Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05014

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05013 and MPMX19_05014 overlap by 1 nucleotidesMPMX19_05014 and MPMX19_05015 are separated by 112 nucleotidesMPMX19_05015 and MPMX19_05016 are separated by 30 nucleotides MPMX19_05013: MPMX19_05013 - Cytochrome b, at 494,531 to 495,799 _05013 MPMX19_05014: MPMX19_05014 - Cytochrome c1, at 495,799 to 496,560 _05014 MPMX19_05015: MPMX19_05015 - hypothetical protein, at 496,673 to 497,224 _05015 MPMX19_05016: MPMX19_05016 - Sensor histidine kinase RcsC, at 497,255 to 498,133 _05016 Position (kb) 495 496 497Strain fitness (log2 ratio) -2 -1 0 1 2 3at 494.810 kb on + strand, within MPMX19_05013at 494.810 kb on + strand, within MPMX19_05013at 494.810 kb on + strand, within MPMX19_05013at 494.811 kb on - strand, within MPMX19_05013at 494.852 kb on + strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.853 kb on - strand, within MPMX19_05013at 494.876 kb on + strand, within MPMX19_05013at 494.876 kb on + strand, within MPMX19_05013at 494.876 kb on + strand, within MPMX19_05013at 494.877 kb on - strand, within MPMX19_05013at 494.888 kb on + strand, within MPMX19_05013at 494.888 kb on + strand, within MPMX19_05013at 494.889 kb on - strand, within MPMX19_05013at 494.889 kb on - strand, within MPMX19_05013at 494.889 kb on - strand, within MPMX19_05013at 494.966 kb on + strand, within MPMX19_05013at 494.966 kb on + strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 494.967 kb on - strand, within MPMX19_05013at 495.248 kb on + strand, within MPMX19_05013at 495.248 kb on + strand, within MPMX19_05013at 495.249 kb on - strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.326 kb on + strand, within MPMX19_05013at 495.327 kb on - strand, within MPMX19_05013at 495.327 kb on - strand, within MPMX19_05013at 495.327 kb on - strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.347 kb on + strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.348 kb on - strand, within MPMX19_05013at 495.398 kb on + strand, within MPMX19_05013at 495.398 kb on + strand, within MPMX19_05013at 495.399 kb on - strand, within MPMX19_05013at 495.413 kb on + strand, within MPMX19_05013at 495.413 kb on + strand, within MPMX19_05013at 495.413 kb on + strand, within MPMX19_05013at 495.414 kb on - strand, within MPMX19_05013at 495.414 kb on - strand, within MPMX19_05013at 495.414 kb on - strand, within MPMX19_05013at 495.590 kb on + strand, within MPMX19_05013at 495.591 kb on - strand, within MPMX19_05013at 495.650 kb on + strand, within MPMX19_05013at 495.650 kb on + strand, within MPMX19_05013at 495.651 kb on - strand, within MPMX19_05013at 495.651 kb on - strand, within MPMX19_05013at 495.651 kb on - strand, within MPMX19_05013at 495.651 kb on - strand, within MPMX19_05013at 495.653 kb on + strand, within MPMX19_05013at 495.653 kb on + strand, within MPMX19_05013at 495.653 kb on + strand, within MPMX19_05013at 495.654 kb on - strand, within MPMX19_05013at 495.654 kb on - strand, within MPMX19_05013at 495.654 kb on - strand, within MPMX19_05013at 495.654 kb on - strand, within MPMX19_05013at 495.654 kb on - strand, within MPMX19_05013at 495.961 kb on + strand, within MPMX19_05014at 495.961 kb on + strand, within MPMX19_05014at 495.962 kb on - strand, within MPMX19_05014at 496.240 kb on + strand, within MPMX19_05014at 496.240 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.246 kb on + strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.247 kb on - strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.309 kb on + strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.310 kb on - strand, within MPMX19_05014at 496.522 kb on + strandat 496.522 kb on + strandat 496.523 kb on - strandat 496.523 kb on - strandat 496.588 kb on + strandat 496.588 kb on + strandat 496.588 kb on + strandat 496.589 kb on - strandat 496.589 kb on - strandat 496.589 kb on - strandat 496.733 kb on + strand, within MPMX19_05015at 496.733 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.793 kb on + strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.794 kb on - strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.817 kb on + strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 496.818 kb on - strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.006 kb on + strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.007 kb on - strand, within MPMX19_05015at 497.099 kb on + strand, within MPMX19_05015at 497.100 kb on - strand, within MPMX19_05015at 497.100 kb on - strand, within MPMX19_05015at 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.328 kb on + strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strandat 497.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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494,810 + MPMX19_05013 0.22 +2.1
494,810 + MPMX19_05013 0.22 +0.1
494,810 + MPMX19_05013 0.22 +1.1
494,811 - MPMX19_05013 0.22 +0.5
494,852 + MPMX19_05013 0.25 +1.1
494,853 - MPMX19_05013 0.25 +2.1
494,853 - MPMX19_05013 0.25 +2.1
494,853 - MPMX19_05013 0.25 +0.1
494,853 - MPMX19_05013 0.25 +0.8
494,876 + MPMX19_05013 0.27 +1.1
494,876 + MPMX19_05013 0.27 +1.1
494,876 + MPMX19_05013 0.27 +1.1
494,877 - MPMX19_05013 0.27 +0.5
494,888 + MPMX19_05013 0.28 +0.1
494,888 + MPMX19_05013 0.28 +0.5
494,889 - MPMX19_05013 0.28 +1.1
494,889 - MPMX19_05013 0.28 +1.1
494,889 - MPMX19_05013 0.28 +0.1
494,966 + MPMX19_05013 0.34 +0.5
494,966 + MPMX19_05013 0.34 -1.2
494,967 - MPMX19_05013 0.34 -0.9
494,967 - MPMX19_05013 0.34 +0.1
494,967 - MPMX19_05013 0.34 -0.5
494,967 - MPMX19_05013 0.34 -0.4
494,967 - MPMX19_05013 0.34 -0.2
494,967 - MPMX19_05013 0.34 +0.5
495,248 + MPMX19_05013 0.57 +0.1
495,248 + MPMX19_05013 0.57 -0.5
495,249 - MPMX19_05013 0.57 -0.5
495,326 + MPMX19_05013 0.63 +0.8
495,326 + MPMX19_05013 0.63 +2.1
495,326 + MPMX19_05013 0.63 -1.5
495,326 + MPMX19_05013 0.63 +1.1
495,326 + MPMX19_05013 0.63 +0.1
495,326 + MPMX19_05013 0.63 +2.7
495,327 - MPMX19_05013 0.63 +2.1
495,327 - MPMX19_05013 0.63 +0.1
495,327 - MPMX19_05013 0.63 +1.1
495,347 + MPMX19_05013 0.64 -0.2
495,347 + MPMX19_05013 0.64 +2.1
495,347 + MPMX19_05013 0.64 +1.1
495,347 + MPMX19_05013 0.64 +0.5
495,348 - MPMX19_05013 0.64 -0.7
495,348 - MPMX19_05013 0.64 +0.1
495,348 - MPMX19_05013 0.64 +0.3
495,348 - MPMX19_05013 0.64 -0.7
495,348 - MPMX19_05013 0.64 +2.1
495,398 + MPMX19_05013 0.68 +0.1
495,398 + MPMX19_05013 0.68 +0.1
495,399 - MPMX19_05013 0.68 -0.7
495,413 + MPMX19_05013 0.70 +0.5
495,413 + MPMX19_05013 0.70 +0.9
495,413 + MPMX19_05013 0.70 +2.1
495,414 - MPMX19_05013 0.70 +3.1
495,414 - MPMX19_05013 0.70 +1.1
495,414 - MPMX19_05013 0.70 +0.1
495,590 + MPMX19_05013 0.83 +1.1
495,591 - MPMX19_05013 0.84 +0.1
495,650 + MPMX19_05013 0.88 -0.2
495,650 + MPMX19_05013 0.88 +1.1
495,651 - MPMX19_05013 0.88 +0.5
495,651 - MPMX19_05013 0.88 +0.9
495,651 - MPMX19_05013 0.88 +1.1
495,651 - MPMX19_05013 0.88 +1.1
495,653 + MPMX19_05013 0.88 -0.7
495,653 + MPMX19_05013 0.88 +0.1
495,653 + MPMX19_05013 0.88 -0.2
495,654 - MPMX19_05013 0.88 +1.1
495,654 - MPMX19_05013 0.88 +0.1
495,654 - MPMX19_05013 0.88 +0.8
495,654 - MPMX19_05013 0.88 +0.5
495,654 - MPMX19_05013 0.88 -0.9
495,961 + MPMX19_05014 0.21 +0.1
495,961 + MPMX19_05014 0.21 +2.1
495,962 - MPMX19_05014 0.21 -0.5
496,240 + MPMX19_05014 0.58 +0.5
496,240 + MPMX19_05014 0.58 +0.1
496,246 + MPMX19_05014 0.59 +0.1
496,246 + MPMX19_05014 0.59 +0.5
496,246 + MPMX19_05014 0.59 +0.5
496,246 + MPMX19_05014 0.59 +1.1
496,247 - MPMX19_05014 0.59 +1.1
496,247 - MPMX19_05014 0.59 +1.1
496,247 - MPMX19_05014 0.59 +0.5
496,247 - MPMX19_05014 0.59 +2.1
496,309 + MPMX19_05014 0.67 -0.7
496,309 + MPMX19_05014 0.67 -0.5
496,309 + MPMX19_05014 0.67 +2.1
496,309 + MPMX19_05014 0.67 +1.1
496,309 + MPMX19_05014 0.67 +0.5
496,309 + MPMX19_05014 0.67 -0.5
496,310 - MPMX19_05014 0.67 +0.5
496,310 - MPMX19_05014 0.67 +0.1
496,310 - MPMX19_05014 0.67 +1.1
496,522 + +1.1
496,522 + +0.1
496,523 - +0.1
496,523 - -0.9
496,588 + -0.1
496,588 + -1.7
496,588 + -0.1
496,589 - -0.4
496,589 - +0.5
496,589 - -1.1
496,733 + MPMX19_05015 0.11 -2.1
496,733 + MPMX19_05015 0.11 -1.2
496,793 + MPMX19_05015 0.22 +0.6
496,793 + MPMX19_05015 0.22 -0.2
496,793 + MPMX19_05015 0.22 -0.0
496,794 - MPMX19_05015 0.22 -0.5
496,794 - MPMX19_05015 0.22 +0.7
496,794 - MPMX19_05015 0.22 -0.8
496,794 - MPMX19_05015 0.22 -1.2
496,817 + MPMX19_05015 0.26 -1.5
496,817 + MPMX19_05015 0.26 +0.7
496,817 + MPMX19_05015 0.26 +0.2
496,817 + MPMX19_05015 0.26 -0.1
496,817 + MPMX19_05015 0.26 +1.4
496,818 - MPMX19_05015 0.26 +0.2
496,818 - MPMX19_05015 0.26 -0.6
496,818 - MPMX19_05015 0.26 +0.9
496,818 - MPMX19_05015 0.26 +0.7
496,818 - MPMX19_05015 0.26 +0.3
496,818 - MPMX19_05015 0.26 -0.2
496,818 - MPMX19_05015 0.26 +0.8
496,818 - MPMX19_05015 0.26 +0.2
497,006 + MPMX19_05015 0.60 -0.2
497,006 + MPMX19_05015 0.60 -2.2
497,006 + MPMX19_05015 0.60 +0.0
497,006 + MPMX19_05015 0.60 -0.8
497,007 - MPMX19_05015 0.61 -0.0
497,007 - MPMX19_05015 0.61 -0.9
497,007 - MPMX19_05015 0.61 +0.1
497,099 + MPMX19_05015 0.77 -0.1
497,100 - MPMX19_05015 0.77 +1.1
497,100 - MPMX19_05015 0.77 -0.2
497,328 + +1.8
497,328 + -0.1
497,328 + -0.5
497,328 + -0.7
497,328 + -0.2
497,328 + +0.9
497,328 + -0.1
497,329 - -1.2
497,329 - -0.8
497,329 - -0.2
497,329 - -0.2
497,329 - -0.6

Or see this region's nucleotide sequence