Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05038

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05035 and MPMX19_05036 overlap by 4 nucleotidesMPMX19_05036 and MPMX19_05037 are separated by 1 nucleotidesMPMX19_05037 and MPMX19_05038 overlap by 4 nucleotidesMPMX19_05038 and MPMX19_05039 overlap by 4 nucleotides MPMX19_05035: MPMX19_05035 - ATP synthase subunit a, at 521,741 to 522,415 _05035 MPMX19_05036: MPMX19_05036 - hypothetical protein, at 522,412 to 522,711 _05036 MPMX19_05037: MPMX19_05037 - hypothetical protein, at 522,713 to 522,991 _05037 MPMX19_05038: MPMX19_05038 - ATP synthase epsilon chain, at 522,988 to 523,446 _05038 MPMX19_05039: MPMX19_05039 - ATP synthase subunit beta, at 523,443 to 524,906 _05039 Position (kb) 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.153 kb on + strand, within MPMX19_05035at 522.153 kb on + strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.575 kb on + strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.576 kb on - strand, within MPMX19_05036at 522.604 kb on + strand, within MPMX19_05036at 522.604 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.611 kb on + strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 522.612 kb on - strand, within MPMX19_05036at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.058 kb on + strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.059 kb on - strand, within MPMX19_05038at 523.771 kb on + strand, within MPMX19_05039at 523.841 kb on - strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.942 kb on + strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039at 523.943 kb on - strand, within MPMX19_05039

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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522,012 + MPMX19_05035 0.40 -0.3
522,012 + MPMX19_05035 0.40 -0.1
522,012 + MPMX19_05035 0.40 -0.9
522,012 + MPMX19_05035 0.40 -0.4
522,012 + MPMX19_05035 0.40 -1.5
522,012 + MPMX19_05035 0.40 +0.3
522,013 - MPMX19_05035 0.40 +0.3
522,013 - MPMX19_05035 0.40 +0.1
522,013 - MPMX19_05035 0.40 -1.5
522,013 - MPMX19_05035 0.40 +0.5
522,013 - MPMX19_05035 0.40 +0.1
522,013 - MPMX19_05035 0.40 -0.2
522,013 - MPMX19_05035 0.40 -0.8
522,013 - MPMX19_05035 0.40 -1.8
522,153 + MPMX19_05035 0.61 +0.3
522,153 + MPMX19_05035 0.61 -0.6
522,154 - MPMX19_05035 0.61 -0.8
522,154 - MPMX19_05035 0.61 +0.1
522,154 - MPMX19_05035 0.61 +0.2
522,575 + MPMX19_05036 0.54 -0.6
522,575 + MPMX19_05036 0.54 -1.0
522,575 + MPMX19_05036 0.54 -0.0
522,575 + MPMX19_05036 0.54 +0.9
522,576 - MPMX19_05036 0.55 +0.3
522,576 - MPMX19_05036 0.55 +1.1
522,576 - MPMX19_05036 0.55 -0.1
522,604 + MPMX19_05036 0.64 -0.8
522,604 + MPMX19_05036 0.64 -1.2
522,611 + MPMX19_05036 0.66 -1.5
522,611 + MPMX19_05036 0.66 -0.7
522,611 + MPMX19_05036 0.66 -0.0
522,611 + MPMX19_05036 0.66 -1.1
522,611 + MPMX19_05036 0.66 +0.5
522,611 + MPMX19_05036 0.66 -0.5
522,611 + MPMX19_05036 0.66 -0.4
522,611 + MPMX19_05036 0.66 -0.9
522,611 + MPMX19_05036 0.66 -0.7
522,612 - MPMX19_05036 0.67 -1.1
522,612 - MPMX19_05036 0.67 -0.9
522,612 - MPMX19_05036 0.67 +1.2
522,612 - MPMX19_05036 0.67 -1.4
522,612 - MPMX19_05036 0.67 +1.7
522,612 - MPMX19_05036 0.67 -0.8
522,612 - MPMX19_05036 0.67 +1.1
522,612 - MPMX19_05036 0.67 +0.9
522,612 - MPMX19_05036 0.67 +0.1
522,612 - MPMX19_05036 0.67 +0.1
523,058 + MPMX19_05038 0.15 +1.1
523,058 + MPMX19_05038 0.15 -1.8
523,058 + MPMX19_05038 0.15 -0.2
523,058 + MPMX19_05038 0.15 -0.0
523,058 + MPMX19_05038 0.15 -1.4
523,058 + MPMX19_05038 0.15 -2.2
523,058 + MPMX19_05038 0.15 -1.4
523,059 - MPMX19_05038 0.15 +1.8
523,059 - MPMX19_05038 0.15 -0.2
523,059 - MPMX19_05038 0.15 +0.9
523,059 - MPMX19_05038 0.15 +2.1
523,059 - MPMX19_05038 0.15 -1.1
523,059 - MPMX19_05038 0.15 -1.4
523,059 - MPMX19_05038 0.15 +0.3
523,771 + MPMX19_05039 0.22 -0.4
523,841 - MPMX19_05039 0.27 +0.9
523,942 + MPMX19_05039 0.34 -0.4
523,942 + MPMX19_05039 0.34 -0.1
523,942 + MPMX19_05039 0.34 +0.5
523,942 + MPMX19_05039 0.34 +0.7
523,942 + MPMX19_05039 0.34 -0.2
523,942 + MPMX19_05039 0.34 +0.2
523,942 + MPMX19_05039 0.34 -2.8
523,942 + MPMX19_05039 0.34 -1.2
523,942 + MPMX19_05039 0.34 -1.6
523,942 + MPMX19_05039 0.34 -0.1
523,942 + MPMX19_05039 0.34 -1.2
523,942 + MPMX19_05039 0.34 +0.7
523,942 + MPMX19_05039 0.34 -0.0
523,942 + MPMX19_05039 0.34 -1.2
523,942 + MPMX19_05039 0.34 -0.2
523,942 + MPMX19_05039 0.34 -0.6
523,942 + MPMX19_05039 0.34 -1.2
523,943 - MPMX19_05039 0.34 -0.1
523,943 - MPMX19_05039 0.34 +0.9
523,943 - MPMX19_05039 0.34 -0.2
523,943 - MPMX19_05039 0.34 -0.1
523,943 - MPMX19_05039 0.34 -1.5
523,943 - MPMX19_05039 0.34 -0.9
523,943 - MPMX19_05039 0.34 -1.6
523,943 - MPMX19_05039 0.34 -0.7
523,943 - MPMX19_05039 0.34 -1.4

Or see this region's nucleotide sequence