Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05020 and MPMX19_05021 are separated by 132 nucleotides MPMX19_05021 and MPMX19_05022 are separated by 440 nucleotides
MPMX19_05020: MPMX19_05020 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 503,011 to 505,011
_05020
MPMX19_05021: MPMX19_05021 - Methylmalonyl-CoA mutase, at 505,144 to 507,297
_05021
MPMX19_05022: MPMX19_05022 - hypothetical protein, at 507,738 to 508,430
_05022
Position (kb) 505
506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.154 kb on + strand, within MPMX19_05020 at 504.155 kb on - strand, within MPMX19_05020 at 504.155 kb on - strand, within MPMX19_05020 at 504.157 kb on + strand, within MPMX19_05020 at 504.158 kb on - strand, within MPMX19_05020 at 504.158 kb on - strand, within MPMX19_05020 at 504.241 kb on + strand, within MPMX19_05020 at 504.241 kb on + strand, within MPMX19_05020 at 504.241 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.244 kb on + strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.245 kb on - strand, within MPMX19_05020 at 504.346 kb on + strand, within MPMX19_05020 at 504.346 kb on + strand, within MPMX19_05020 at 504.571 kb on + strand, within MPMX19_05020 at 504.571 kb on + strand, within MPMX19_05020 at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.015 kb on + strand at 505.016 kb on - strand at 505.016 kb on - strand at 505.017 kb on + strand at 505.017 kb on + strand at 505.017 kb on + strand at 505.017 kb on + strand at 505.017 kb on + strand at 505.018 kb on - strand at 505.018 kb on - strand at 505.018 kb on - strand at 505.018 kb on - strand at 505.018 kb on - strand at 505.023 kb on + strand at 505.023 kb on + strand at 505.023 kb on + strand at 505.023 kb on + strand at 505.023 kb on + strand at 505.024 kb on - strand at 505.024 kb on - strand at 505.024 kb on - strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.110 kb on + strand at 505.111 kb on - strand at 505.111 kb on - strand at 505.111 kb on - strand at 505.111 kb on - strand at 505.111 kb on - strand at 505.111 kb on - strand at 505.121 kb on + strand at 505.121 kb on + strand at 505.121 kb on + strand at 505.121 kb on + strand at 505.122 kb on - strand at 505.122 kb on - strand at 505.270 kb on + strand at 505.270 kb on + strand at 505.271 kb on - strand at 505.271 kb on - strand at 505.354 kb on + strand at 505.354 kb on + strand at 505.355 kb on - strand at 505.355 kb on - strand at 505.355 kb on - strand at 505.384 kb on + strand, within MPMX19_05021 at 505.385 kb on - strand, within MPMX19_05021 at 505.423 kb on + strand, within MPMX19_05021 at 505.424 kb on - strand, within MPMX19_05021 at 505.424 kb on - strand, within MPMX19_05021 at 505.424 kb on - strand, within MPMX19_05021 at 505.651 kb on + strand, within MPMX19_05021 at 505.651 kb on + strand, within MPMX19_05021 at 505.651 kb on + strand, within MPMX19_05021 at 505.652 kb on - strand, within MPMX19_05021 at 505.723 kb on - strand, within MPMX19_05021 at 505.747 kb on + strand, within MPMX19_05021 at 505.747 kb on + strand, within MPMX19_05021 at 505.747 kb on + strand, within MPMX19_05021 at 505.747 kb on + strand, within MPMX19_05021 at 505.747 kb on + strand, within MPMX19_05021 at 505.748 kb on - strand, within MPMX19_05021 at 505.748 kb on - strand, within MPMX19_05021 at 505.748 kb on - strand, within MPMX19_05021 at 505.748 kb on - strand, within MPMX19_05021 at 505.753 kb on + strand, within MPMX19_05021 at 505.754 kb on - strand, within MPMX19_05021 at 505.798 kb on + strand, within MPMX19_05021 at 505.798 kb on + strand, within MPMX19_05021 at 505.798 kb on + strand, within MPMX19_05021 at 505.799 kb on - strand, within MPMX19_05021 at 505.799 kb on - strand, within MPMX19_05021 at 505.915 kb on + strand, within MPMX19_05021 at 505.915 kb on + strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 505.916 kb on - strand, within MPMX19_05021 at 506.146 kb on + strand, within MPMX19_05021 at 506.146 kb on + strand, within MPMX19_05021 at 506.146 kb on + strand, within MPMX19_05021 at 506.147 kb on - strand, within MPMX19_05021 at 506.147 kb on - strand, within MPMX19_05021 at 506.147 kb on - strand, within MPMX19_05021 at 506.344 kb on + strand, within MPMX19_05021 at 506.344 kb on + strand, within MPMX19_05021 at 506.344 kb on + strand, within MPMX19_05021 at 506.344 kb on + strand, within MPMX19_05021 at 506.345 kb on - strand, within MPMX19_05021 at 506.345 kb on - strand, within MPMX19_05021 at 506.345 kb on - strand, within MPMX19_05021 at 506.530 kb on + strand, within MPMX19_05021 at 506.530 kb on + strand, within MPMX19_05021 at 506.530 kb on + strand, within MPMX19_05021 at 506.530 kb on + strand, within MPMX19_05021 at 506.531 kb on - strand, within MPMX19_05021 at 506.531 kb on - strand, within MPMX19_05021 at 506.531 kb on - strand, within MPMX19_05021 at 506.815 kb on + strand, within MPMX19_05021 at 506.827 kb on + strand, within MPMX19_05021 at 506.827 kb on + strand, within MPMX19_05021 at 506.828 kb on - strand, within MPMX19_05021 at 506.828 kb on - strand, within MPMX19_05021 at 507.197 kb on - strand at 507.197 kb on - strand at 507.220 kb on + strand at 507.220 kb on + strand at 507.220 kb on + strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.221 kb on - strand at 507.291 kb on + strand at 507.362 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.420 kb on + strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.421 kb on - strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.441 kb on + strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.442 kb on - strand at 507.461 kb on + strand at 507.462 kb on - strand at 507.474 kb on + strand at 507.474 kb on + strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.475 kb on - strand at 507.765 kb on + strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.801 kb on + strand at 507.801 kb on + strand at 507.802 kb on - strand at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.122 kb on - strand, within MPMX19_05022 at 508.122 kb on - strand, within MPMX19_05022
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 504,154 + MPMX19_05020 0.57 -1.1 504,154 + MPMX19_05020 0.57 +1.7 504,154 + MPMX19_05020 0.57 +0.4 504,154 + MPMX19_05020 0.57 +3.1 504,154 + MPMX19_05020 0.57 -0.3 504,154 + MPMX19_05020 0.57 -1.2 504,154 + MPMX19_05020 0.57 +0.5 504,154 + MPMX19_05020 0.57 +0.3 504,154 + MPMX19_05020 0.57 +0.3 504,155 - MPMX19_05020 0.57 -2.4 504,155 - MPMX19_05020 0.57 +0.5 504,157 + MPMX19_05020 0.57 +0.1 504,158 - MPMX19_05020 0.57 +1.7 504,158 - MPMX19_05020 0.57 +0.2 504,241 + MPMX19_05020 0.61 +0.8 504,241 + MPMX19_05020 0.61 +1.5 504,241 + MPMX19_05020 0.61 +0.5 504,244 + MPMX19_05020 0.62 -0.7 504,244 + MPMX19_05020 0.62 -0.2 504,244 + MPMX19_05020 0.62 +0.1 504,244 + MPMX19_05020 0.62 -1.1 504,244 + MPMX19_05020 0.62 -0.2 504,244 + MPMX19_05020 0.62 -0.3 504,244 + MPMX19_05020 0.62 -0.4 504,244 + MPMX19_05020 0.62 -0.6 504,244 + MPMX19_05020 0.62 -2.3 504,244 + MPMX19_05020 0.62 -0.6 504,244 + MPMX19_05020 0.62 -1.6 504,244 + MPMX19_05020 0.62 -0.7 504,244 + MPMX19_05020 0.62 -0.3 504,244 + MPMX19_05020 0.62 -2.2 504,244 + MPMX19_05020 0.62 -1.2 504,244 + MPMX19_05020 0.62 +0.3 504,244 + MPMX19_05020 0.62 +0.1 504,244 + MPMX19_05020 0.62 -1.1 504,244 + MPMX19_05020 0.62 -1.1 504,244 + MPMX19_05020 0.62 -0.7 504,245 - MPMX19_05020 0.62 -0.7 504,245 - MPMX19_05020 0.62 +0.5 504,245 - MPMX19_05020 0.62 +1.7 504,245 - MPMX19_05020 0.62 -0.5 504,245 - MPMX19_05020 0.62 +0.1 504,245 - MPMX19_05020 0.62 -0.2 504,245 - MPMX19_05020 0.62 -0.7 504,245 - MPMX19_05020 0.62 +1.1 504,245 - MPMX19_05020 0.62 -0.2 504,245 - MPMX19_05020 0.62 -0.5 504,346 + MPMX19_05020 0.67 +0.3 504,346 + MPMX19_05020 0.67 +0.1 504,571 + MPMX19_05020 0.78 -0.8 504,571 + MPMX19_05020 0.78 +0.3 505,015 + -1.3 505,015 + -0.3 505,015 + +0.1 505,015 + -0.2 505,015 + -0.7 505,015 + +0.3 505,015 + -1.2 505,015 + -1.1 505,015 + +0.2 505,015 + -0.9 505,015 + -1.4 505,016 - -1.9 505,016 - -0.5 505,017 + -0.2 505,017 + -0.4 505,017 + +0.3 505,017 + -0.1 505,017 + -1.1 505,018 - +1.1 505,018 - +0.5 505,018 - -0.1 505,018 - -0.2 505,018 - +1.4 505,023 + -1.4 505,023 + -0.8 505,023 + -1.1 505,023 + -1.9 505,023 + -3.0 505,024 - -2.3 505,024 - +0.5 505,024 - +1.1 505,110 + -0.2 505,110 + -1.0 505,110 + +0.2 505,110 + +0.3 505,110 + +0.3 505,110 + -1.6 505,110 + +0.8 505,110 + -0.1 505,110 + +0.6 505,110 + +0.2 505,110 + -2.1 505,110 + -1.2 505,110 + -2.0 505,111 - -1.8 505,111 - -0.2 505,111 - +1.1 505,111 - +1.7 505,111 - +1.1 505,111 - +0.1 505,121 + +0.7 505,121 + +0.1 505,121 + +1.6 505,121 + -1.1 505,122 - -0.9 505,122 - +0.1 505,270 + +1.7 505,270 + +0.5 505,271 - +0.1 505,271 - -0.7 505,354 + -0.9 505,354 + -0.2 505,355 - +0.1 505,355 - +1.4 505,355 - -0.7 505,384 + MPMX19_05021 0.11 +0.3 505,385 - MPMX19_05021 0.11 -0.7 505,423 + MPMX19_05021 0.13 +0.5 505,424 - MPMX19_05021 0.13 +2.1 505,424 - MPMX19_05021 0.13 -0.7 505,424 - MPMX19_05021 0.13 +0.5 505,651 + MPMX19_05021 0.24 +0.5 505,651 + MPMX19_05021 0.24 +0.1 505,651 + MPMX19_05021 0.24 +0.1 505,652 - MPMX19_05021 0.24 +1.2 505,723 - MPMX19_05021 0.27 +1.5 505,747 + MPMX19_05021 0.28 +2.7 505,747 + MPMX19_05021 0.28 +0.8 505,747 + MPMX19_05021 0.28 +1.7 505,747 + MPMX19_05021 0.28 +0.8 505,747 + MPMX19_05021 0.28 +0.5 505,748 - MPMX19_05021 0.28 -1.1 505,748 - MPMX19_05021 0.28 +0.9 505,748 - MPMX19_05021 0.28 -0.9 505,748 - MPMX19_05021 0.28 -0.2 505,753 + MPMX19_05021 0.28 +0.3 505,754 - MPMX19_05021 0.28 -0.4 505,798 + MPMX19_05021 0.30 +0.1 505,798 + MPMX19_05021 0.30 -1.2 505,798 + MPMX19_05021 0.30 +1.1 505,799 - MPMX19_05021 0.30 -0.4 505,799 - MPMX19_05021 0.30 -0.2 505,915 + MPMX19_05021 0.36 -0.2 505,915 + MPMX19_05021 0.36 +1.5 505,916 - MPMX19_05021 0.36 +0.5 505,916 - MPMX19_05021 0.36 -1.1 505,916 - MPMX19_05021 0.36 +0.1 505,916 - MPMX19_05021 0.36 +0.3 505,916 - MPMX19_05021 0.36 +0.1 505,916 - MPMX19_05021 0.36 -0.7 505,916 - MPMX19_05021 0.36 +0.1 505,916 - MPMX19_05021 0.36 -1.4 505,916 - MPMX19_05021 0.36 -2.0 506,146 + MPMX19_05021 0.47 +0.8 506,146 + MPMX19_05021 0.47 +0.1 506,146 + MPMX19_05021 0.47 +0.8 506,147 - MPMX19_05021 0.47 -0.9 506,147 - MPMX19_05021 0.47 +0.5 506,147 - MPMX19_05021 0.47 -0.5 506,344 + MPMX19_05021 0.56 +0.8 506,344 + MPMX19_05021 0.56 +1.9 506,344 + MPMX19_05021 0.56 -0.7 506,344 + MPMX19_05021 0.56 -1.1 506,345 - MPMX19_05021 0.56 -2.4 506,345 - MPMX19_05021 0.56 -0.0 506,345 - MPMX19_05021 0.56 -0.7 506,530 + MPMX19_05021 0.64 +0.5 506,530 + MPMX19_05021 0.64 +0.5 506,530 + MPMX19_05021 0.64 +0.1 506,530 + MPMX19_05021 0.64 +0.1 506,531 - MPMX19_05021 0.64 +0.5 506,531 - MPMX19_05021 0.64 -0.2 506,531 - MPMX19_05021 0.64 +1.1 506,815 + MPMX19_05021 0.78 -0.7 506,827 + MPMX19_05021 0.78 +0.5 506,827 + MPMX19_05021 0.78 -0.1 506,828 - MPMX19_05021 0.78 -1.1 506,828 - MPMX19_05021 0.78 -0.7 507,197 - -0.6 507,197 - -0.7 507,220 + +0.1 507,220 + -0.5 507,220 + -0.2 507,221 - +1.1 507,221 - +0.5 507,221 - +0.8 507,221 - -0.2 507,221 - -0.2 507,221 - -0.7 507,221 - -0.4 507,221 - +0.1 507,291 + -0.9 507,362 + -0.7 507,420 + -0.1 507,420 + -1.5 507,420 + -0.3 507,420 + -0.6 507,420 + -2.0 507,421 - -0.5 507,421 - -0.2 507,421 - -0.2 507,421 - -0.8 507,421 - -0.2 507,421 - -1.1 507,421 - -0.7 507,441 + -0.0 507,441 + +1.3 507,441 + +0.3 507,441 + -0.8 507,441 + +0.5 507,441 + -0.7 507,441 + +0.5 507,441 + -0.4 507,441 + -0.8 507,441 + -1.5 507,441 + -0.7 507,442 - -2.1 507,442 - -0.9 507,442 - -0.7 507,442 - +1.8 507,442 - -2.1 507,442 - -1.2 507,442 - +0.3 507,442 - +0.1 507,461 + -0.4 507,462 - +2.3 507,474 + -0.0 507,474 + -0.1 507,475 - +0.7 507,475 - -0.2 507,475 - +0.3 507,475 - -0.1 507,765 + -0.3 507,766 - -0.5 507,766 - -0.0 507,766 - -0.6 507,766 - -1.2 507,766 - -1.4 507,801 + +0.6 507,801 + -2.1 507,802 - -0.1 507,945 + MPMX19_05022 0.30 -1.1 507,945 + MPMX19_05022 0.30 -1.2 507,945 + MPMX19_05022 0.30 +0.5 507,945 + MPMX19_05022 0.30 +1.2 507,945 + MPMX19_05022 0.30 -0.9 507,946 - MPMX19_05022 0.30 +0.3 507,946 - MPMX19_05022 0.30 -0.4 507,946 - MPMX19_05022 0.30 -0.2 507,946 - MPMX19_05022 0.30 -0.4 507,946 - MPMX19_05022 0.30 -0.7 507,946 - MPMX19_05022 0.30 -0.9 507,946 - MPMX19_05022 0.30 +0.3 507,946 - MPMX19_05022 0.30 -0.7 507,946 - MPMX19_05022 0.30 -0.5 507,946 - MPMX19_05022 0.30 +0.9 507,946 - MPMX19_05022 0.30 -0.5 508,104 + MPMX19_05022 0.53 -0.7 508,104 + MPMX19_05022 0.53 -1.8 508,104 + MPMX19_05022 0.53 +0.1 508,104 + MPMX19_05022 0.53 -0.5 508,105 - MPMX19_05022 0.53 +0.0 508,105 - MPMX19_05022 0.53 +0.1 508,105 - MPMX19_05022 0.53 +1.3 508,105 - MPMX19_05022 0.53 -0.9 508,105 - MPMX19_05022 0.53 -0.7 508,121 + MPMX19_05022 0.55 -0.0 508,121 + MPMX19_05022 0.55 -1.4 508,121 + MPMX19_05022 0.55 +0.5 508,122 - MPMX19_05022 0.55 +0.9 508,122 - MPMX19_05022 0.55 -1.9
Or see this region's nucleotide sequence