Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04909

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04907 and MPMX19_04908 are separated by 52 nucleotidesMPMX19_04908 and MPMX19_04909 are separated by 122 nucleotidesMPMX19_04909 and MPMX19_04910 are separated by 116 nucleotides MPMX19_04907: MPMX19_04907 - hypothetical protein, at 362,222 to 363,241 _04907 MPMX19_04908: MPMX19_04908 - hypothetical protein, at 363,294 to 363,605 _04908 MPMX19_04909: MPMX19_04909 - hypothetical protein, at 363,728 to 364,207 _04909 MPMX19_04910: MPMX19_04910 - hypothetical protein, at 364,324 to 366,099 _04910 Position (kb) 363 364 365Strain fitness (log2 ratio) -2 -1 0 1 2at 362.785 kb on + strand, within MPMX19_04907at 362.786 kb on - strand, within MPMX19_04907at 362.786 kb on - strand, within MPMX19_04907at 362.865 kb on + strand, within MPMX19_04907at 362.865 kb on + strand, within MPMX19_04907at 362.866 kb on - strand, within MPMX19_04907at 362.866 kb on - strand, within MPMX19_04907at 362.866 kb on - strand, within MPMX19_04907at 362.866 kb on - strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.933 kb on + strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.934 kb on - strand, within MPMX19_04907at 362.948 kb on + strand, within MPMX19_04907at 362.948 kb on + strand, within MPMX19_04907at 362.949 kb on - strand, within MPMX19_04907at 362.949 kb on - strand, within MPMX19_04907at 362.949 kb on - strand, within MPMX19_04907at 362.949 kb on - strand, within MPMX19_04907at 362.949 kb on - strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.963 kb on + strand, within MPMX19_04907at 362.964 kb on - strand, within MPMX19_04907at 362.964 kb on - strand, within MPMX19_04907at 362.964 kb on - strand, within MPMX19_04907at 362.964 kb on - strand, within MPMX19_04907at 362.964 kb on - strand, within MPMX19_04907at 362.964 kb on - strand, within MPMX19_04907at 363.296 kb on - strandat 363.296 kb on - strandat 363.296 kb on - strandat 363.296 kb on - strandat 363.304 kb on + strandat 363.305 kb on - strandat 363.373 kb on + strand, within MPMX19_04908at 363.624 kb on + strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.188 kb on + strandat 364.189 kb on - strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.412 kb on + strandat 364.412 kb on + strandat 364.413 kb on - strandat 364.413 kb on - strandat 364.413 kb on - strandat 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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362,785 + MPMX19_04907 0.55 -2.1
362,786 - MPMX19_04907 0.55 -2.1
362,786 - MPMX19_04907 0.55 -1.6
362,865 + MPMX19_04907 0.63 -1.1
362,865 + MPMX19_04907 0.63 -1.5
362,866 - MPMX19_04907 0.63 -1.2
362,866 - MPMX19_04907 0.63 -2.4
362,866 - MPMX19_04907 0.63 -0.8
362,866 - MPMX19_04907 0.63 -0.4
362,933 + MPMX19_04907 0.70 -1.4
362,933 + MPMX19_04907 0.70 -1.0
362,933 + MPMX19_04907 0.70 -1.2
362,933 + MPMX19_04907 0.70 -1.7
362,933 + MPMX19_04907 0.70 -1.0
362,933 + MPMX19_04907 0.70 -0.6
362,933 + MPMX19_04907 0.70 +0.5
362,933 + MPMX19_04907 0.70 -1.2
362,934 - MPMX19_04907 0.70 -1.2
362,934 - MPMX19_04907 0.70 +0.3
362,934 - MPMX19_04907 0.70 +0.4
362,934 - MPMX19_04907 0.70 -0.2
362,934 - MPMX19_04907 0.70 -0.8
362,934 - MPMX19_04907 0.70 +0.1
362,934 - MPMX19_04907 0.70 -1.1
362,934 - MPMX19_04907 0.70 -0.6
362,934 - MPMX19_04907 0.70 -1.7
362,934 - MPMX19_04907 0.70 -2.2
362,948 + MPMX19_04907 0.71 -0.6
362,948 + MPMX19_04907 0.71 -0.4
362,949 - MPMX19_04907 0.71 +0.8
362,949 - MPMX19_04907 0.71 -0.2
362,949 - MPMX19_04907 0.71 -0.7
362,949 - MPMX19_04907 0.71 -0.7
362,949 - MPMX19_04907 0.71 +0.3
362,963 + MPMX19_04907 0.73 -1.5
362,963 + MPMX19_04907 0.73 -1.1
362,963 + MPMX19_04907 0.73 +1.5
362,963 + MPMX19_04907 0.73 +0.1
362,963 + MPMX19_04907 0.73 -0.5
362,963 + MPMX19_04907 0.73 +1.4
362,963 + MPMX19_04907 0.73 +2.1
362,963 + MPMX19_04907 0.73 +0.6
362,963 + MPMX19_04907 0.73 +0.8
362,964 - MPMX19_04907 0.73 -0.5
362,964 - MPMX19_04907 0.73 -0.7
362,964 - MPMX19_04907 0.73 +2.1
362,964 - MPMX19_04907 0.73 -0.7
362,964 - MPMX19_04907 0.73 -0.3
362,964 - MPMX19_04907 0.73 +0.4
363,296 - -2.0
363,296 - -1.0
363,296 - -2.1
363,296 - -1.5
363,304 + +0.7
363,305 - +0.5
363,373 + MPMX19_04908 0.25 -0.8
363,624 + +0.5
363,625 - -0.5
363,625 - +0.3
363,625 - -1.6
363,625 - -1.0
363,625 - +0.4
363,625 - -1.3
363,987 + MPMX19_04909 0.54 +0.3
363,987 + MPMX19_04909 0.54 -0.9
363,987 + MPMX19_04909 0.54 -2.0
363,987 + MPMX19_04909 0.54 -0.9
363,988 - MPMX19_04909 0.54 +1.1
363,988 - MPMX19_04909 0.54 -0.0
363,988 - MPMX19_04909 0.54 +0.8
363,988 - MPMX19_04909 0.54 -0.5
364,005 + MPMX19_04909 0.58 -1.1
364,005 + MPMX19_04909 0.58 +0.8
364,005 + MPMX19_04909 0.58 +1.1
364,005 + MPMX19_04909 0.58 -0.6
364,005 + MPMX19_04909 0.58 +1.6
364,006 - MPMX19_04909 0.58 -0.4
364,006 - MPMX19_04909 0.58 -0.6
364,006 - MPMX19_04909 0.58 -0.0
364,188 + -1.2
364,189 - -1.0
364,246 + -1.8
364,246 + -0.7
364,246 + +0.1
364,246 + +0.1
364,246 + +0.5
364,246 + +0.3
364,247 - +1.1
364,247 - +0.4
364,247 - -1.8
364,247 - -0.1
364,247 - -0.4
364,247 - -0.7
364,247 - -0.8
364,412 + +0.3
364,412 + +0.8
364,413 - +0.5
364,413 - +0.3
364,413 - -0.9
364,781 + MPMX19_04910 0.26 -0.2
364,781 + MPMX19_04910 0.26 -0.7
364,781 + MPMX19_04910 0.26 +0.2
364,781 + MPMX19_04910 0.26 +0.7
364,782 - MPMX19_04910 0.26 -0.9
364,782 - MPMX19_04910 0.26 +0.3
364,782 - MPMX19_04910 0.26 -0.4
364,782 - MPMX19_04910 0.26 +0.1

Or see this region's nucleotide sequence