Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04930

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04929 and MPMX19_04930 are separated by 109 nucleotidesMPMX19_04930 and MPMX19_04931 are separated by 121 nucleotides MPMX19_04929: MPMX19_04929 - Glycogen operon protein GlgX, at 388,457 to 390,808 _04929 MPMX19_04930: MPMX19_04930 - Hydrogen peroxide-inducible genes activator, at 390,918 to 391,889 _04930 MPMX19_04931: MPMX19_04931 - Catalase, at 392,011 to 393,462 _04931 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 389.976 kb on + strand, within MPMX19_04929at 389.976 kb on + strand, within MPMX19_04929at 389.976 kb on + strand, within MPMX19_04929at 389.976 kb on + strand, within MPMX19_04929at 389.977 kb on - strand, within MPMX19_04929at 389.977 kb on - strand, within MPMX19_04929at 389.977 kb on - strand, within MPMX19_04929at 389.977 kb on - strand, within MPMX19_04929at 390.066 kb on + strand, within MPMX19_04929at 390.067 kb on - strand, within MPMX19_04929at 390.102 kb on + strand, within MPMX19_04929at 390.102 kb on + strand, within MPMX19_04929at 390.102 kb on + strand, within MPMX19_04929at 390.102 kb on + strand, within MPMX19_04929at 390.103 kb on - strand, within MPMX19_04929at 390.103 kb on - strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.111 kb on + strand, within MPMX19_04929at 390.204 kb on + strand, within MPMX19_04929at 390.204 kb on + strand, within MPMX19_04929at 390.204 kb on + strand, within MPMX19_04929at 390.205 kb on - strand, within MPMX19_04929at 390.237 kb on + strand, within MPMX19_04929at 390.237 kb on + strand, within MPMX19_04929at 390.237 kb on + strand, within MPMX19_04929at 390.237 kb on + strand, within MPMX19_04929at 390.237 kb on + strand, within MPMX19_04929at 390.237 kb on + strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.238 kb on - strand, within MPMX19_04929at 390.303 kb on + strand, within MPMX19_04929at 390.303 kb on + strand, within MPMX19_04929at 390.304 kb on - strand, within MPMX19_04929at 390.304 kb on - strand, within MPMX19_04929at 390.444 kb on + strand, within MPMX19_04929at 390.444 kb on + strand, within MPMX19_04929at 390.444 kb on + strand, within MPMX19_04929at 390.445 kb on - strand, within MPMX19_04929at 390.445 kb on - strand, within MPMX19_04929at 390.495 kb on + strand, within MPMX19_04929at 390.495 kb on + strand, within MPMX19_04929at 390.495 kb on + strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.496 kb on - strand, within MPMX19_04929at 390.549 kb on + strand, within MPMX19_04929at 390.549 kb on + strand, within MPMX19_04929at 390.550 kb on - strand, within MPMX19_04929at 390.550 kb on - strand, within MPMX19_04929at 390.573 kb on + strandat 390.573 kb on + strandat 390.573 kb on + strandat 390.573 kb on + strandat 390.573 kb on + strandat 390.574 kb on - strandat 390.603 kb on + strandat 390.603 kb on + strandat 390.603 kb on + strandat 390.604 kb on - strandat 390.604 kb on - strandat 390.937 kb on - strandat 390.937 kb on - strandat 390.937 kb on - strandat 390.937 kb on - strandat 391.087 kb on + strand, within MPMX19_04930at 391.088 kb on - strand, within MPMX19_04930at 391.088 kb on - strand, within MPMX19_04930at 391.088 kb on - strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.157 kb on + strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.158 kb on - strand, within MPMX19_04930at 391.538 kb on + strand, within MPMX19_04930at 391.538 kb on + strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.539 kb on - strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.552 kb on + strand, within MPMX19_04930at 391.553 kb on - strand, within MPMX19_04930at 391.553 kb on - strand, within MPMX19_04930at 391.553 kb on - strand, within MPMX19_04930at 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.840 kb on + strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.841 kb on - strandat 391.889 kb on + strandat 391.889 kb on + strandat 391.889 kb on + strandat 391.890 kb on - strandat 391.919 kb on - strandat 391.919 kb on - strandat 391.919 kb on - strandat 391.929 kb on + strandat 391.930 kb on - strandat 391.930 kb on - strandat 391.931 kb on + strandat 391.931 kb on + strandat 391.932 kb on - strandat 391.932 kb on - strandat 391.932 kb on - strandat 392.185 kb on + strand, within MPMX19_04931at 392.185 kb on + strand, within MPMX19_04931at 392.185 kb on + strand, within MPMX19_04931at 392.186 kb on - strand, within MPMX19_04931at 392.186 kb on - strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.350 kb on + strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.351 kb on - strand, within MPMX19_04931at 392.353 kb on - strand, within MPMX19_04931at 392.353 kb on - strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.368 kb on + strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.369 kb on - strand, within MPMX19_04931at 392.641 kb on + strand, within MPMX19_04931at 392.641 kb on + strand, within MPMX19_04931at 392.641 kb on + strand, within MPMX19_04931at 392.642 kb on - strand, within MPMX19_04931at 392.642 kb on - strand, within MPMX19_04931at 392.737 kb on + strand, within MPMX19_04931at 392.737 kb on + strand, within MPMX19_04931at 392.737 kb on + strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931at 392.738 kb on - strand, within MPMX19_04931

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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389,976 + MPMX19_04929 0.65 -0.7
389,976 + MPMX19_04929 0.65 -0.3
389,976 + MPMX19_04929 0.65 +0.3
389,976 + MPMX19_04929 0.65 -1.2
389,977 - MPMX19_04929 0.65 -1.6
389,977 - MPMX19_04929 0.65 -0.5
389,977 - MPMX19_04929 0.65 +0.1
389,977 - MPMX19_04929 0.65 +1.1
390,066 + MPMX19_04929 0.68 +0.1
390,067 - MPMX19_04929 0.68 -2.2
390,102 + MPMX19_04929 0.70 +1.1
390,102 + MPMX19_04929 0.70 -1.2
390,102 + MPMX19_04929 0.70 +0.4
390,102 + MPMX19_04929 0.70 -0.7
390,103 - MPMX19_04929 0.70 -0.5
390,103 - MPMX19_04929 0.70 +1.3
390,111 + MPMX19_04929 0.70 +0.1
390,111 + MPMX19_04929 0.70 +0.7
390,111 + MPMX19_04929 0.70 +0.2
390,111 + MPMX19_04929 0.70 -0.2
390,111 + MPMX19_04929 0.70 -0.5
390,111 + MPMX19_04929 0.70 +0.4
390,111 + MPMX19_04929 0.70 -2.1
390,204 + MPMX19_04929 0.74 -0.9
390,204 + MPMX19_04929 0.74 +0.5
390,204 + MPMX19_04929 0.74 -1.1
390,205 - MPMX19_04929 0.74 +0.2
390,237 + MPMX19_04929 0.76 -0.5
390,237 + MPMX19_04929 0.76 +0.3
390,237 + MPMX19_04929 0.76 -1.9
390,237 + MPMX19_04929 0.76 +0.7
390,237 + MPMX19_04929 0.76 +0.2
390,237 + MPMX19_04929 0.76 +0.2
390,238 - MPMX19_04929 0.76 +0.8
390,238 - MPMX19_04929 0.76 +0.7
390,238 - MPMX19_04929 0.76 -0.1
390,238 - MPMX19_04929 0.76 -0.7
390,238 - MPMX19_04929 0.76 -1.1
390,238 - MPMX19_04929 0.76 -0.2
390,238 - MPMX19_04929 0.76 -0.2
390,238 - MPMX19_04929 0.76 +0.1
390,238 - MPMX19_04929 0.76 -0.1
390,238 - MPMX19_04929 0.76 -0.7
390,303 + MPMX19_04929 0.78 -0.5
390,303 + MPMX19_04929 0.78 +0.5
390,304 - MPMX19_04929 0.79 -0.9
390,304 - MPMX19_04929 0.79 -1.6
390,444 + MPMX19_04929 0.84 -2.1
390,444 + MPMX19_04929 0.84 +0.2
390,444 + MPMX19_04929 0.84 -1.5
390,445 - MPMX19_04929 0.85 +0.1
390,445 - MPMX19_04929 0.85 -0.5
390,495 + MPMX19_04929 0.87 -0.2
390,495 + MPMX19_04929 0.87 -1.0
390,495 + MPMX19_04929 0.87 -1.3
390,496 - MPMX19_04929 0.87 -0.6
390,496 - MPMX19_04929 0.87 -0.4
390,496 - MPMX19_04929 0.87 -0.1
390,496 - MPMX19_04929 0.87 +1.5
390,496 - MPMX19_04929 0.87 +0.9
390,496 - MPMX19_04929 0.87 -0.1
390,496 - MPMX19_04929 0.87 -1.2
390,549 + MPMX19_04929 0.89 -1.4
390,549 + MPMX19_04929 0.89 -0.5
390,550 - MPMX19_04929 0.89 +1.1
390,550 - MPMX19_04929 0.89 -2.2
390,573 + -0.9
390,573 + +0.8
390,573 + +0.7
390,573 + -0.2
390,573 + -0.3
390,574 - -0.7
390,603 + -1.2
390,603 + +1.8
390,603 + -0.3
390,604 - -0.0
390,604 - -0.5
390,937 - +0.4
390,937 - +0.1
390,937 - -0.9
390,937 - +0.2
391,087 + MPMX19_04930 0.17 -1.1
391,088 - MPMX19_04930 0.17 -0.1
391,088 - MPMX19_04930 0.17 -0.4
391,088 - MPMX19_04930 0.17 -1.0
391,157 + MPMX19_04930 0.25 -0.9
391,157 + MPMX19_04930 0.25 -1.8
391,157 + MPMX19_04930 0.25 -2.9
391,157 + MPMX19_04930 0.25 +0.5
391,157 + MPMX19_04930 0.25 -1.1
391,157 + MPMX19_04930 0.25 -0.7
391,157 + MPMX19_04930 0.25 -1.9
391,157 + MPMX19_04930 0.25 -1.2
391,157 + MPMX19_04930 0.25 -1.1
391,157 + MPMX19_04930 0.25 -1.2
391,158 - MPMX19_04930 0.25 +0.0
391,158 - MPMX19_04930 0.25 -1.2
391,158 - MPMX19_04930 0.25 -0.7
391,158 - MPMX19_04930 0.25 -0.9
391,158 - MPMX19_04930 0.25 -1.1
391,538 + MPMX19_04930 0.64 +1.2
391,538 + MPMX19_04930 0.64 -1.3
391,539 - MPMX19_04930 0.64 -0.7
391,539 - MPMX19_04930 0.64 -0.2
391,539 - MPMX19_04930 0.64 -0.8
391,539 - MPMX19_04930 0.64 -0.7
391,552 + MPMX19_04930 0.65 -0.4
391,552 + MPMX19_04930 0.65 -1.8
391,552 + MPMX19_04930 0.65 -0.6
391,552 + MPMX19_04930 0.65 -0.6
391,552 + MPMX19_04930 0.65 -0.1
391,552 + MPMX19_04930 0.65 -0.5
391,553 - MPMX19_04930 0.65 -1.4
391,553 - MPMX19_04930 0.65 -0.3
391,553 - MPMX19_04930 0.65 -0.3
391,840 + -1.6
391,840 + +0.2
391,840 + -0.2
391,840 + -1.1
391,840 + -0.9
391,840 + -1.4
391,840 + -1.2
391,840 + +0.8
391,840 + -0.2
391,840 + -1.6
391,840 + +0.5
391,840 + -0.4
391,840 + -1.0
391,840 + +0.0
391,840 + -1.5
391,840 + -2.1
391,840 + +0.7
391,840 + -1.5
391,841 - -0.4
391,841 - -0.2
391,841 - +0.4
391,841 - +0.8
391,841 - -0.7
391,841 - -0.4
391,841 - -1.2
391,841 - -1.6
391,841 - -1.1
391,841 - -0.4
391,841 - +0.1
391,841 - +1.1
391,841 - +0.1
391,841 - -0.4
391,841 - -0.7
391,841 - -1.2
391,841 - -0.3
391,841 - -0.7
391,841 - +0.5
391,841 - -0.5
391,841 - -1.5
391,841 - +1.1
391,889 + +0.7
391,889 + -1.6
391,889 + +1.1
391,890 - -0.1
391,919 - -1.0
391,919 - -1.1
391,919 - -0.2
391,929 + -1.1
391,930 - -0.5
391,930 - -2.7
391,931 + -0.4
391,931 + +0.2
391,932 - +0.5
391,932 - -1.6
391,932 - -1.2
392,185 + MPMX19_04931 0.12 +0.6
392,185 + MPMX19_04931 0.12 +0.2
392,185 + MPMX19_04931 0.12 +0.2
392,186 - MPMX19_04931 0.12 -0.1
392,186 - MPMX19_04931 0.12 -0.8
392,350 + MPMX19_04931 0.23 -0.3
392,350 + MPMX19_04931 0.23 -1.3
392,350 + MPMX19_04931 0.23 -0.2
392,350 + MPMX19_04931 0.23 -1.1
392,350 + MPMX19_04931 0.23 -1.5
392,350 + MPMX19_04931 0.23 +0.0
392,351 - MPMX19_04931 0.23 -1.8
392,351 - MPMX19_04931 0.23 -1.3
392,351 - MPMX19_04931 0.23 -0.0
392,351 - MPMX19_04931 0.23 -1.1
392,353 - MPMX19_04931 0.24 -1.2
392,353 - MPMX19_04931 0.24 +0.5
392,368 + MPMX19_04931 0.25 +0.8
392,368 + MPMX19_04931 0.25 -1.2
392,368 + MPMX19_04931 0.25 +0.7
392,368 + MPMX19_04931 0.25 -1.9
392,369 - MPMX19_04931 0.25 -0.2
392,369 - MPMX19_04931 0.25 +0.2
392,369 - MPMX19_04931 0.25 -0.4
392,369 - MPMX19_04931 0.25 -1.2
392,369 - MPMX19_04931 0.25 +0.2
392,369 - MPMX19_04931 0.25 +0.1
392,369 - MPMX19_04931 0.25 +0.6
392,369 - MPMX19_04931 0.25 -1.4
392,369 - MPMX19_04931 0.25 -0.5
392,641 + MPMX19_04931 0.43 -0.2
392,641 + MPMX19_04931 0.43 -1.6
392,641 + MPMX19_04931 0.43 +0.3
392,642 - MPMX19_04931 0.43 -2.9
392,642 - MPMX19_04931 0.43 -0.2
392,737 + MPMX19_04931 0.50 -1.6
392,737 + MPMX19_04931 0.50 -1.1
392,737 + MPMX19_04931 0.50 -1.6
392,738 - MPMX19_04931 0.50 -0.9
392,738 - MPMX19_04931 0.50 +0.1
392,738 - MPMX19_04931 0.50 -0.9
392,738 - MPMX19_04931 0.50 +0.3

Or see this region's nucleotide sequence