Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04994

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04992 and MPMX19_04993 are separated by 137 nucleotidesMPMX19_04993 and MPMX19_04994 are separated by 25 nucleotidesMPMX19_04994 and MPMX19_04995 overlap by 4 nucleotidesMPMX19_04995 and MPMX19_04996 are separated by 25 nucleotides MPMX19_04992: MPMX19_04992 - Chaperone protein ClpB, at 470,830 to 473,514 _04992 MPMX19_04993: MPMX19_04993 - Gluconate 5-dehydrogenase, at 473,652 to 474,446 _04993 MPMX19_04994: MPMX19_04994 - Aminodeoxychorismate synthase component 1, at 474,472 to 475,839 _04994 MPMX19_04995: MPMX19_04995 - D-alanine aminotransferase, at 475,836 to 476,642 _04995 MPMX19_04996: MPMX19_04996 - hypothetical protein, at 476,668 to 477,111 _04996 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.611 kb on + strandat 473.611 kb on + strandat 473.612 kb on - strandat 473.612 kb on - strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.682 kb on + strandat 473.683 kb on - strandat 473.683 kb on - strandat 473.683 kb on - strandat 473.683 kb on - strandat 473.683 kb on - strandat 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.153 kb on + strand, within MPMX19_04993at 474.154 kb on - strand, within MPMX19_04993at 474.154 kb on - strand, within MPMX19_04993at 474.154 kb on - strand, within MPMX19_04993at 474.207 kb on + strand, within MPMX19_04993at 474.208 kb on - strand, within MPMX19_04993at 474.303 kb on + strand, within MPMX19_04993at 474.303 kb on + strand, within MPMX19_04993at 474.303 kb on + strand, within MPMX19_04993at 474.303 kb on + strand, within MPMX19_04993at 474.303 kb on + strand, within MPMX19_04993at 474.303 kb on + strand, within MPMX19_04993at 474.304 kb on - strand, within MPMX19_04993at 474.304 kb on - strand, within MPMX19_04993at 474.304 kb on - strand, within MPMX19_04993at 474.304 kb on - strand, within MPMX19_04993at 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.393 kb on + strandat 474.394 kb on - strandat 474.394 kb on - strandat 474.394 kb on - strandat 474.394 kb on - strandat 474.394 kb on - strandat 474.394 kb on - strandat 474.394 kb on - strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.444 kb on + strandat 474.445 kb on - strandat 474.445 kb on - strandat 474.445 kb on - strandat 474.587 kb on - strandat 474.592 kb on + strandat 474.592 kb on + strandat 474.592 kb on + strandat 474.592 kb on + strandat 474.592 kb on + strandat 474.592 kb on + strandat 474.593 kb on - strandat 474.593 kb on - strandat 474.593 kb on - strandat 474.593 kb on - strandat 474.593 kb on - strandat 474.766 kb on + strand, within MPMX19_04994at 474.847 kb on + strand, within MPMX19_04994at 474.847 kb on + strand, within MPMX19_04994at 474.847 kb on + strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.054 kb on - strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.138 kb on + strand, within MPMX19_04994at 475.139 kb on - strand, within MPMX19_04994at 475.139 kb on - strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.625 kb on - strand, within MPMX19_04994at 475.625 kb on - strand, within MPMX19_04994at 476.025 kb on + strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.658 kb on - strandat 476.800 kb on + strand, within MPMX19_04996at 476.800 kb on + strand, within MPMX19_04996at 476.801 kb on - strand, within MPMX19_04996

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
473,611 + +2.7
473,611 + -0.1
473,612 - -0.7
473,612 - -0.8
473,682 + +0.3
473,682 + +2.1
473,682 + +0.3
473,682 + -1.0
473,682 + +0.3
473,682 + -0.7
473,682 + +1.2
473,682 + -0.2
473,683 - -0.7
473,683 - -0.4
473,683 - -0.1
473,683 - -2.4
473,683 - +0.4
474,153 + MPMX19_04993 0.63 +1.8
474,153 + MPMX19_04993 0.63 -1.2
474,153 + MPMX19_04993 0.63 -0.5
474,153 + MPMX19_04993 0.63 -1.1
474,153 + MPMX19_04993 0.63 +1.3
474,153 + MPMX19_04993 0.63 +1.6
474,153 + MPMX19_04993 0.63 -0.7
474,153 + MPMX19_04993 0.63 +0.9
474,153 + MPMX19_04993 0.63 -0.8
474,153 + MPMX19_04993 0.63 -0.8
474,153 + MPMX19_04993 0.63 -0.3
474,153 + MPMX19_04993 0.63 -1.9
474,154 - MPMX19_04993 0.63 -0.2
474,154 - MPMX19_04993 0.63 -0.1
474,154 - MPMX19_04993 0.63 -1.3
474,207 + MPMX19_04993 0.70 -0.7
474,208 - MPMX19_04993 0.70 -1.1
474,303 + MPMX19_04993 0.82 +1.1
474,303 + MPMX19_04993 0.82 -0.7
474,303 + MPMX19_04993 0.82 -0.5
474,303 + MPMX19_04993 0.82 -0.4
474,303 + MPMX19_04993 0.82 +1.0
474,303 + MPMX19_04993 0.82 -0.2
474,304 - MPMX19_04993 0.82 -0.2
474,304 - MPMX19_04993 0.82 -1.8
474,304 - MPMX19_04993 0.82 -0.3
474,304 - MPMX19_04993 0.82 -0.8
474,393 + +0.1
474,393 + +0.5
474,393 + +0.1
474,393 + +0.5
474,393 + -0.8
474,393 + -1.5
474,393 + -0.7
474,393 + +0.3
474,393 + -1.6
474,394 - -0.0
474,394 - -0.7
474,394 - -1.3
474,394 - -1.1
474,394 - -0.0
474,394 - -0.2
474,394 - +1.8
474,444 + -0.2
474,444 + +0.3
474,444 + -2.1
474,444 + -0.7
474,444 + -0.2
474,444 + -1.5
474,444 + -2.2
474,444 + -0.9
474,445 - +0.3
474,445 - -0.9
474,445 - -0.8
474,587 - -1.6
474,592 + +0.1
474,592 + -0.9
474,592 + +0.1
474,592 + -0.8
474,592 + +0.2
474,592 + -0.2
474,593 - -1.8
474,593 - -0.2
474,593 - -1.1
474,593 - -0.1
474,593 - +2.1
474,766 + MPMX19_04994 0.21 -0.9
474,847 + MPMX19_04994 0.27 +1.3
474,847 + MPMX19_04994 0.27 -1.2
474,847 + MPMX19_04994 0.27 -0.7
474,848 - MPMX19_04994 0.27 -1.8
474,848 - MPMX19_04994 0.27 -1.2
474,848 - MPMX19_04994 0.27 -0.8
474,848 - MPMX19_04994 0.27 -0.3
474,848 - MPMX19_04994 0.27 -1.0
475,022 - MPMX19_04994 0.40 -0.7
475,022 - MPMX19_04994 0.40 -0.3
475,022 - MPMX19_04994 0.40 +0.2
475,022 - MPMX19_04994 0.40 -0.6
475,051 + MPMX19_04994 0.42 -0.7
475,051 + MPMX19_04994 0.42 -1.1
475,051 + MPMX19_04994 0.42 -2.7
475,051 + MPMX19_04994 0.42 +1.0
475,051 + MPMX19_04994 0.42 -0.2
475,051 + MPMX19_04994 0.42 -1.2
475,051 + MPMX19_04994 0.42 +1.3
475,051 + MPMX19_04994 0.42 -1.2
475,051 + MPMX19_04994 0.42 +0.2
475,051 + MPMX19_04994 0.42 -0.9
475,051 + MPMX19_04994 0.42 +0.5
475,051 + MPMX19_04994 0.42 -0.9
475,051 + MPMX19_04994 0.42 -0.4
475,051 + MPMX19_04994 0.42 -0.4
475,051 + MPMX19_04994 0.42 -1.8
475,051 + MPMX19_04994 0.42 -0.4
475,051 + MPMX19_04994 0.42 -0.2
475,051 + MPMX19_04994 0.42 +1.4
475,051 + MPMX19_04994 0.42 -0.0
475,051 + MPMX19_04994 0.42 -0.5
475,051 + MPMX19_04994 0.42 +1.7
475,051 + MPMX19_04994 0.42 -1.0
475,052 - MPMX19_04994 0.42 +0.3
475,052 - MPMX19_04994 0.42 -0.4
475,052 - MPMX19_04994 0.42 +0.7
475,052 - MPMX19_04994 0.42 +1.3
475,052 - MPMX19_04994 0.42 +0.3
475,052 - MPMX19_04994 0.42 +0.8
475,052 - MPMX19_04994 0.42 -1.0
475,053 + MPMX19_04994 0.42 -1.2
475,053 + MPMX19_04994 0.42 +0.2
475,053 + MPMX19_04994 0.42 +0.9
475,053 + MPMX19_04994 0.42 +0.5
475,054 - MPMX19_04994 0.43 -0.1
475,072 + MPMX19_04994 0.44 -1.1
475,072 + MPMX19_04994 0.44 -0.2
475,072 + MPMX19_04994 0.44 +0.7
475,072 + MPMX19_04994 0.44 -0.5
475,072 + MPMX19_04994 0.44 -0.8
475,072 + MPMX19_04994 0.44 -1.1
475,072 + MPMX19_04994 0.44 +0.4
475,072 + MPMX19_04994 0.44 -0.4
475,072 + MPMX19_04994 0.44 +0.2
475,072 + MPMX19_04994 0.44 +0.9
475,072 + MPMX19_04994 0.44 -0.3
475,072 + MPMX19_04994 0.44 -0.1
475,072 + MPMX19_04994 0.44 +0.6
475,072 + MPMX19_04994 0.44 -2.4
475,072 + MPMX19_04994 0.44 +0.1
475,072 + MPMX19_04994 0.44 +0.8
475,072 + MPMX19_04994 0.44 +0.6
475,072 + MPMX19_04994 0.44 +0.6
475,072 + MPMX19_04994 0.44 -0.7
475,073 - MPMX19_04994 0.44 -1.2
475,073 - MPMX19_04994 0.44 -0.1
475,073 - MPMX19_04994 0.44 +0.8
475,073 - MPMX19_04994 0.44 -0.9
475,073 - MPMX19_04994 0.44 -1.4
475,129 + MPMX19_04994 0.48 +0.2
475,129 + MPMX19_04994 0.48 -1.4
475,129 + MPMX19_04994 0.48 -0.2
475,129 + MPMX19_04994 0.48 -2.2
475,129 + MPMX19_04994 0.48 -0.4
475,129 + MPMX19_04994 0.48 -1.3
475,129 + MPMX19_04994 0.48 +0.9
475,129 + MPMX19_04994 0.48 +1.1
475,129 + MPMX19_04994 0.48 -0.9
475,129 + MPMX19_04994 0.48 -1.4
475,129 + MPMX19_04994 0.48 +0.1
475,129 + MPMX19_04994 0.48 -0.1
475,129 + MPMX19_04994 0.48 -0.2
475,129 + MPMX19_04994 0.48 +0.1
475,130 - MPMX19_04994 0.48 +2.1
475,130 - MPMX19_04994 0.48 -1.9
475,130 - MPMX19_04994 0.48 -0.2
475,130 - MPMX19_04994 0.48 -0.2
475,130 - MPMX19_04994 0.48 +0.2
475,130 - MPMX19_04994 0.48 -0.9
475,130 - MPMX19_04994 0.48 -0.5
475,130 - MPMX19_04994 0.48 -1.4
475,138 + MPMX19_04994 0.49 -0.5
475,139 - MPMX19_04994 0.49 +0.3
475,139 - MPMX19_04994 0.49 -2.6
475,624 + MPMX19_04994 0.84 +0.4
475,624 + MPMX19_04994 0.84 -0.6
475,624 + MPMX19_04994 0.84 -1.0
475,624 + MPMX19_04994 0.84 +0.5
475,625 - MPMX19_04994 0.84 -0.2
475,625 - MPMX19_04994 0.84 +0.2
476,025 + MPMX19_04995 0.23 +0.3
476,026 - MPMX19_04995 0.24 +0.0
476,026 - MPMX19_04995 0.24 -0.4
476,026 - MPMX19_04995 0.24 +0.3
476,026 - MPMX19_04995 0.24 -0.5
476,026 - MPMX19_04995 0.24 -1.2
476,026 - MPMX19_04995 0.24 +1.3
476,026 - MPMX19_04995 0.24 -0.7
476,277 + MPMX19_04995 0.55 -0.4
476,277 + MPMX19_04995 0.55 -0.5
476,277 + MPMX19_04995 0.55 -0.3
476,278 - MPMX19_04995 0.55 -1.0
476,278 - MPMX19_04995 0.55 +1.4
476,278 - MPMX19_04995 0.55 -1.8
476,278 - MPMX19_04995 0.55 -0.9
476,640 + +0.5
476,640 + -1.6
476,640 + +1.1
476,640 + +0.3
476,640 + -0.2
476,640 + +1.1
476,641 - -2.4
476,641 - +0.3
476,641 - -0.9
476,641 - -1.1
476,641 - -0.7
476,658 - +0.3
476,800 + MPMX19_04996 0.30 +0.3
476,800 + MPMX19_04996 0.30 -1.1
476,801 - MPMX19_04996 0.30 -0.1

Or see this region's nucleotide sequence