Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04965 and MPMX19_04966 are separated by 183 nucleotides MPMX19_04966 and MPMX19_04967 overlap by 4 nucleotides
MPMX19_04965: MPMX19_04965 - Lipopolysaccharide assembly protein B, at 429,004 to 431,145
_04965
MPMX19_04966: MPMX19_04966 - hypothetical protein, at 431,329 to 432,492
_04966
MPMX19_04967: MPMX19_04967 - ADP-heptose--LPS heptosyltransferase 2, at 432,489 to 433,499
_04967
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1 at 430.374 kb on - strand, within MPMX19_04965 at 430.679 kb on + strand, within MPMX19_04965 at 430.679 kb on + strand, within MPMX19_04965 at 430.679 kb on + strand, within MPMX19_04965 at 430.752 kb on - strand, within MPMX19_04965 at 430.838 kb on + strand, within MPMX19_04965 at 430.838 kb on + strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.839 kb on - strand, within MPMX19_04965 at 430.946 kb on + strand at 430.946 kb on + strand at 430.947 kb on - strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.087 kb on + strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.088 kb on - strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 431.307 kb on + strand at 433.436 kb on + strand at 433.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 430,374 - MPMX19_04965 0.64 -1.5 430,679 + MPMX19_04965 0.78 -1.2 430,679 + MPMX19_04965 0.78 -2.1 430,679 + MPMX19_04965 0.78 +1.0 430,752 - MPMX19_04965 0.82 -0.5 430,838 + MPMX19_04965 0.86 +0.2 430,838 + MPMX19_04965 0.86 +0.8 430,839 - MPMX19_04965 0.86 -0.2 430,839 - MPMX19_04965 0.86 -0.2 430,839 - MPMX19_04965 0.86 -0.9 430,839 - MPMX19_04965 0.86 -1.1 430,946 + +0.3 430,946 + -2.1 430,947 - +1.1 431,087 + -0.5 431,087 + -0.6 431,087 + -0.2 431,087 + -1.4 431,087 + -0.7 431,087 + -0.6 431,087 + -0.6 431,087 + +0.2 431,088 - -0.2 431,088 - -1.2 431,088 - -0.2 431,088 - -1.8 431,088 - +1.4 431,088 - -1.1 431,088 - -0.2 431,088 - +0.3 431,307 + -2.0 431,307 + -0.2 431,307 + +0.9 431,307 + -0.9 431,307 + -1.4 431,307 + -0.2 431,307 + +0.1 431,307 + -1.1 431,307 + -0.6 433,436 + -1.2 433,483 + +1.1
Or see this region's nucleotide sequence