Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04913

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04912 and MPMX19_04913 are separated by 2 nucleotidesMPMX19_04913 and MPMX19_04914 are separated by 35 nucleotidesMPMX19_04914 and MPMX19_04915 are separated by 19 nucleotides MPMX19_04912: MPMX19_04912 - hypothetical protein, at 368,409 to 369,512 _04912 MPMX19_04913: MPMX19_04913 - hypothetical protein, at 369,515 to 370,816 _04913 MPMX19_04914: MPMX19_04914 - hypothetical protein, at 370,852 to 371,226 _04914 MPMX19_04915: MPMX19_04915 - Riboflavin transporter, at 371,246 to 372,148 _04915 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2 3at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.932 kb on - strand, within MPMX19_04912at 368.932 kb on - strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.264 kb on + strand, within MPMX19_04912at 369.264 kb on + strand, within MPMX19_04912at 369.264 kb on + strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.265 kb on - strand, within MPMX19_04912at 369.306 kb on + strand, within MPMX19_04912at 369.306 kb on + strand, within MPMX19_04912at 369.307 kb on - strand, within MPMX19_04912at 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.435 kb on + strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 369.436 kb on - strandat 370.096 kb on + strand, within MPMX19_04913at 370.096 kb on + strand, within MPMX19_04913at 370.097 kb on - strand, within MPMX19_04913at 370.097 kb on - strand, within MPMX19_04913at 370.727 kb on + strandat 370.728 kb on - strandat 370.728 kb on - strandat 370.728 kb on - strandat 370.730 kb on - strandat 370.777 kb on + strandat 370.777 kb on + strandat 370.777 kb on + strandat 370.777 kb on + strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.778 kb on - strandat 370.864 kb on + strandat 370.864 kb on + strandat 370.864 kb on + strandat 370.865 kb on - strandat 370.865 kb on - strandat 370.865 kb on - strandat 370.865 kb on - strandat 370.927 kb on + strand, within MPMX19_04914at 370.927 kb on + strand, within MPMX19_04914at 370.927 kb on + strand, within MPMX19_04914at 371.021 kb on - strand, within MPMX19_04914at 371.021 kb on - strand, within MPMX19_04914at 371.021 kb on - strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.098 kb on + strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.099 kb on - strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.164 kb on + strand, within MPMX19_04914at 371.165 kb on - strand, within MPMX19_04914at 371.165 kb on - strand, within MPMX19_04914at 371.165 kb on - strand, within MPMX19_04914at 371.212 kb on + strandat 371.213 kb on - strandat 371.213 kb on - strandat 371.224 kb on + strandat 371.224 kb on + strandat 371.224 kb on + strandat 371.224 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.247 kb on + strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.248 kb on - strandat 371.305 kb on - strandat 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.418 kb on + strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915at 371.419 kb on - strand, within MPMX19_04915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
368,565 + MPMX19_04912 0.14 -0.2
368,565 + MPMX19_04912 0.14 -0.4
368,565 + MPMX19_04912 0.14 -0.1
368,565 + MPMX19_04912 0.14 +1.2
368,565 + MPMX19_04912 0.14 -1.7
368,565 + MPMX19_04912 0.14 +2.5
368,565 + MPMX19_04912 0.14 -1.2
368,565 + MPMX19_04912 0.14 -1.1
368,565 + MPMX19_04912 0.14 -1.4
368,565 + MPMX19_04912 0.14 -0.6
368,565 + MPMX19_04912 0.14 -0.1
368,566 - MPMX19_04912 0.14 +0.1
368,566 - MPMX19_04912 0.14 -0.6
368,566 - MPMX19_04912 0.14 -0.1
368,566 - MPMX19_04912 0.14 -1.1
368,566 - MPMX19_04912 0.14 -2.0
368,781 + MPMX19_04912 0.34 +0.2
368,781 + MPMX19_04912 0.34 -1.2
368,781 + MPMX19_04912 0.34 -0.0
368,781 + MPMX19_04912 0.34 +0.5
368,781 + MPMX19_04912 0.34 -1.2
368,782 - MPMX19_04912 0.34 -0.3
368,782 - MPMX19_04912 0.34 +0.1
368,782 - MPMX19_04912 0.34 -1.2
368,782 - MPMX19_04912 0.34 -0.7
368,782 - MPMX19_04912 0.34 -2.0
368,931 + MPMX19_04912 0.47 +0.1
368,931 + MPMX19_04912 0.47 -0.7
368,931 + MPMX19_04912 0.47 -0.6
368,932 - MPMX19_04912 0.47 -1.0
368,932 - MPMX19_04912 0.47 -0.6
369,119 + MPMX19_04912 0.64 +0.1
369,119 + MPMX19_04912 0.64 -1.2
369,119 + MPMX19_04912 0.64 -0.4
369,119 + MPMX19_04912 0.64 -0.5
369,119 + MPMX19_04912 0.64 -0.5
369,119 + MPMX19_04912 0.64 +0.1
369,119 + MPMX19_04912 0.64 -1.2
369,119 + MPMX19_04912 0.64 +0.1
369,119 + MPMX19_04912 0.64 -1.1
369,119 + MPMX19_04912 0.64 -0.2
369,119 + MPMX19_04912 0.64 -1.0
369,119 + MPMX19_04912 0.64 +0.1
369,119 + MPMX19_04912 0.64 +1.7
369,119 + MPMX19_04912 0.64 -1.6
369,119 + MPMX19_04912 0.64 -0.8
369,119 + MPMX19_04912 0.64 -1.2
369,120 - MPMX19_04912 0.64 -1.4
369,120 - MPMX19_04912 0.64 -1.5
369,120 - MPMX19_04912 0.64 +0.7
369,120 - MPMX19_04912 0.64 +0.9
369,120 - MPMX19_04912 0.64 -0.2
369,120 - MPMX19_04912 0.64 +0.3
369,120 - MPMX19_04912 0.64 +0.1
369,120 - MPMX19_04912 0.64 +0.5
369,120 - MPMX19_04912 0.64 -0.2
369,120 - MPMX19_04912 0.64 +1.1
369,120 - MPMX19_04912 0.64 -0.5
369,120 - MPMX19_04912 0.64 +0.9
369,120 - MPMX19_04912 0.64 -1.2
369,120 - MPMX19_04912 0.64 -2.0
369,120 - MPMX19_04912 0.64 +1.1
369,120 - MPMX19_04912 0.64 -0.4
369,264 + MPMX19_04912 0.77 +0.6
369,264 + MPMX19_04912 0.77 +2.1
369,264 + MPMX19_04912 0.77 -0.9
369,265 - MPMX19_04912 0.78 +0.3
369,265 - MPMX19_04912 0.78 +0.4
369,265 - MPMX19_04912 0.78 -1.7
369,265 - MPMX19_04912 0.78 +1.1
369,306 + MPMX19_04912 0.81 -0.1
369,306 + MPMX19_04912 0.81 -1.2
369,307 - MPMX19_04912 0.81 -0.8
369,435 + -2.2
369,435 + -1.4
369,435 + -0.2
369,435 + -0.8
369,435 + -1.3
369,435 + -0.2
369,435 + -2.2
369,436 - -1.2
369,436 - -1.1
369,436 - -2.1
369,436 - -0.4
369,436 - -1.1
369,436 - -0.2
370,096 + MPMX19_04913 0.45 -2.4
370,096 + MPMX19_04913 0.45 -0.2
370,097 - MPMX19_04913 0.45 +0.2
370,097 - MPMX19_04913 0.45 -0.8
370,727 + -0.3
370,728 - -0.5
370,728 - -0.7
370,728 - -0.9
370,730 - -0.1
370,777 + -0.4
370,777 + -1.5
370,777 + -1.8
370,777 + -0.0
370,778 - -0.5
370,778 - -0.2
370,778 - +1.1
370,778 - -1.2
370,778 - -0.7
370,778 - -1.0
370,778 - +0.8
370,778 - -1.0
370,778 - +0.3
370,778 - +1.7
370,864 + -0.9
370,864 + -1.8
370,864 + -0.1
370,865 - +0.9
370,865 - -0.9
370,865 - -0.7
370,865 - -1.2
370,927 + MPMX19_04914 0.20 +1.1
370,927 + MPMX19_04914 0.20 -1.4
370,927 + MPMX19_04914 0.20 -0.7
371,021 - MPMX19_04914 0.45 -1.8
371,021 - MPMX19_04914 0.45 +0.7
371,021 - MPMX19_04914 0.45 -0.1
371,098 + MPMX19_04914 0.66 +0.3
371,098 + MPMX19_04914 0.66 -0.9
371,098 + MPMX19_04914 0.66 +0.9
371,098 + MPMX19_04914 0.66 -1.1
371,098 + MPMX19_04914 0.66 -0.7
371,098 + MPMX19_04914 0.66 -0.8
371,098 + MPMX19_04914 0.66 +1.1
371,098 + MPMX19_04914 0.66 -0.2
371,099 - MPMX19_04914 0.66 -1.7
371,099 - MPMX19_04914 0.66 +0.5
371,099 - MPMX19_04914 0.66 +1.2
371,099 - MPMX19_04914 0.66 -1.7
371,099 - MPMX19_04914 0.66 -1.4
371,099 - MPMX19_04914 0.66 -1.2
371,164 + MPMX19_04914 0.83 -1.1
371,164 + MPMX19_04914 0.83 -0.7
371,164 + MPMX19_04914 0.83 -0.2
371,164 + MPMX19_04914 0.83 -1.2
371,165 - MPMX19_04914 0.83 -0.1
371,165 - MPMX19_04914 0.83 -0.6
371,165 - MPMX19_04914 0.83 +0.2
371,212 + -0.7
371,213 - -0.3
371,213 - -0.7
371,224 + +0.5
371,224 + -0.7
371,224 + -0.6
371,224 + +2.8
371,247 + -0.1
371,247 + -1.2
371,247 + -0.1
371,247 + -1.9
371,247 + +0.3
371,247 + -0.2
371,248 - -1.2
371,248 - +0.6
371,248 - -0.9
371,248 - +0.2
371,248 - +1.2
371,248 - -0.7
371,305 - -0.9
371,418 + MPMX19_04915 0.19 -0.1
371,418 + MPMX19_04915 0.19 +1.1
371,418 + MPMX19_04915 0.19 -0.7
371,418 + MPMX19_04915 0.19 +1.3
371,418 + MPMX19_04915 0.19 -0.3
371,418 + MPMX19_04915 0.19 -0.1
371,418 + MPMX19_04915 0.19 +0.2
371,418 + MPMX19_04915 0.19 +0.3
371,418 + MPMX19_04915 0.19 +1.3
371,418 + MPMX19_04915 0.19 -1.5
371,418 + MPMX19_04915 0.19 -0.2
371,418 + MPMX19_04915 0.19 -0.5
371,418 + MPMX19_04915 0.19 +0.1
371,418 + MPMX19_04915 0.19 -0.2
371,419 - MPMX19_04915 0.19 -0.5
371,419 - MPMX19_04915 0.19 +0.5
371,419 - MPMX19_04915 0.19 -0.2
371,419 - MPMX19_04915 0.19 -0.4
371,419 - MPMX19_04915 0.19 +0.9
371,419 - MPMX19_04915 0.19 -0.9
371,419 - MPMX19_04915 0.19 -0.7
371,419 - MPMX19_04915 0.19 +0.9
371,419 - MPMX19_04915 0.19 +0.5
371,419 - MPMX19_04915 0.19 -0.6
371,419 - MPMX19_04915 0.19 -1.2
371,419 - MPMX19_04915 0.19 -0.5
371,419 - MPMX19_04915 0.19 +0.7
371,419 - MPMX19_04915 0.19 +0.3
371,419 - MPMX19_04915 0.19 -0.3
371,419 - MPMX19_04915 0.19 -2.7

Or see this region's nucleotide sequence