Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04962

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04961 and MPMX19_04962 are separated by 64 nucleotidesMPMX19_04962 and MPMX19_04963 are separated by 87 nucleotides MPMX19_04961: MPMX19_04961 - hypothetical protein, at 424,769 to 425,533 _04961 MPMX19_04962: MPMX19_04962 - hypothetical protein, at 425,598 to 426,269 _04962 MPMX19_04963: MPMX19_04963 - Cysteine desulfurase IscS, at 426,357 to 427,499 _04963 Position (kb) 425 426 427Strain fitness (log2 ratio) -3 -2 -1 0 1at 424.608 kb on + strandat 424.608 kb on + strandat 424.706 kb on - strandat 424.706 kb on - strandat 424.792 kb on + strandat 424.792 kb on + strandat 424.792 kb on + strandat 424.792 kb on + strandat 424.792 kb on + strandat 424.792 kb on + strandat 424.792 kb on + strandat 424.793 kb on - strandat 424.815 kb on + strandat 424.845 kb on + strandat 424.845 kb on + strandat 424.846 kb on - strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.009 kb on + strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.010 kb on - strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.012 kb on + strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.013 kb on - strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.051 kb on + strand, within MPMX19_04961at 425.052 kb on - strand, within MPMX19_04961at 425.052 kb on - strand, within MPMX19_04961at 425.052 kb on - strand, within MPMX19_04961at 425.052 kb on - strand, within MPMX19_04961at 425.052 kb on - strand, within MPMX19_04961at 425.337 kb on - strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.411 kb on + strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.412 kb on - strand, within MPMX19_04961at 425.429 kb on + strand, within MPMX19_04961at 425.430 kb on - strand, within MPMX19_04961at 425.430 kb on - strand, within MPMX19_04961at 425.430 kb on - strand, within MPMX19_04961at 425.617 kb on + strandat 425.617 kb on + strandat 425.617 kb on + strandat 425.617 kb on + strandat 425.617 kb on + strandat 425.617 kb on + strandat 425.618 kb on - strandat 425.618 kb on - strandat 425.618 kb on - strandat 425.618 kb on - strandat 426.049 kb on + strand, within MPMX19_04962at 426.050 kb on - strand, within MPMX19_04962at 426.050 kb on - strand, within MPMX19_04962at 426.898 kb on + strand, within MPMX19_04963at 426.899 kb on - strand, within MPMX19_04963at 426.899 kb on - strand, within MPMX19_04963at 426.899 kb on - strand, within MPMX19_04963at 426.899 kb on - strand, within MPMX19_04963

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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424,608 + +1.5
424,608 + -1.2
424,706 - +0.4
424,706 - -1.5
424,792 + -0.6
424,792 + -0.3
424,792 + +0.1
424,792 + -0.5
424,792 + -0.7
424,792 + -3.3
424,792 + -0.4
424,793 - -1.1
424,815 + -2.4
424,845 + -0.7
424,845 + +0.0
424,846 - MPMX19_04961 0.10 +0.8
425,009 + MPMX19_04961 0.31 -0.4
425,009 + MPMX19_04961 0.31 -2.0
425,009 + MPMX19_04961 0.31 -0.4
425,009 + MPMX19_04961 0.31 -0.7
425,009 + MPMX19_04961 0.31 -0.1
425,009 + MPMX19_04961 0.31 -1.8
425,009 + MPMX19_04961 0.31 -0.4
425,009 + MPMX19_04961 0.31 -0.9
425,009 + MPMX19_04961 0.31 +0.3
425,009 + MPMX19_04961 0.31 +0.4
425,010 - MPMX19_04961 0.32 +0.5
425,010 - MPMX19_04961 0.32 +0.1
425,010 - MPMX19_04961 0.32 -1.7
425,010 - MPMX19_04961 0.32 +0.2
425,010 - MPMX19_04961 0.32 -0.7
425,010 - MPMX19_04961 0.32 -2.5
425,010 - MPMX19_04961 0.32 -1.1
425,010 - MPMX19_04961 0.32 -2.4
425,010 - MPMX19_04961 0.32 -0.2
425,010 - MPMX19_04961 0.32 -0.5
425,010 - MPMX19_04961 0.32 +0.3
425,010 - MPMX19_04961 0.32 -0.7
425,012 + MPMX19_04961 0.32 -0.2
425,012 + MPMX19_04961 0.32 -2.7
425,012 + MPMX19_04961 0.32 -0.0
425,012 + MPMX19_04961 0.32 -1.1
425,012 + MPMX19_04961 0.32 -0.4
425,012 + MPMX19_04961 0.32 -0.6
425,012 + MPMX19_04961 0.32 +0.2
425,012 + MPMX19_04961 0.32 -0.3
425,012 + MPMX19_04961 0.32 -0.7
425,013 - MPMX19_04961 0.32 -0.2
425,013 - MPMX19_04961 0.32 +0.7
425,013 - MPMX19_04961 0.32 -1.4
425,013 - MPMX19_04961 0.32 -0.0
425,013 - MPMX19_04961 0.32 -0.2
425,013 - MPMX19_04961 0.32 +0.3
425,013 - MPMX19_04961 0.32 -0.5
425,013 - MPMX19_04961 0.32 -0.7
425,013 - MPMX19_04961 0.32 -0.6
425,013 - MPMX19_04961 0.32 -2.3
425,051 + MPMX19_04961 0.37 -0.6
425,051 + MPMX19_04961 0.37 -0.5
425,051 + MPMX19_04961 0.37 -0.2
425,051 + MPMX19_04961 0.37 -0.9
425,051 + MPMX19_04961 0.37 +0.5
425,051 + MPMX19_04961 0.37 -0.4
425,051 + MPMX19_04961 0.37 -0.8
425,052 - MPMX19_04961 0.37 +0.5
425,052 - MPMX19_04961 0.37 -2.0
425,052 - MPMX19_04961 0.37 -1.1
425,052 - MPMX19_04961 0.37 -0.4
425,052 - MPMX19_04961 0.37 +1.3
425,337 - MPMX19_04961 0.74 -0.2
425,411 + MPMX19_04961 0.84 -1.8
425,411 + MPMX19_04961 0.84 -0.6
425,411 + MPMX19_04961 0.84 -2.0
425,411 + MPMX19_04961 0.84 -1.2
425,411 + MPMX19_04961 0.84 -1.1
425,411 + MPMX19_04961 0.84 -1.8
425,411 + MPMX19_04961 0.84 -0.2
425,411 + MPMX19_04961 0.84 -1.1
425,412 - MPMX19_04961 0.84 -1.2
425,412 - MPMX19_04961 0.84 +0.8
425,412 - MPMX19_04961 0.84 -1.4
425,412 - MPMX19_04961 0.84 +0.9
425,412 - MPMX19_04961 0.84 +0.8
425,412 - MPMX19_04961 0.84 +0.1
425,412 - MPMX19_04961 0.84 -0.4
425,429 + MPMX19_04961 0.86 +0.3
425,430 - MPMX19_04961 0.86 -1.1
425,430 - MPMX19_04961 0.86 -0.9
425,430 - MPMX19_04961 0.86 -1.0
425,617 + -0.9
425,617 + -0.8
425,617 + -0.2
425,617 + -0.6
425,617 + -0.4
425,617 + -0.5
425,618 - +0.7
425,618 - -0.4
425,618 - -0.2
425,618 - -0.8
426,049 + MPMX19_04962 0.67 -1.2
426,050 - MPMX19_04962 0.67 -0.7
426,050 - MPMX19_04962 0.67 -1.1
426,898 + MPMX19_04963 0.47 -0.2
426,899 - MPMX19_04963 0.47 -1.1
426,899 - MPMX19_04963 0.47 -1.7
426,899 - MPMX19_04963 0.47 -1.9
426,899 - MPMX19_04963 0.47 -0.7

Or see this region's nucleotide sequence