Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05062

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05060 and MPMX19_05061 are separated by 58 nucleotidesMPMX19_05061 and MPMX19_05062 are separated by 336 nucleotidesMPMX19_05062 and MPMX19_05063 are separated by 145 nucleotides MPMX19_05060: MPMX19_05060 - hypothetical protein, at 544,450 to 544,827 _05060 MPMX19_05061: MPMX19_05061 - hypothetical protein, at 544,886 to 545,275 _05061 MPMX19_05062: MPMX19_05062 - Sulfur carrier protein TusA, at 545,612 to 545,839 _05062 MPMX19_05063: MPMX19_05063 - Histone deacetylase-like amidohydrolase, at 545,985 to 546,974 _05063 Position (kb) 545 546Strain fitness (log2 ratio) -2 -1 0 1 2 3at 544.641 kb on - strand, within MPMX19_05060at 544.641 kb on - strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.992 kb on + strand, within MPMX19_05061at 544.992 kb on + strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 545.046 kb on + strand, within MPMX19_05061at 545.046 kb on + strand, within MPMX19_05061at 545.047 kb on - strand, within MPMX19_05061at 545.047 kb on - strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.281 kb on + strandat 545.281 kb on + strandat 545.356 kb on + strandat 545.356 kb on + strandat 545.356 kb on + strandat 545.361 kb on + strandat 545.361 kb on + strandat 545.364 kb on + strandat 545.365 kb on - strandat 545.366 kb on + strandat 545.367 kb on - strandat 545.367 kb on - strandat 545.373 kb on - strandat 545.439 kb on + strandat 545.440 kb on - strandat 545.440 kb on - strandat 545.511 kb on + strandat 545.511 kb on + strandat 545.512 kb on - strandat 545.599 kb on + strandat 545.632 kb on + strandat 545.632 kb on + strandat 545.632 kb on + strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.704 kb on + strand, within MPMX19_05062at 545.884 kb on - strandat 545.884 kb on - strandat 545.884 kb on - strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.961 kb on - strandat 545.961 kb on - strandat 545.970 kb on - strandat 545.970 kb on - strandat 545.970 kb on - strandat 546.029 kb on - strandat 546.029 kb on - strandat 546.062 kb on + strandat 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.612 kb on + strand, within MPMX19_05063at 546.612 kb on + strand, within MPMX19_05063at 546.613 kb on - strand, within MPMX19_05063at 546.613 kb on - strand, within MPMX19_05063at 546.649 kb on - strand, within MPMX19_05063

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
544,641 - MPMX19_05060 0.51 +0.4
544,641 - MPMX19_05060 0.51 +0.8
544,649 + MPMX19_05060 0.53 -0.9
544,649 + MPMX19_05060 0.53 +0.1
544,649 + MPMX19_05060 0.53 -0.9
544,649 + MPMX19_05060 0.53 +0.5
544,649 + MPMX19_05060 0.53 -1.1
544,650 - MPMX19_05060 0.53 -0.4
544,650 - MPMX19_05060 0.53 -0.5
544,650 - MPMX19_05060 0.53 +2.1
544,650 - MPMX19_05060 0.53 +0.6
544,650 - MPMX19_05060 0.53 +1.1
544,650 - MPMX19_05060 0.53 +0.3
544,650 - MPMX19_05060 0.53 -0.3
544,711 + MPMX19_05060 0.69 +0.5
544,711 + MPMX19_05060 0.69 -1.6
544,711 + MPMX19_05060 0.69 +0.7
544,711 + MPMX19_05060 0.69 -1.5
544,711 + MPMX19_05060 0.69 -0.3
544,711 + MPMX19_05060 0.69 -1.1
544,712 - MPMX19_05060 0.69 +2.4
544,712 - MPMX19_05060 0.69 +0.1
544,712 - MPMX19_05060 0.69 -2.3
544,712 - MPMX19_05060 0.69 -1.4
544,712 - MPMX19_05060 0.69 +0.3
544,839 + +0.2
544,839 + -0.9
544,839 + -0.7
544,839 + +0.1
544,839 + -0.5
544,839 + +1.3
544,839 + +0.1
544,839 + +0.4
544,840 - +0.3
544,840 - -0.6
544,840 - -1.7
544,840 - -0.0
544,840 - -1.6
544,840 - -1.2
544,992 + MPMX19_05061 0.27 -1.0
544,992 + MPMX19_05061 0.27 +0.5
544,993 - MPMX19_05061 0.27 +0.3
544,993 - MPMX19_05061 0.27 -1.3
544,993 - MPMX19_05061 0.27 -0.9
544,993 - MPMX19_05061 0.27 +0.1
544,993 - MPMX19_05061 0.27 -0.5
545,046 + MPMX19_05061 0.41 +0.1
545,046 + MPMX19_05061 0.41 +0.2
545,047 - MPMX19_05061 0.41 -0.9
545,047 - MPMX19_05061 0.41 -0.1
545,049 + MPMX19_05061 0.42 -1.2
545,049 + MPMX19_05061 0.42 -0.1
545,049 + MPMX19_05061 0.42 -1.1
545,049 + MPMX19_05061 0.42 +1.4
545,049 + MPMX19_05061 0.42 +0.1
545,049 + MPMX19_05061 0.42 -0.4
545,049 + MPMX19_05061 0.42 +0.7
545,049 + MPMX19_05061 0.42 +0.3
545,049 + MPMX19_05061 0.42 +0.1
545,049 + MPMX19_05061 0.42 -0.4
545,049 + MPMX19_05061 0.42 -0.1
545,049 + MPMX19_05061 0.42 -1.2
545,049 + MPMX19_05061 0.42 -1.7
545,049 + MPMX19_05061 0.42 -1.9
545,049 + MPMX19_05061 0.42 +0.3
545,049 + MPMX19_05061 0.42 -1.8
545,049 + MPMX19_05061 0.42 -0.3
545,049 + MPMX19_05061 0.42 -0.4
545,050 - MPMX19_05061 0.42 +0.9
545,050 - MPMX19_05061 0.42 -0.9
545,050 - MPMX19_05061 0.42 -0.5
545,050 - MPMX19_05061 0.42 -0.7
545,050 - MPMX19_05061 0.42 +0.3
545,050 - MPMX19_05061 0.42 -0.7
545,050 - MPMX19_05061 0.42 -0.8
545,050 - MPMX19_05061 0.42 +0.7
545,050 - MPMX19_05061 0.42 +0.1
545,050 - MPMX19_05061 0.42 -0.6
545,281 + -0.4
545,281 + -0.7
545,356 + +0.2
545,356 + -1.1
545,356 + +0.3
545,361 + -0.4
545,361 + -1.4
545,364 + +1.1
545,365 - -0.3
545,366 + +0.6
545,367 - -0.9
545,367 - -0.6
545,373 - +1.2
545,439 + +0.1
545,440 - -0.7
545,440 - -1.6
545,511 + +1.5
545,511 + -1.1
545,512 - -0.7
545,599 + -0.3
545,632 + -1.4
545,632 + -0.3
545,632 + -0.7
545,633 - -0.6
545,633 - +0.5
545,633 - +0.1
545,633 - -1.9
545,704 + MPMX19_05062 0.40 +0.1
545,884 - -0.4
545,884 - -1.3
545,884 - +1.1
545,960 + -0.1
545,960 + +1.1
545,960 + -1.5
545,960 + +0.3
545,961 - -0.5
545,961 - +0.5
545,970 - -1.3
545,970 - -0.6
545,970 - -1.9
546,029 - +0.5
546,029 - +1.3
546,062 + +0.7
546,585 + MPMX19_05063 0.61 -1.0
546,585 + MPMX19_05063 0.61 +0.1
546,585 + MPMX19_05063 0.61 +1.1
546,585 + MPMX19_05063 0.61 -2.2
546,585 + MPMX19_05063 0.61 -0.5
546,585 + MPMX19_05063 0.61 +0.5
546,585 + MPMX19_05063 0.61 -0.3
546,585 + MPMX19_05063 0.61 +1.3
546,585 + MPMX19_05063 0.61 +0.3
546,585 + MPMX19_05063 0.61 +0.3
546,585 + MPMX19_05063 0.61 +1.1
546,585 - MPMX19_05063 0.61 +0.1
546,586 - MPMX19_05063 0.61 -1.4
546,586 - MPMX19_05063 0.61 -0.8
546,586 - MPMX19_05063 0.61 +0.1
546,586 - MPMX19_05063 0.61 +0.9
546,586 - MPMX19_05063 0.61 +2.8
546,586 - MPMX19_05063 0.61 -0.5
546,586 - MPMX19_05063 0.61 +0.1
546,586 - MPMX19_05063 0.61 -0.5
546,612 + MPMX19_05063 0.63 -0.7
546,612 + MPMX19_05063 0.63 +0.8
546,613 - MPMX19_05063 0.63 +0.5
546,613 - MPMX19_05063 0.63 -1.1
546,649 - MPMX19_05063 0.67 -0.5

Or see this region's nucleotide sequence