Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05079

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05078 and MPMX19_05079 are separated by 141 nucleotidesMPMX19_05079 and MPMX19_05080 are separated by 429 nucleotides MPMX19_05078: MPMX19_05078 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 562,748 to 563,695 _05078 MPMX19_05079: MPMX19_05079 - hypothetical protein, at 563,837 to 564,058 _05079 MPMX19_05080: MPMX19_05080 - Sensor histidine kinase RcsC, at 564,488 to 570,412 _05080 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 562.905 kb on + strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.906 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 562.915 kb on - strand, within MPMX19_05078at 563.004 kb on + strand, within MPMX19_05078at 563.004 kb on + strand, within MPMX19_05078at 563.005 kb on - strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.064 kb on + strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.065 kb on - strand, within MPMX19_05078at 563.125 kb on + strand, within MPMX19_05078at 563.126 kb on - strand, within MPMX19_05078at 563.126 kb on - strand, within MPMX19_05078at 563.127 kb on + strand, within MPMX19_05078at 563.127 kb on + strand, within MPMX19_05078at 563.127 kb on + strand, within MPMX19_05078at 563.127 kb on + strand, within MPMX19_05078at 563.128 kb on - strand, within MPMX19_05078at 563.128 kb on - strand, within MPMX19_05078at 563.128 kb on - strand, within MPMX19_05078at 563.128 kb on - strand, within MPMX19_05078at 563.199 kb on + strand, within MPMX19_05078at 563.199 kb on + strand, within MPMX19_05078at 563.199 kb on + strand, within MPMX19_05078at 563.199 kb on + strand, within MPMX19_05078at 563.199 kb on + strand, within MPMX19_05078at 563.199 kb on + strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.200 kb on - strand, within MPMX19_05078at 563.302 kb on - strand, within MPMX19_05078at 563.451 kb on + strand, within MPMX19_05078at 563.451 kb on + strand, within MPMX19_05078at 563.451 kb on + strand, within MPMX19_05078at 563.451 kb on + strand, within MPMX19_05078at 563.451 kb on + strand, within MPMX19_05078at 563.451 kb on + strand, within MPMX19_05078at 563.452 kb on - strand, within MPMX19_05078at 563.452 kb on - strand, within MPMX19_05078at 563.463 kb on + strand, within MPMX19_05078at 563.463 kb on + strand, within MPMX19_05078at 563.463 kb on + strand, within MPMX19_05078at 563.463 kb on + strand, within MPMX19_05078at 563.463 kb on + strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.464 kb on - strand, within MPMX19_05078at 563.729 kb on - strandat 563.734 kb on + strandat 563.734 kb on + strandat 563.735 kb on - strandat 563.770 kb on + strandat 563.770 kb on + strandat 563.770 kb on + strandat 563.770 kb on + strandat 563.770 kb on + strandat 563.770 kb on + strandat 563.771 kb on - strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.153 kb on + strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.154 kb on - strandat 564.190 kb on - strandat 564.230 kb on - strandat 564.230 kb on - strandat 564.322 kb on + strandat 564.329 kb on + strandat 564.329 kb on + strandat 564.329 kb on + strandat 564.330 kb on - strandat 564.349 kb on + strandat 564.432 kb on + strandat 564.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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562,905 + MPMX19_05078 0.17 -0.1
562,906 - MPMX19_05078 0.17 -0.5
562,906 - MPMX19_05078 0.17 -0.9
562,906 - MPMX19_05078 0.17 +0.2
562,906 - MPMX19_05078 0.17 +1.7
562,906 - MPMX19_05078 0.17 -0.1
562,906 - MPMX19_05078 0.17 -0.8
562,906 - MPMX19_05078 0.17 -1.9
562,906 - MPMX19_05078 0.17 +0.3
562,915 - MPMX19_05078 0.18 +0.4
562,915 - MPMX19_05078 0.18 -0.3
562,915 - MPMX19_05078 0.18 -1.3
562,915 - MPMX19_05078 0.18 -1.3
563,004 + MPMX19_05078 0.27 -0.5
563,004 + MPMX19_05078 0.27 -1.4
563,005 - MPMX19_05078 0.27 -0.5
563,064 + MPMX19_05078 0.33 -0.3
563,064 + MPMX19_05078 0.33 -0.3
563,064 + MPMX19_05078 0.33 -0.1
563,064 + MPMX19_05078 0.33 +0.5
563,064 + MPMX19_05078 0.33 -0.5
563,064 + MPMX19_05078 0.33 +0.2
563,064 + MPMX19_05078 0.33 -0.5
563,064 + MPMX19_05078 0.33 -0.3
563,064 + MPMX19_05078 0.33 +1.7
563,064 + MPMX19_05078 0.33 -1.0
563,064 + MPMX19_05078 0.33 +0.1
563,064 + MPMX19_05078 0.33 +1.7
563,064 + MPMX19_05078 0.33 +0.6
563,064 + MPMX19_05078 0.33 -0.9
563,064 + MPMX19_05078 0.33 +0.7
563,064 + MPMX19_05078 0.33 -0.5
563,064 + MPMX19_05078 0.33 +0.9
563,064 + MPMX19_05078 0.33 +0.1
563,064 + MPMX19_05078 0.33 -1.4
563,064 + MPMX19_05078 0.33 +1.3
563,064 + MPMX19_05078 0.33 -2.9
563,064 + MPMX19_05078 0.33 +1.1
563,064 + MPMX19_05078 0.33 -0.3
563,065 - MPMX19_05078 0.33 -2.1
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -1.1
563,065 - MPMX19_05078 0.33 +0.5
563,065 - MPMX19_05078 0.33 -1.4
563,065 - MPMX19_05078 0.33 -0.1
563,065 - MPMX19_05078 0.33 +3.1
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -1.9
563,065 - MPMX19_05078 0.33 +0.2
563,065 - MPMX19_05078 0.33 -0.4
563,065 - MPMX19_05078 0.33 +0.2
563,065 - MPMX19_05078 0.33 -0.6
563,065 - MPMX19_05078 0.33 -1.5
563,065 - MPMX19_05078 0.33 +0.7
563,065 - MPMX19_05078 0.33 +1.2
563,065 - MPMX19_05078 0.33 -1.6
563,065 - MPMX19_05078 0.33 -0.8
563,065 - MPMX19_05078 0.33 -0.8
563,065 - MPMX19_05078 0.33 +1.3
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 +1.2
563,065 - MPMX19_05078 0.33 +0.5
563,065 - MPMX19_05078 0.33 +0.8
563,065 - MPMX19_05078 0.33 -0.5
563,065 - MPMX19_05078 0.33 -0.8
563,065 - MPMX19_05078 0.33 -1.4
563,065 - MPMX19_05078 0.33 -0.1
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -1.9
563,065 - MPMX19_05078 0.33 -1.7
563,065 - MPMX19_05078 0.33 -1.5
563,065 - MPMX19_05078 0.33 -1.3
563,065 - MPMX19_05078 0.33 -0.9
563,065 - MPMX19_05078 0.33 +0.8
563,065 - MPMX19_05078 0.33 +0.3
563,125 + MPMX19_05078 0.40 -0.3
563,126 - MPMX19_05078 0.40 +0.6
563,126 - MPMX19_05078 0.40 -0.7
563,127 + MPMX19_05078 0.40 -0.4
563,127 + MPMX19_05078 0.40 -2.9
563,127 + MPMX19_05078 0.40 +0.1
563,127 + MPMX19_05078 0.40 -0.3
563,128 - MPMX19_05078 0.40 -0.4
563,128 - MPMX19_05078 0.40 +0.7
563,128 - MPMX19_05078 0.40 +1.2
563,128 - MPMX19_05078 0.40 -1.6
563,199 + MPMX19_05078 0.48 +0.6
563,199 + MPMX19_05078 0.48 +0.1
563,199 + MPMX19_05078 0.48 +0.7
563,199 + MPMX19_05078 0.48 +0.8
563,199 + MPMX19_05078 0.48 -0.8
563,199 + MPMX19_05078 0.48 -0.1
563,200 - MPMX19_05078 0.48 -0.6
563,200 - MPMX19_05078 0.48 +1.5
563,200 - MPMX19_05078 0.48 +1.1
563,200 - MPMX19_05078 0.48 -0.6
563,200 - MPMX19_05078 0.48 +0.9
563,200 - MPMX19_05078 0.48 +0.1
563,200 - MPMX19_05078 0.48 +1.2
563,302 - MPMX19_05078 0.58 +1.8
563,451 + MPMX19_05078 0.74 -2.3
563,451 + MPMX19_05078 0.74 +1.2
563,451 + MPMX19_05078 0.74 -1.3
563,451 + MPMX19_05078 0.74 -0.9
563,451 + MPMX19_05078 0.74 -0.2
563,451 + MPMX19_05078 0.74 -0.5
563,452 - MPMX19_05078 0.74 -0.4
563,452 - MPMX19_05078 0.74 -2.7
563,463 + MPMX19_05078 0.75 -1.2
563,463 + MPMX19_05078 0.75 +0.7
563,463 + MPMX19_05078 0.75 +0.7
563,463 + MPMX19_05078 0.75 -0.3
563,463 + MPMX19_05078 0.75 +0.2
563,464 - MPMX19_05078 0.76 -0.6
563,464 - MPMX19_05078 0.76 -0.5
563,464 - MPMX19_05078 0.76 -0.6
563,464 - MPMX19_05078 0.76 -0.6
563,464 - MPMX19_05078 0.76 +0.1
563,464 - MPMX19_05078 0.76 +0.6
563,464 - MPMX19_05078 0.76 -2.3
563,464 - MPMX19_05078 0.76 +0.2
563,464 - MPMX19_05078 0.76 -0.5
563,464 - MPMX19_05078 0.76 +2.1
563,464 - MPMX19_05078 0.76 -1.3
563,464 - MPMX19_05078 0.76 -1.8
563,464 - MPMX19_05078 0.76 -1.8
563,729 - -0.6
563,734 + +0.2
563,734 + -2.0
563,735 - -1.1
563,770 + +2.1
563,770 + -0.3
563,770 + -0.9
563,770 + -0.8
563,770 + -0.8
563,770 + -0.3
563,771 - -0.1
564,153 + -0.7
564,153 + +0.6
564,153 + -1.3
564,153 + -2.8
564,153 + -1.5
564,153 + -0.1
564,153 + -0.7
564,153 + +0.1
564,153 + +0.6
564,153 + +1.1
564,153 + -0.8
564,153 + -0.5
564,153 + -0.5
564,154 - -0.6
564,154 - +0.1
564,154 - -0.9
564,154 - -0.7
564,154 - +0.8
564,154 - -1.1
564,154 - +0.2
564,154 - -0.0
564,154 - -1.3
564,154 - -0.5
564,154 - -1.4
564,154 - +0.1
564,154 - -0.3
564,154 - -0.2
564,190 - -1.9
564,230 - +1.1
564,230 - -0.1
564,322 + -0.3
564,329 + -0.8
564,329 + +0.2
564,329 + +1.6
564,330 - -0.1
564,349 + -0.8
564,432 + -0.5
564,433 - -0.3

Or see this region's nucleotide sequence