within MPMX19_05096at 584.056 kb on - strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.278 kb on + strand, within MPMX19_05096at 584.279 kb on - strand, within MPMX19_05096at 584.279 kb on - strand, within MPMX19_05096at 584.279 kb on - strand, within MPMX19_05096at 584.281 kb on - strand, within MPMX19_05096at 584.281 kb on - strand, within MPMX19_05096at 584.281 kb on - strand, within MPMX19_05096at 584.322 kb on + strand, within MPMX19_05096at 584.322 kb on + strand, within MPMX19_05096at 584.323 kb on - strand, within MPMX19_05096at 584.663 kb on + strand, within MPMX19_05097at 584.663 kb on + strand, within MPMX19_05097at 584.663 kb on + strand, within MPMX19_05097at 584.664 kb on - strand, within MPMX19_05097at 584.664 kb on - strand, within MPMX19_05097at 584.732 kb on + strand, within MPMX19_05097at 584.732 kb on + strand, within MPMX19_05097at 584.732 kb on + strand, within MPMX19_05097at 584.732 kb on + strand, within MPMX19_05097at 584.732 kb on + strand, within MPMX19_05097at 584.732 kb on + strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.733 kb on - strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.864 kb on + strand, within MPMX19_05097at 584.865 kb on - strand, within MPMX19_05097at 584.865 kb on - strand, within MPMX19_05097at 584.865 kb on - strand, within MPMX19_05097at 584.865 kb on - strand, within MPMX19_05097at 584.865 kb on - strand, within MPMX19_05097at 584.945 kb on + strand, within MPMX19_05097at 584.945 kb on + strand, within MPMX19_05097at 584.946 kb on - strand, within MPMX19_05097at 584.946 kb on - strand, within MPMX19_05097at 584.957 kb on + strand, within MPMX19_05097at 584.957 kb on + strand, within MPMX19_05097at 584.957 kb on + strand, within MPMX19_05097at 584.957 kb on + strand, within MPMX19_05097at 584.957 kb on + strand, within MPMX19_05097at 584.957 kb on + strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 584.958 kb on - strand, within MPMX19_05097at 585.026 kb on + strand, within MPMX19_05097at 585.026 kb on + strand, within MPMX19_05097at 585.027 kb on - strand, within MPMX19_05097at 585.027 kb on - strand, within MPMX19_05097at 585.077 kb on + strand, within MPMX19_05097at 585.077 kb on + strand, within MPMX19_05097at 585.078 kb on - strand, within MPMX19_05097at 585.078 kb on - strand, within MPMX19_05097at 585.078 kb on - strand, within MPMX19_05097at 585.219 kb on - strandat 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.318 kb on + strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.319 kb on - strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.339 kb on + strand, within MPMX19_05098at 585.340 kb on - strand, within MPMX19_05098at 585.340 kb on - strand, within MPMX19_05098at 585.357 kb on + strand, within MPMX19_05098at 585.357 kb on + strand, within MPMX19_05098at 585.357 kb on + strand, within MPMX19_05098at 585.357 kb on + strand, within MPMX19_05098at 585.357 kb on + strand, within MPMX19_05098at 585.357 kb on + strand, within MPMX19_05098at 585.358 kb on - strand, within MPMX19_05098at 585.358 kb on - strand, within MPMX19_05098at 585.358 kb on - strand, within MPMX19_05098at 585.358 kb on - strand, within MPMX19_05098at 585.358 kb on - strand, within MPMX19_05098

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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583,023 + -0.5
583,053 + +0.5
583,053 + -1.5
583,053 + +0.3
583,054 - -1.2
583,070 - -1.1
583,070 - -0.5
583,073 + -1.5
583,073 + -2.3
583,074 - +0.2
583,098 + -2.1
583,099 - -0.1
583,099 - -0.8
583,173 - MPMX19_05094 0.10 +0.3
583,173 - MPMX19_05094 0.10 -0.3
583,173 - MPMX19_05094 0.10 -1.7
583,429 + MPMX19_05095 0.13 +1.0
583,430 - MPMX19_05095 0.14 -1.9
583,430 - MPMX19_05095 0.14 -1.8
583,433 + MPMX19_05095 0.15 +0.9
583,433 + MPMX19_05095 0.15 -0.5
583,434 - MPMX19_05095 0.15 +1.0
583,434 - MPMX19_05095 0.15 +1.3
583,500 + MPMX19_05095 0.40 -0.1
583,501 - MPMX19_05095 0.40 -1.0
583,501 - MPMX19_05095 0.40 -2.0
583,594 + MPMX19_05095 0.75 -0.6
583,595 - MPMX19_05095 0.76 -0.7
583,634 + +0.9
583,634 + -1.4
583,634 + +0.8
583,648 + -1.7
583,654 + -1.1
583,655 - -1.3
583,655 - -0.7
583,655 - -0.5
583,737 + +1.0
583,737 + -1.0
583,737 + -0.5
583,737 + -2.7
583,737 + -0.5
583,737 + +0.6
583,737 + +0.7
583,738 - +0.1
583,738 - +0.0
583,738 - -1.7
583,738 - +0.5
583,738 - +0.0
583,738 - -0.3
583,738 - +1.2
583,738 - +0.5
584,055 + MPMX19_05096 0.41 -0.8
584,055 + MPMX19_05096 0.41 -0.8
584,056 - MPMX19_05096 0.41 -2.4
584,056 - MPMX19_05096 0.41 -2.1
584,278 + MPMX19_05096 0.68 -0.2
584,278 + MPMX19_05096 0.68 -1.3
584,278 + MPMX19_05096 0.68 -0.8
584,278 + MPMX19_05096 0.68 +0.2
584,279 - MPMX19_05096 0.68 -2.3
584,279 - MPMX19_05096 0.68 -1.5
584,279 - MPMX19_05096 0.68 -0.1
584,281 - MPMX19_05096 0.68 -1.0
584,281 - MPMX19_05096 0.68 +1.0
584,281 - MPMX19_05096 0.68 +0.5
584,322 + MPMX19_05096 0.73 +0.5
584,322 + MPMX19_05096 0.73 +0.2
584,323 - MPMX19_05096 0.73 +0.7
584,663 + MPMX19_05097 0.17 -0.8
584,663 + MPMX19_05097 0.17 -0.3
584,663 + MPMX19_05097 0.17 -1.7
584,664 - MPMX19_05097 0.17 -0.1
584,664 - MPMX19_05097 0.17 -0.5
584,732 + MPMX19_05097 0.27 -0.9
584,732 + MPMX19_05097 0.27 -0.1
584,732 + MPMX19_05097 0.27 +1.6
584,732 + MPMX19_05097 0.27 -0.6
584,732 + MPMX19_05097 0.27 +1.0
584,732 + MPMX19_05097 0.27 -0.3
584,733 - MPMX19_05097 0.27 -0.6
584,733 - MPMX19_05097 0.27 -2.0
584,733 - MPMX19_05097 0.27 -0.8
584,733 - MPMX19_05097 0.27 +0.2
584,733 - MPMX19_05097 0.27 -0.9
584,733 - MPMX19_05097 0.27 -1.4
584,733 - MPMX19_05097 0.27 -0.1
584,733 - MPMX19_05097 0.27 -3.5
584,733 - MPMX19_05097 0.27 -0.7
584,864 + MPMX19_05097 0.46 +0.0
584,864 + MPMX19_05097 0.46 +0.5
584,864 + MPMX19_05097 0.46 -0.5
584,864 + MPMX19_05097 0.46 -2.0
584,864 + MPMX19_05097 0.46 +1.0
584,864 + MPMX19_05097 0.46 -0.5
584,864 + MPMX19_05097 0.46 -0.4
584,865 - MPMX19_05097 0.46 +1.0
584,865 - MPMX19_05097 0.46 +2.2
584,865 - MPMX19_05097 0.46 +1.3
584,865 - MPMX19_05097 0.46 -0.2
584,865 - MPMX19_05097 0.46 -1.4
584,945 + MPMX19_05097 0.57 -1.2
584,945 + MPMX19_05097 0.57 +0.0
584,946 - MPMX19_05097 0.57 -0.5
584,946 - MPMX19_05097 0.57 -0.8
584,957 + MPMX19_05097 0.59 -0.1
584,957 + MPMX19_05097 0.59 -0.3
584,957 + MPMX19_05097 0.59 -0.3
584,957 + MPMX19_05097 0.59 -0.7
584,957 + MPMX19_05097 0.59 -2.0
584,957 + MPMX19_05097 0.59 +0.2
584,958 - MPMX19_05097 0.59 -0.3
584,958 - MPMX19_05097 0.59 -1.4
584,958 - MPMX19_05097 0.59 -1.6
584,958 - MPMX19_05097 0.59 +0.6
584,958 - MPMX19_05097 0.59 +0.1
584,958 - MPMX19_05097 0.59 +0.6
584,958 - MPMX19_05097 0.59 -0.7
584,958 - MPMX19_05097 0.59 -1.0
585,026 + MPMX19_05097 0.69 +1.0
585,026 + MPMX19_05097 0.69 +1.2
585,027 - MPMX19_05097 0.69 -1.4
585,027 - MPMX19_05097 0.69 +0.8
585,077 + MPMX19_05097 0.76 -0.9
585,077 + MPMX19_05097 0.76 -0.1
585,078 - MPMX19_05097 0.76 -1.3
585,078 - MPMX19_05097 0.76 +0.1
585,078 - MPMX19_05097 0.76 -0.3
585,219 - -0.9
585,318 + MPMX19_05098 0.10 +0.7
585,318 + MPMX19_05098 0.10 +0.2
585,318 + MPMX19_05098 0.10 +0.5
585,318 + MPMX19_05098 0.10 +0.1
585,318 + MPMX19_05098 0.10 -0.5
585,318 + MPMX19_05098 0.10 +0.5
585,318 + MPMX19_05098 0.10 -0.8
585,318 + MPMX19_05098 0.10 -1.1
585,318 + MPMX19_05098 0.10 -2.0
585,318 + MPMX19_05098 0.10 -0.5
585,318 + MPMX19_05098 0.10 -1.0
585,319 - MPMX19_05098 0.10 -0.0
585,319 - MPMX19_05098 0.10 +0.0
585,319 - MPMX19_05098 0.10 -1.7
585,319 - MPMX19_05098 0.10 -1.0
585,319 - MPMX19_05098 0.10 +1.5
585,319 - MPMX19_05098 0.10 -0.4
585,319 - MPMX19_05098 0.10 +0.5
585,319 - MPMX19_05098 0.10 +0.3
585,319 - MPMX19_05098 0.10 -1.8
585,319 - MPMX19_05098 0.10 -1.1
585,319 - MPMX19_05098 0.10 -0.1
585,319 - MPMX19_05098 0.10 -1.4
585,319 - MPMX19_05098 0.10 -1.3
585,319 - MPMX19_05098 0.10 -1.0
585,319 - MPMX19_05098 0.10 +0.1
585,319 - MPMX19_05098 0.10 +0.6
585,319 - MPMX19_05098 0.10 -0.5
585,339 + MPMX19_05098 0.14 +0.3
585,339 + MPMX19_05098 0.14 +0.5
585,339 + MPMX19_05098 0.14 -1.0
585,339 + MPMX19_05098 0.14 -0.2
585,339 + MPMX19_05098 0.14 -0.3
585,339 + MPMX19_05098 0.14 +0.7
585,339 + MPMX19_05098 0.14 +0.5
585,340 - MPMX19_05098 0.14 -0.8
585,340 - MPMX19_05098 0.14 -1.3
585,357 + MPMX19_05098 0.16 -0.9
585,357 + MPMX19_05098 0.16 -1.5
585,357 + MPMX19_05098 0.16 +0.5
585,357 + MPMX19_05098 0.16 -0.5
585,357 + MPMX19_05098 0.16 +0.2
585,357 + MPMX19_05098 0.16 -0.8
585,358 - MPMX19_05098 0.17 -0.1
585,358 - MPMX19_05098 0.17 +0.2
585,358 - MPMX19_05098 0.17 -1.0
585,358 - MPMX19_05098 0.17 +0.5
585,358 - MPMX19_05098 0.17 -0.2

Or see this region's nucleotide sequence