Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04875 and MPMX19_04876 overlap by 4 nucleotides MPMX19_04876 and MPMX19_04877 overlap by 4 nucleotides MPMX19_04877 and MPMX19_04878 are separated by 114 nucleotides
MPMX19_04875: MPMX19_04875 - Sensor histidine kinase WalK, at 318,481 to 319,428
_04875
MPMX19_04876: MPMX19_04876 - hypothetical protein, at 319,425 to 320,213
_04876
MPMX19_04877: MPMX19_04877 - hypothetical protein, at 320,210 to 322,096
_04877
MPMX19_04878: MPMX19_04878 - Agmatine deiminase, at 322,211 to 323,254
_04878
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.282 kb on - strand, within MPMX19_04875 at 319.581 kb on + strand, within MPMX19_04876 at 319.581 kb on + strand, within MPMX19_04876 at 319.581 kb on + strand, within MPMX19_04876 at 319.582 kb on - strand, within MPMX19_04876 at 319.582 kb on - strand, within MPMX19_04876 at 319.582 kb on - strand, within MPMX19_04876 at 319.582 kb on - strand, within MPMX19_04876 at 319.582 kb on - strand, within MPMX19_04876 at 319.582 kb on - strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.861 kb on + strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.862 kb on - strand, within MPMX19_04876 at 319.896 kb on - strand, within MPMX19_04876 at 320.166 kb on + strand at 320.166 kb on + strand at 320.166 kb on + strand at 320.166 kb on + strand at 320.166 kb on + strand at 320.166 kb on + strand at 320.166 kb on + strand at 320.166 kb on + strand at 320.167 kb on - strand at 320.167 kb on - strand at 320.167 kb on - strand at 320.167 kb on - strand at 320.211 kb on + strand at 320.211 kb on + strand at 320.211 kb on + strand at 320.211 kb on + strand at 320.211 kb on + strand at 320.211 kb on + strand at 320.212 kb on - strand at 320.212 kb on - strand at 320.212 kb on - strand at 320.212 kb on - strand at 320.212 kb on - strand at 320.574 kb on + strand, within MPMX19_04877 at 320.575 kb on - strand, within MPMX19_04877 at 320.575 kb on - strand, within MPMX19_04877 at 320.575 kb on - strand, within MPMX19_04877 at 320.575 kb on - strand, within MPMX19_04877 at 320.871 kb on + strand, within MPMX19_04877 at 320.871 kb on + strand, within MPMX19_04877 at 320.871 kb on + strand, within MPMX19_04877 at 320.871 kb on + strand, within MPMX19_04877 at 320.871 kb on + strand, within MPMX19_04877 at 320.872 kb on - strand, within MPMX19_04877 at 320.872 kb on - strand, within MPMX19_04877 at 320.872 kb on - strand, within MPMX19_04877 at 320.872 kb on - strand, within MPMX19_04877 at 320.872 kb on - strand, within MPMX19_04877 at 320.872 kb on - strand, within MPMX19_04877 at 321.072 kb on + strand, within MPMX19_04877 at 321.072 kb on + strand, within MPMX19_04877 at 321.072 kb on + strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.073 kb on - strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.306 kb on + strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.307 kb on - strand, within MPMX19_04877 at 321.340 kb on - strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.771 kb on + strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.772 kb on - strand, within MPMX19_04877 at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.978 kb on + strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 321.979 kb on - strand at 322.070 kb on + strand at 322.070 kb on + strand at 322.070 kb on + strand at 322.070 kb on + strand at 322.071 kb on - strand at 322.270 kb on - strand at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.386 kb on + strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.387 kb on - strand, within MPMX19_04878 at 322.398 kb on + strand, within MPMX19_04878 at 322.398 kb on + strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.399 kb on - strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.629 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.875 kb on + strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878 at 322.876 kb on - strand, within MPMX19_04878
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 319,282 - MPMX19_04875 0.84 -1.0 319,581 + MPMX19_04876 0.20 +2.1 319,581 + MPMX19_04876 0.20 -1.5 319,581 + MPMX19_04876 0.20 -0.9 319,582 - MPMX19_04876 0.20 -1.2 319,582 - MPMX19_04876 0.20 -0.2 319,582 - MPMX19_04876 0.20 +1.3 319,582 - MPMX19_04876 0.20 +1.9 319,582 - MPMX19_04876 0.20 +0.8 319,582 - MPMX19_04876 0.20 -1.2 319,861 + MPMX19_04876 0.55 -1.2 319,861 + MPMX19_04876 0.55 -0.6 319,861 + MPMX19_04876 0.55 +0.1 319,861 + MPMX19_04876 0.55 -1.9 319,861 + MPMX19_04876 0.55 +0.1 319,861 + MPMX19_04876 0.55 +0.5 319,861 + MPMX19_04876 0.55 -1.2 319,861 + MPMX19_04876 0.55 -2.4 319,862 - MPMX19_04876 0.55 -0.1 319,862 - MPMX19_04876 0.55 +0.8 319,862 - MPMX19_04876 0.55 -1.3 319,862 - MPMX19_04876 0.55 -2.1 319,862 - MPMX19_04876 0.55 +0.5 319,862 - MPMX19_04876 0.55 -0.9 319,862 - MPMX19_04876 0.55 -0.2 319,862 - MPMX19_04876 0.55 -0.6 319,862 - MPMX19_04876 0.55 -1.1 319,896 - MPMX19_04876 0.60 +2.7 320,166 + -0.4 320,166 + -1.6 320,166 + -0.0 320,166 + -0.9 320,166 + -2.4 320,166 + +0.1 320,166 + +0.1 320,166 + -0.9 320,167 - -1.0 320,167 - -0.5 320,167 - -1.6 320,167 - -1.1 320,211 + +0.7 320,211 + +0.2 320,211 + +1.7 320,211 + -0.3 320,211 + +0.2 320,211 + -0.2 320,212 - -0.7 320,212 - -0.2 320,212 - -1.9 320,212 - -0.6 320,212 - -0.4 320,574 + MPMX19_04877 0.19 +0.3 320,575 - MPMX19_04877 0.19 -0.2 320,575 - MPMX19_04877 0.19 +1.3 320,575 - MPMX19_04877 0.19 -0.5 320,575 - MPMX19_04877 0.19 -0.0 320,871 + MPMX19_04877 0.35 -1.7 320,871 + MPMX19_04877 0.35 -1.7 320,871 + MPMX19_04877 0.35 -0.2 320,871 + MPMX19_04877 0.35 +0.1 320,871 + MPMX19_04877 0.35 -1.2 320,872 - MPMX19_04877 0.35 -1.5 320,872 - MPMX19_04877 0.35 -0.6 320,872 - MPMX19_04877 0.35 -1.2 320,872 - MPMX19_04877 0.35 +0.5 320,872 - MPMX19_04877 0.35 -0.2 320,872 - MPMX19_04877 0.35 -0.9 321,072 + MPMX19_04877 0.46 -1.5 321,072 + MPMX19_04877 0.46 -1.2 321,072 + MPMX19_04877 0.46 -1.2 321,073 - MPMX19_04877 0.46 -0.1 321,073 - MPMX19_04877 0.46 -0.8 321,073 - MPMX19_04877 0.46 -0.8 321,073 - MPMX19_04877 0.46 +1.1 321,073 - MPMX19_04877 0.46 -0.2 321,073 - MPMX19_04877 0.46 -1.4 321,073 - MPMX19_04877 0.46 +0.3 321,306 + MPMX19_04877 0.58 -0.3 321,306 + MPMX19_04877 0.58 +0.5 321,306 + MPMX19_04877 0.58 -0.9 321,306 + MPMX19_04877 0.58 -0.7 321,306 + MPMX19_04877 0.58 +0.9 321,306 + MPMX19_04877 0.58 -0.9 321,307 - MPMX19_04877 0.58 +0.1 321,307 - MPMX19_04877 0.58 -1.8 321,307 - MPMX19_04877 0.58 -1.4 321,307 - MPMX19_04877 0.58 -0.1 321,307 - MPMX19_04877 0.58 +0.8 321,307 - MPMX19_04877 0.58 -1.4 321,340 - MPMX19_04877 0.60 +0.9 321,771 + MPMX19_04877 0.83 -1.4 321,771 + MPMX19_04877 0.83 -0.7 321,771 + MPMX19_04877 0.83 -0.4 321,771 + MPMX19_04877 0.83 -0.2 321,771 + MPMX19_04877 0.83 -1.1 321,771 + MPMX19_04877 0.83 -0.4 321,771 + MPMX19_04877 0.83 -1.1 321,771 + MPMX19_04877 0.83 -1.1 321,771 + MPMX19_04877 0.83 -1.3 321,772 - MPMX19_04877 0.83 -2.8 321,772 - MPMX19_04877 0.83 -2.5 321,772 - MPMX19_04877 0.83 -0.2 321,772 - MPMX19_04877 0.83 +1.5 321,772 - MPMX19_04877 0.83 +0.1 321,772 - MPMX19_04877 0.83 -0.9 321,772 - MPMX19_04877 0.83 +0.1 321,978 + -0.2 321,978 + +0.1 321,978 + +1.3 321,978 + +1.8 321,978 + -0.1 321,978 + -1.4 321,978 + -0.7 321,978 + -0.9 321,979 - +0.5 321,979 - -0.8 321,979 - -1.4 321,979 - -0.4 321,979 - +0.1 321,979 - +0.3 321,979 - -2.2 321,979 - -0.1 321,979 - -0.5 321,979 - +0.0 321,979 - -0.3 321,979 - -1.1 322,070 + -1.0 322,070 + -0.8 322,070 + -0.9 322,070 + -1.0 322,071 - -1.1 322,270 - -0.9 322,386 + MPMX19_04878 0.17 -1.4 322,386 + MPMX19_04878 0.17 -0.1 322,386 + MPMX19_04878 0.17 -0.5 322,386 + MPMX19_04878 0.17 +0.5 322,386 + MPMX19_04878 0.17 +1.1 322,387 - MPMX19_04878 0.17 -0.9 322,387 - MPMX19_04878 0.17 +0.2 322,387 - MPMX19_04878 0.17 +0.1 322,387 - MPMX19_04878 0.17 -0.6 322,387 - MPMX19_04878 0.17 -0.6 322,387 - MPMX19_04878 0.17 +2.1 322,387 - MPMX19_04878 0.17 -0.3 322,387 - MPMX19_04878 0.17 +0.3 322,387 - MPMX19_04878 0.17 -0.8 322,387 - MPMX19_04878 0.17 +0.4 322,387 - MPMX19_04878 0.17 -0.2 322,398 + MPMX19_04878 0.18 -0.5 322,398 + MPMX19_04878 0.18 -0.2 322,399 - MPMX19_04878 0.18 +1.3 322,399 - MPMX19_04878 0.18 -0.1 322,399 - MPMX19_04878 0.18 -2.2 322,399 - MPMX19_04878 0.18 -0.9 322,629 + MPMX19_04878 0.40 -1.5 322,629 + MPMX19_04878 0.40 +1.1 322,629 + MPMX19_04878 0.40 -1.4 322,629 + MPMX19_04878 0.40 +0.3 322,875 + MPMX19_04878 0.64 +0.2 322,875 + MPMX19_04878 0.64 -0.1 322,875 + MPMX19_04878 0.64 -1.7 322,875 + MPMX19_04878 0.64 -1.3 322,875 + MPMX19_04878 0.64 -0.4 322,875 + MPMX19_04878 0.64 -1.7 322,876 - MPMX19_04878 0.64 -0.7 322,876 - MPMX19_04878 0.64 +0.3 322,876 - MPMX19_04878 0.64 +0.2 322,876 - MPMX19_04878 0.64 +0.1 322,876 - MPMX19_04878 0.64 +0.5 322,876 - MPMX19_04878 0.64 -0.9 322,876 - MPMX19_04878 0.64 +0.1 322,876 - MPMX19_04878 0.64 -0.3
Or see this region's nucleotide sequence