Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05039 and MPMX19_05040 are separated by 238 nucleotides MPMX19_05040 and MPMX19_05041 overlap by 4 nucleotides MPMX19_05041 and MPMX19_05042 are separated by 204 nucleotides MPMX19_05042 and MPMX19_05043 are separated by 77 nucleotides
MPMX19_05039: MPMX19_05039 - ATP synthase subunit beta, at 523,443 to 524,906
_05039
MPMX19_05040: MPMX19_05040 - hypothetical protein, at 525,145 to 525,705
_05040
MPMX19_05041: MPMX19_05041 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 525,702 to 526,760
_05041
MPMX19_05042: MPMX19_05042 - hypothetical protein, at 526,965 to 527,513
_05042
MPMX19_05043: MPMX19_05043 - hypothetical protein, at 527,591 to 528,196
_05043
Position (kb) 525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.146 kb on + strand at 525.251 kb on + strand, within MPMX19_05040 at 525.252 kb on - strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.469 kb on + strand, within MPMX19_05040 at 525.470 kb on - strand, within MPMX19_05040 at 525.470 kb on - strand, within MPMX19_05040 at 525.566 kb on + strand, within MPMX19_05040 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.574 kb on - strand, within MPMX19_05041 at 526.704 kb on + strand at 526.704 kb on + strand at 526.704 kb on + strand at 526.704 kb on + strand at 526.705 kb on - strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.845 kb on + strand at 526.846 kb on - strand at 526.876 kb on + strand at 526.977 kb on + strand at 526.978 kb on - strand at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.109 kb on + strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.110 kb on - strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.178 kb on + strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.179 kb on - strand, within MPMX19_05042 at 527.184 kb on + strand, within MPMX19_05042 at 527.184 kb on + strand, within MPMX19_05042 at 527.185 kb on - strand, within MPMX19_05042 at 527.185 kb on - strand, within MPMX19_05042 at 527.209 kb on - strand, within MPMX19_05042 at 527.209 kb on - strand, within MPMX19_05042 at 527.271 kb on + strand, within MPMX19_05042 at 527.271 kb on + strand, within MPMX19_05042 at 527.280 kb on + strand, within MPMX19_05042 at 527.281 kb on - strand, within MPMX19_05042 at 527.322 kb on + strand, within MPMX19_05042 at 527.322 kb on + strand, within MPMX19_05042 at 527.322 kb on + strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.323 kb on - strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.325 kb on + strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.326 kb on - strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.355 kb on + strand, within MPMX19_05042 at 527.373 kb on + strand, within MPMX19_05042 at 527.373 kb on + strand, within MPMX19_05042 at 527.374 kb on - strand, within MPMX19_05042 at 527.374 kb on - strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.388 kb on + strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.389 kb on - strand, within MPMX19_05042 at 527.469 kb on + strand at 527.469 kb on + strand at 527.469 kb on + strand at 527.469 kb on + strand at 527.470 kb on - strand at 527.470 kb on - strand at 527.596 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.621 kb on + strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.622 kb on - strand at 527.641 kb on - strand at 527.641 kb on - strand at 527.753 kb on + strand, within MPMX19_05043 at 527.754 kb on - strand, within MPMX19_05043
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 525,085 + -0.3 525,085 + -0.4 525,085 + +0.3 525,085 + -0.5 525,085 + -1.5 525,085 + +0.2 525,085 + +0.6 525,085 + -0.0 525,085 + -1.2 525,086 - +2.1 525,086 - -0.3 525,086 - +1.6 525,086 - +1.5 525,086 - -0.5 525,086 - -0.5 525,086 - -0.5 525,086 - -0.5 525,086 - -1.2 525,086 - -0.6 525,086 - +0.8 525,086 - -0.3 525,146 + -0.3 525,251 + MPMX19_05040 0.19 -0.7 525,252 - MPMX19_05040 0.19 -0.3 525,308 + MPMX19_05040 0.29 -0.1 525,308 + MPMX19_05040 0.29 -0.3 525,308 + MPMX19_05040 0.29 +0.5 525,308 + MPMX19_05040 0.29 +0.2 525,308 + MPMX19_05040 0.29 -1.5 525,308 + MPMX19_05040 0.29 +1.9 525,308 + MPMX19_05040 0.29 +0.7 525,308 + MPMX19_05040 0.29 -1.5 525,308 + MPMX19_05040 0.29 -2.0 525,308 + MPMX19_05040 0.29 -0.0 525,309 - MPMX19_05040 0.29 -0.7 525,309 - MPMX19_05040 0.29 -1.1 525,309 - MPMX19_05040 0.29 +0.2 525,309 - MPMX19_05040 0.29 -0.3 525,309 - MPMX19_05040 0.29 -0.8 525,469 + MPMX19_05040 0.58 -0.2 525,470 - MPMX19_05040 0.58 +1.1 525,470 - MPMX19_05040 0.58 +0.2 525,566 + MPMX19_05040 0.75 +2.7 526,044 + MPMX19_05041 0.32 -1.1 526,044 + MPMX19_05041 0.32 -0.3 526,044 + MPMX19_05041 0.32 -0.7 526,044 + MPMX19_05041 0.32 +1.1 526,044 + MPMX19_05041 0.32 -0.5 526,044 + MPMX19_05041 0.32 -1.0 526,044 + MPMX19_05041 0.32 -0.9 526,044 + MPMX19_05041 0.32 -0.3 526,045 - MPMX19_05041 0.32 -1.2 526,045 - MPMX19_05041 0.32 -0.3 526,045 - MPMX19_05041 0.32 -3.1 526,045 - MPMX19_05041 0.32 -1.0 526,045 - MPMX19_05041 0.32 -1.6 526,045 - MPMX19_05041 0.32 +0.5 526,045 - MPMX19_05041 0.32 -0.6 526,045 - MPMX19_05041 0.32 +0.1 526,045 - MPMX19_05041 0.32 -1.1 526,045 - MPMX19_05041 0.32 +0.2 526,573 + MPMX19_05041 0.82 -0.1 526,573 + MPMX19_05041 0.82 -1.2 526,573 + MPMX19_05041 0.82 -0.6 526,574 - MPMX19_05041 0.82 -0.5 526,704 + -0.7 526,704 + -0.5 526,704 + +0.2 526,704 + -1.4 526,705 - -0.5 526,845 + -0.9 526,845 + -0.9 526,845 + -0.4 526,845 + -0.5 526,846 - +1.1 526,876 + -1.4 526,977 + -1.9 526,978 - -0.0 527,109 + MPMX19_05042 0.26 -1.3 527,109 + MPMX19_05042 0.26 -1.2 527,109 + MPMX19_05042 0.26 -0.1 527,109 + MPMX19_05042 0.26 -0.4 527,109 + MPMX19_05042 0.26 -1.3 527,109 + MPMX19_05042 0.26 -2.8 527,110 - MPMX19_05042 0.26 -0.3 527,110 - MPMX19_05042 0.26 +0.6 527,110 - MPMX19_05042 0.26 -1.4 527,110 - MPMX19_05042 0.26 +0.3 527,110 - MPMX19_05042 0.26 -1.9 527,110 - MPMX19_05042 0.26 -2.0 527,110 - MPMX19_05042 0.26 -0.2 527,110 - MPMX19_05042 0.26 -0.9 527,110 - MPMX19_05042 0.26 -0.9 527,110 - MPMX19_05042 0.26 +0.7 527,110 - MPMX19_05042 0.26 +0.7 527,110 - MPMX19_05042 0.26 -0.1 527,178 + MPMX19_05042 0.39 -1.5 527,178 + MPMX19_05042 0.39 -0.4 527,178 + MPMX19_05042 0.39 -0.9 527,178 + MPMX19_05042 0.39 -0.2 527,178 + MPMX19_05042 0.39 -0.0 527,179 - MPMX19_05042 0.39 -0.5 527,179 - MPMX19_05042 0.39 -1.7 527,179 - MPMX19_05042 0.39 +0.1 527,179 - MPMX19_05042 0.39 -0.9 527,184 + MPMX19_05042 0.40 +0.5 527,184 + MPMX19_05042 0.40 -0.3 527,185 - MPMX19_05042 0.40 -1.4 527,185 - MPMX19_05042 0.40 -1.9 527,209 - MPMX19_05042 0.44 -1.4 527,209 - MPMX19_05042 0.44 +0.3 527,271 + MPMX19_05042 0.56 -1.1 527,271 + MPMX19_05042 0.56 -0.7 527,280 + MPMX19_05042 0.57 +0.4 527,281 - MPMX19_05042 0.58 -1.6 527,322 + MPMX19_05042 0.65 -0.4 527,322 + MPMX19_05042 0.65 +0.8 527,322 + MPMX19_05042 0.65 +1.3 527,323 - MPMX19_05042 0.65 +1.1 527,323 - MPMX19_05042 0.65 -0.6 527,323 - MPMX19_05042 0.65 -0.9 527,323 - MPMX19_05042 0.65 -0.3 527,325 + MPMX19_05042 0.66 -0.9 527,325 + MPMX19_05042 0.66 -1.8 527,325 + MPMX19_05042 0.66 -0.9 527,325 + MPMX19_05042 0.66 -1.8 527,326 - MPMX19_05042 0.66 +0.3 527,326 - MPMX19_05042 0.66 +1.4 527,326 - MPMX19_05042 0.66 -0.7 527,326 - MPMX19_05042 0.66 -0.0 527,326 - MPMX19_05042 0.66 +0.3 527,326 - MPMX19_05042 0.66 -0.3 527,355 + MPMX19_05042 0.71 -0.4 527,355 + MPMX19_05042 0.71 -0.4 527,355 + MPMX19_05042 0.71 -1.8 527,355 + MPMX19_05042 0.71 +0.5 527,373 + MPMX19_05042 0.74 -1.4 527,373 + MPMX19_05042 0.74 +0.8 527,374 - MPMX19_05042 0.74 -1.5 527,374 - MPMX19_05042 0.74 -0.5 527,388 + MPMX19_05042 0.77 -1.3 527,388 + MPMX19_05042 0.77 -0.5 527,388 + MPMX19_05042 0.77 -0.1 527,388 + MPMX19_05042 0.77 -0.3 527,388 + MPMX19_05042 0.77 -1.3 527,388 + MPMX19_05042 0.77 -0.8 527,388 + MPMX19_05042 0.77 -0.9 527,388 + MPMX19_05042 0.77 -1.0 527,388 + MPMX19_05042 0.77 -1.1 527,388 + MPMX19_05042 0.77 +1.5 527,388 + MPMX19_05042 0.77 -0.2 527,388 + MPMX19_05042 0.77 -0.7 527,388 + MPMX19_05042 0.77 -1.5 527,388 + MPMX19_05042 0.77 +0.5 527,388 + MPMX19_05042 0.77 +0.1 527,388 + MPMX19_05042 0.77 -0.3 527,388 + MPMX19_05042 0.77 -0.9 527,388 + MPMX19_05042 0.77 -1.8 527,388 + MPMX19_05042 0.77 +1.1 527,388 + MPMX19_05042 0.77 -0.8 527,388 + MPMX19_05042 0.77 -0.2 527,388 + MPMX19_05042 0.77 +0.3 527,389 - MPMX19_05042 0.77 -0.9 527,389 - MPMX19_05042 0.77 +0.3 527,389 - MPMX19_05042 0.77 +0.4 527,389 - MPMX19_05042 0.77 -1.3 527,389 - MPMX19_05042 0.77 -1.0 527,389 - MPMX19_05042 0.77 -1.8 527,389 - MPMX19_05042 0.77 -1.4 527,389 - MPMX19_05042 0.77 -0.3 527,389 - MPMX19_05042 0.77 -1.0 527,389 - MPMX19_05042 0.77 -0.0 527,389 - MPMX19_05042 0.77 -0.1 527,389 - MPMX19_05042 0.77 -1.1 527,389 - MPMX19_05042 0.77 -0.6 527,389 - MPMX19_05042 0.77 -1.8 527,389 - MPMX19_05042 0.77 -0.6 527,389 - MPMX19_05042 0.77 -0.5 527,389 - MPMX19_05042 0.77 +0.2 527,389 - MPMX19_05042 0.77 +1.3 527,389 - MPMX19_05042 0.77 +0.7 527,389 - MPMX19_05042 0.77 -0.6 527,389 - MPMX19_05042 0.77 -0.5 527,389 - MPMX19_05042 0.77 +0.5 527,389 - MPMX19_05042 0.77 -0.2 527,389 - MPMX19_05042 0.77 +0.2 527,389 - MPMX19_05042 0.77 +0.2 527,469 + -0.8 527,469 + -0.2 527,469 + -1.3 527,469 + -1.4 527,470 - +1.3 527,470 - -1.5 527,596 + -0.2 527,621 + +2.1 527,621 + +0.5 527,621 + -0.7 527,621 + +0.4 527,621 + -0.6 527,621 + -1.3 527,621 + -1.4 527,621 + -0.3 527,621 + -0.6 527,621 + -0.5 527,621 + -1.2 527,621 + +0.5 527,621 + -0.3 527,621 + -0.8 527,621 + -0.8 527,621 + -0.6 527,621 + -0.1 527,621 + -0.7 527,622 - -0.1 527,622 - -1.4 527,622 - +1.0 527,622 - -0.5 527,622 - +1.5 527,622 - +0.5 527,622 - -0.3 527,622 - -0.6 527,622 - -0.1 527,622 - -1.4 527,622 - -0.5 527,622 - -0.3 527,622 - -1.3 527,622 - +0.1 527,622 - +1.5 527,622 - +1.1 527,622 - -1.3 527,622 - +0.3 527,622 - -0.7 527,622 - +0.4 527,622 - -1.9 527,622 - -0.6 527,622 - +0.6 527,622 - -0.2 527,622 - -0.1 527,622 - +1.1 527,622 - +0.3 527,641 - -0.1 527,641 - -2.6 527,753 + MPMX19_05043 0.27 -0.0 527,754 - MPMX19_05043 0.27 +0.8
Or see this region's nucleotide sequence