Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04967 and MPMX19_04968 are separated by 88 nucleotides MPMX19_04968 and MPMX19_04969 are separated by 64 nucleotides MPMX19_04969 and MPMX19_04970 are separated by 394 nucleotides
MPMX19_04967: MPMX19_04967 - ADP-heptose--LPS heptosyltransferase 2, at 432,489 to 433,499
_04967
MPMX19_04968: MPMX19_04968 - hypothetical protein, at 433,588 to 434,139
_04968
MPMX19_04969: MPMX19_04969 - Glutamine-dependent NAD(+) synthetase, at 434,204 to 436,249
_04969
MPMX19_04970: MPMX19_04970 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 436,644 to 439,628
_04970
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.436 kb on + strand at 433.483 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.606 kb on + strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.607 kb on - strand at 433.677 kb on + strand, within MPMX19_04968 at 433.678 kb on - strand, within MPMX19_04968 at 433.678 kb on - strand, within MPMX19_04968 at 433.714 kb on + strand, within MPMX19_04968 at 433.714 kb on + strand, within MPMX19_04968 at 433.715 kb on - strand, within MPMX19_04968 at 434.409 kb on + strand, within MPMX19_04969 at 434.409 kb on + strand, within MPMX19_04969 at 434.409 kb on + strand, within MPMX19_04969 at 434.410 kb on - strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.526 kb on + strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.527 kb on - strand, within MPMX19_04969 at 434.536 kb on + strand, within MPMX19_04969 at 434.537 kb on - strand, within MPMX19_04969 at 434.537 kb on - strand, within MPMX19_04969 at 434.657 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.742 kb on + strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.743 kb on - strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.769 kb on + strand, within MPMX19_04969 at 434.770 kb on - strand, within MPMX19_04969 at 434.770 kb on - strand, within MPMX19_04969 at 434.770 kb on - strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.853 kb on + strand, within MPMX19_04969 at 434.854 kb on - strand, within MPMX19_04969 at 434.854 kb on - strand, within MPMX19_04969 at 434.897 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.898 kb on + strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.899 kb on - strand, within MPMX19_04969 at 434.900 kb on + strand, within MPMX19_04969 at 434.900 kb on + strand, within MPMX19_04969 at 434.901 kb on - strand, within MPMX19_04969 at 434.901 kb on - strand, within MPMX19_04969 at 434.919 kb on + strand, within MPMX19_04969 at 434.920 kb on - strand, within MPMX19_04969 at 434.920 kb on - strand, within MPMX19_04969 at 434.920 kb on - strand, within MPMX19_04969 at 435.097 kb on + strand, within MPMX19_04969 at 435.098 kb on - strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.216 kb on + strand, within MPMX19_04969 at 435.217 kb on - strand, within MPMX19_04969 at 435.217 kb on - strand, within MPMX19_04969 at 435.217 kb on - strand, within MPMX19_04969 at 435.225 kb on + strand, within MPMX19_04969 at 435.226 kb on - strand, within MPMX19_04969 at 435.226 kb on - strand, within MPMX19_04969 at 435.226 kb on - strand, within MPMX19_04969 at 435.226 kb on - strand, within MPMX19_04969 at 435.226 kb on - strand, within MPMX19_04969 at 435.226 kb on - strand, within MPMX19_04969 at 435.558 kb on + strand, within MPMX19_04969 at 435.558 kb on + strand, within MPMX19_04969 at 435.559 kb on - strand, within MPMX19_04969 at 435.559 kb on - strand, within MPMX19_04969 at 435.559 kb on - strand, within MPMX19_04969 at 435.564 kb on + strand, within MPMX19_04969 at 435.565 kb on - strand, within MPMX19_04969 at 435.565 kb on - strand, within MPMX19_04969 at 435.565 kb on - strand, within MPMX19_04969 at 435.858 kb on + strand, within MPMX19_04969 at 435.858 kb on + strand, within MPMX19_04969 at 435.858 kb on + strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.859 kb on - strand, within MPMX19_04969 at 435.870 kb on + strand, within MPMX19_04969 at 435.870 kb on + strand, within MPMX19_04969 at 435.870 kb on + strand, within MPMX19_04969 at 435.871 kb on - strand, within MPMX19_04969 at 435.871 kb on - strand, within MPMX19_04969 at 435.939 kb on + strand, within MPMX19_04969 at 435.939 kb on + strand, within MPMX19_04969 at 435.939 kb on + strand, within MPMX19_04969 at 435.939 kb on + strand, within MPMX19_04969 at 435.939 kb on + strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.940 kb on - strand, within MPMX19_04969 at 435.954 kb on + strand, within MPMX19_04969 at 435.954 kb on + strand, within MPMX19_04969 at 435.954 kb on + strand, within MPMX19_04969 at 435.954 kb on + strand, within MPMX19_04969 at 435.954 kb on + strand, within MPMX19_04969 at 435.955 kb on - strand, within MPMX19_04969 at 435.955 kb on - strand, within MPMX19_04969 at 435.955 kb on - strand, within MPMX19_04969 at 436.044 kb on - strand, within MPMX19_04969 at 436.231 kb on - strand at 436.231 kb on - strand at 436.315 kb on + strand at 436.315 kb on + strand at 436.315 kb on + strand at 436.315 kb on + strand at 436.315 kb on + strand at 436.315 kb on + strand at 436.315 kb on + strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.316 kb on - strand at 436.435 kb on + strand at 436.479 kb on - strand at 436.544 kb on - strand at 436.544 kb on - strand at 436.544 kb on - strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.545 kb on + strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.546 kb on - strand at 436.602 kb on - strand at 436.619 kb on + strand at 436.619 kb on + strand at 436.620 kb on - strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.806 kb on + strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.929 kb on + strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand at 436.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 433,436 + -1.2 433,483 + +1.1 433,606 + +0.4 433,606 + -1.1 433,606 + +0.3 433,606 + -1.1 433,606 + -2.2 433,606 + +0.2 433,606 + -0.9 433,607 - -0.9 433,607 - -1.4 433,607 - -1.0 433,607 - -1.4 433,607 - -1.8 433,607 - -0.3 433,607 - -1.4 433,607 - -1.6 433,677 + MPMX19_04968 0.16 -1.3 433,678 - MPMX19_04968 0.16 -2.6 433,678 - MPMX19_04968 0.16 -1.2 433,714 + MPMX19_04968 0.23 -0.2 433,714 + MPMX19_04968 0.23 +0.3 433,715 - MPMX19_04968 0.23 -2.0 434,409 + MPMX19_04969 0.10 -1.5 434,409 + MPMX19_04969 0.10 -0.4 434,409 + MPMX19_04969 0.10 -1.6 434,410 - MPMX19_04969 0.10 -0.9 434,526 + MPMX19_04969 0.16 +1.1 434,526 + MPMX19_04969 0.16 +0.1 434,526 + MPMX19_04969 0.16 +0.3 434,526 + MPMX19_04969 0.16 -1.3 434,526 + MPMX19_04969 0.16 -1.7 434,527 - MPMX19_04969 0.16 -1.5 434,527 - MPMX19_04969 0.16 -1.2 434,527 - MPMX19_04969 0.16 -0.7 434,527 - MPMX19_04969 0.16 -1.2 434,527 - MPMX19_04969 0.16 -0.4 434,527 - MPMX19_04969 0.16 -2.6 434,527 - MPMX19_04969 0.16 -1.0 434,527 - MPMX19_04969 0.16 +0.1 434,536 + MPMX19_04969 0.16 -0.5 434,537 - MPMX19_04969 0.16 -1.2 434,537 - MPMX19_04969 0.16 -0.7 434,657 + MPMX19_04969 0.22 -0.6 434,742 + MPMX19_04969 0.26 +0.8 434,742 + MPMX19_04969 0.26 -1.9 434,742 + MPMX19_04969 0.26 -1.6 434,742 + MPMX19_04969 0.26 -0.9 434,742 + MPMX19_04969 0.26 +0.4 434,742 + MPMX19_04969 0.26 +0.4 434,743 - MPMX19_04969 0.26 +1.1 434,743 - MPMX19_04969 0.26 -1.4 434,743 - MPMX19_04969 0.26 +1.2 434,743 - MPMX19_04969 0.26 -0.8 434,743 - MPMX19_04969 0.26 -0.9 434,743 - MPMX19_04969 0.26 -1.5 434,743 - MPMX19_04969 0.26 -1.6 434,743 - MPMX19_04969 0.26 -1.5 434,743 - MPMX19_04969 0.26 +0.7 434,769 + MPMX19_04969 0.28 +0.5 434,769 + MPMX19_04969 0.28 -0.9 434,769 + MPMX19_04969 0.28 -0.5 434,769 + MPMX19_04969 0.28 -1.2 434,769 + MPMX19_04969 0.28 +0.3 434,769 + MPMX19_04969 0.28 +0.1 434,769 + MPMX19_04969 0.28 -1.6 434,769 + MPMX19_04969 0.28 -1.7 434,769 + MPMX19_04969 0.28 -1.1 434,770 - MPMX19_04969 0.28 -0.2 434,770 - MPMX19_04969 0.28 -0.4 434,770 - MPMX19_04969 0.28 -1.1 434,853 + MPMX19_04969 0.32 -0.5 434,853 + MPMX19_04969 0.32 -1.6 434,853 + MPMX19_04969 0.32 -1.2 434,853 + MPMX19_04969 0.32 -1.7 434,854 - MPMX19_04969 0.32 -1.4 434,854 - MPMX19_04969 0.32 -1.1 434,897 + MPMX19_04969 0.34 -0.5 434,898 + MPMX19_04969 0.34 +0.1 434,898 + MPMX19_04969 0.34 +0.1 434,898 + MPMX19_04969 0.34 -1.0 434,898 + MPMX19_04969 0.34 -1.6 434,898 + MPMX19_04969 0.34 -0.7 434,898 + MPMX19_04969 0.34 +0.0 434,898 + MPMX19_04969 0.34 -0.3 434,898 + MPMX19_04969 0.34 -0.9 434,898 + MPMX19_04969 0.34 -1.0 434,898 + MPMX19_04969 0.34 -1.7 434,898 + MPMX19_04969 0.34 +0.5 434,898 + MPMX19_04969 0.34 -0.9 434,898 + MPMX19_04969 0.34 -0.5 434,899 - MPMX19_04969 0.34 -1.0 434,899 - MPMX19_04969 0.34 -0.1 434,899 - MPMX19_04969 0.34 -1.2 434,899 - MPMX19_04969 0.34 +0.9 434,899 - MPMX19_04969 0.34 -1.1 434,899 - MPMX19_04969 0.34 +0.3 434,899 - MPMX19_04969 0.34 -1.8 434,899 - MPMX19_04969 0.34 -0.4 434,899 - MPMX19_04969 0.34 -0.9 434,899 - MPMX19_04969 0.34 -2.0 434,899 - MPMX19_04969 0.34 -1.2 434,900 + MPMX19_04969 0.34 +0.1 434,900 + MPMX19_04969 0.34 -0.6 434,901 - MPMX19_04969 0.34 -0.3 434,901 - MPMX19_04969 0.34 +0.9 434,919 + MPMX19_04969 0.35 -0.3 434,920 - MPMX19_04969 0.35 -0.9 434,920 - MPMX19_04969 0.35 -1.3 434,920 - MPMX19_04969 0.35 -1.2 435,097 + MPMX19_04969 0.44 +0.7 435,098 - MPMX19_04969 0.44 -0.5 435,216 + MPMX19_04969 0.49 -1.7 435,216 + MPMX19_04969 0.49 +0.8 435,216 + MPMX19_04969 0.49 -0.2 435,216 + MPMX19_04969 0.49 -1.5 435,216 + MPMX19_04969 0.49 -0.4 435,216 + MPMX19_04969 0.49 +0.2 435,216 + MPMX19_04969 0.49 -0.4 435,216 + MPMX19_04969 0.49 -2.4 435,216 + MPMX19_04969 0.49 -0.3 435,216 + MPMX19_04969 0.49 -1.8 435,217 - MPMX19_04969 0.50 +0.1 435,217 - MPMX19_04969 0.50 -0.1 435,217 - MPMX19_04969 0.50 -0.9 435,225 + MPMX19_04969 0.50 +0.5 435,226 - MPMX19_04969 0.50 -0.9 435,226 - MPMX19_04969 0.50 -1.9 435,226 - MPMX19_04969 0.50 +1.1 435,226 - MPMX19_04969 0.50 -2.4 435,226 - MPMX19_04969 0.50 +1.5 435,226 - MPMX19_04969 0.50 -0.2 435,558 + MPMX19_04969 0.66 -1.5 435,558 + MPMX19_04969 0.66 -0.7 435,559 - MPMX19_04969 0.66 +1.1 435,559 - MPMX19_04969 0.66 -0.4 435,559 - MPMX19_04969 0.66 -0.2 435,564 + MPMX19_04969 0.66 -1.3 435,565 - MPMX19_04969 0.67 -1.0 435,565 - MPMX19_04969 0.67 -0.5 435,565 - MPMX19_04969 0.67 -2.1 435,858 + MPMX19_04969 0.81 -1.0 435,858 + MPMX19_04969 0.81 +0.1 435,858 + MPMX19_04969 0.81 -2.2 435,859 - MPMX19_04969 0.81 -1.5 435,859 - MPMX19_04969 0.81 +0.0 435,859 - MPMX19_04969 0.81 -1.2 435,859 - MPMX19_04969 0.81 -1.7 435,859 - MPMX19_04969 0.81 +0.8 435,859 - MPMX19_04969 0.81 +0.1 435,859 - MPMX19_04969 0.81 +0.3 435,870 + MPMX19_04969 0.81 -2.0 435,870 + MPMX19_04969 0.81 -2.2 435,870 + MPMX19_04969 0.81 -1.6 435,871 - MPMX19_04969 0.81 +1.7 435,871 - MPMX19_04969 0.81 +0.5 435,939 + MPMX19_04969 0.85 +0.8 435,939 + MPMX19_04969 0.85 +0.8 435,939 + MPMX19_04969 0.85 +0.0 435,939 + MPMX19_04969 0.85 +0.3 435,939 + MPMX19_04969 0.85 +0.8 435,940 - MPMX19_04969 0.85 -0.0 435,940 - MPMX19_04969 0.85 -0.9 435,940 - MPMX19_04969 0.85 -0.4 435,940 - MPMX19_04969 0.85 -0.4 435,940 - MPMX19_04969 0.85 -1.6 435,940 - MPMX19_04969 0.85 +0.1 435,940 - MPMX19_04969 0.85 -0.5 435,940 - MPMX19_04969 0.85 -0.0 435,954 + MPMX19_04969 0.86 -0.2 435,954 + MPMX19_04969 0.86 +0.1 435,954 + MPMX19_04969 0.86 +0.1 435,954 + MPMX19_04969 0.86 -1.6 435,954 + MPMX19_04969 0.86 -2.0 435,955 - MPMX19_04969 0.86 -0.1 435,955 - MPMX19_04969 0.86 -2.4 435,955 - MPMX19_04969 0.86 -2.9 436,044 - MPMX19_04969 0.90 -0.2 436,231 - +0.1 436,231 - -1.5 436,315 + +0.2 436,315 + +1.1 436,315 + -0.7 436,315 + -0.3 436,315 + +1.3 436,315 + -0.2 436,315 + -2.1 436,316 - +0.8 436,316 - -2.4 436,316 - +0.2 436,316 - -0.2 436,316 - -1.2 436,316 - -0.6 436,316 - -1.3 436,316 - -1.0 436,316 - -2.6 436,316 - +0.5 436,435 + -1.7 436,479 - -0.9 436,544 - -0.1 436,544 - -0.2 436,544 - -0.9 436,545 + -0.2 436,545 + -1.4 436,545 + -2.2 436,545 + -1.1 436,545 + -1.1 436,545 + -1.4 436,545 + -1.0 436,545 + +0.4 436,546 - -0.0 436,546 - -1.5 436,546 - -0.7 436,546 - -0.5 436,546 - -0.3 436,546 - -0.1 436,546 - +0.2 436,546 - -0.8 436,602 - -3.1 436,619 + -0.1 436,619 + -0.1 436,620 - -0.8 436,806 + -2.0 436,806 + -1.3 436,806 + -0.2 436,806 + -1.1 436,806 + -1.5 436,806 + -0.7 436,806 + -0.2 436,806 + +0.2 436,806 + -0.7 436,807 - +0.1 436,807 - +1.1 436,807 - -0.8 436,807 - -0.5 436,807 - +0.2 436,807 - -0.8 436,929 + +0.5 436,929 + +0.3 436,929 + -0.5 436,929 + +1.5 436,929 + +0.1 436,929 + -0.5 436,929 + -0.5 436,929 + -0.0 436,929 + +0.5 436,930 - +0.3 436,930 - -0.4 436,930 - -0.5 436,930 - -0.5 436,930 - +0.1 436,930 - -0.7 436,930 - +0.1 436,930 - +0.5 436,930 - +0.8 436,930 - -0.7
Or see this region's nucleotide sequence