Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04865

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04862 and MPMX19_04863 are separated by 18 nucleotidesMPMX19_04863 and MPMX19_04864 are separated by 76 nucleotidesMPMX19_04864 and MPMX19_04865 overlap by 1 nucleotidesMPMX19_04865 and MPMX19_04866 are separated by 238 nucleotides MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752 _04862 MPMX19_04863: MPMX19_04863 - Transcriptional regulatory protein LnrK, at 301,771 to 302,505 _04863 MPMX19_04864: MPMX19_04864 - hypothetical protein, at 302,582 to 302,680 _04864 MPMX19_04865: MPMX19_04865 - Sensor histidine kinase RcsC, at 302,680 to 304,167 _04865 MPMX19_04866: MPMX19_04866 - hypothetical protein, at 304,406 to 306,673 _04866 Position (kb) 302 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2 3at 301.750 kb on + strandat 301.750 kb on + strandat 301.750 kb on + strandat 301.750 kb on + strandat 301.751 kb on - strandat 301.751 kb on - strandat 301.751 kb on - strandat 301.751 kb on - strandat 301.751 kb on - strandat 302.279 kb on + strand, within MPMX19_04863at 302.279 kb on + strand, within MPMX19_04863at 302.279 kb on + strand, within MPMX19_04863at 302.366 kb on + strand, within MPMX19_04863at 302.366 kb on + strand, within MPMX19_04863at 302.366 kb on + strand, within MPMX19_04863at 302.367 kb on - strand, within MPMX19_04863at 302.532 kb on - strandat 302.539 kb on + strandat 302.540 kb on - strandat 302.540 kb on - strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.583 kb on + strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.584 kb on - strandat 302.603 kb on + strand, within MPMX19_04864at 302.603 kb on + strand, within MPMX19_04864at 302.603 kb on + strand, within MPMX19_04864at 302.603 kb on + strand, within MPMX19_04864at 302.604 kb on - strand, within MPMX19_04864at 302.604 kb on - strand, within MPMX19_04864at 302.984 kb on + strand, within MPMX19_04865at 302.984 kb on + strand, within MPMX19_04865at 302.984 kb on + strand, within MPMX19_04865at 302.984 kb on + strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 302.985 kb on - strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.496 kb on + strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.497 kb on - strand, within MPMX19_04865at 303.833 kb on + strand, within MPMX19_04865at 303.833 kb on + strand, within MPMX19_04865at 303.833 kb on + strand, within MPMX19_04865at 303.833 kb on + strand, within MPMX19_04865at 303.833 kb on + strand, within MPMX19_04865at 303.834 kb on - strand, within MPMX19_04865at 303.834 kb on - strand, within MPMX19_04865at 303.834 kb on - strand, within MPMX19_04865at 303.834 kb on - strand, within MPMX19_04865at 303.834 kb on - strand, within MPMX19_04865at 303.834 kb on - strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.016 kb on + strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.017 kb on - strand, within MPMX19_04865at 304.077 kb on + strandat 304.077 kb on + strandat 304.077 kb on + strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.078 kb on - strandat 304.187 kb on + strandat 304.235 kb on + strandat 304.288 kb on - strandat 304.339 kb on - strandat 304.512 kb on + strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.513 kb on - strandat 304.689 kb on + strand, within MPMX19_04866at 304.689 kb on + strand, within MPMX19_04866at 304.690 kb on - strand, within MPMX19_04866at 304.690 kb on - strand, within MPMX19_04866at 304.690 kb on - strand, within MPMX19_04866at 304.755 kb on + strand, within MPMX19_04866at 304.755 kb on + strand, within MPMX19_04866at 304.755 kb on + strand, within MPMX19_04866at 304.755 kb on + strand, within MPMX19_04866at 304.755 kb on + strand, within MPMX19_04866at 304.755 kb on + strand, within MPMX19_04866at 304.756 kb on - strand, within MPMX19_04866at 304.756 kb on - strand, within MPMX19_04866at 304.756 kb on - strand, within MPMX19_04866at 304.756 kb on - strand, within MPMX19_04866at 304.756 kb on - strand, within MPMX19_04866at 304.794 kb on + strand, within MPMX19_04866at 304.794 kb on + strand, within MPMX19_04866at 304.794 kb on + strand, within MPMX19_04866at 304.795 kb on - strand, within MPMX19_04866at 304.795 kb on - strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.875 kb on + strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.876 kb on - strand, within MPMX19_04866at 304.935 kb on + strand, within MPMX19_04866at 304.937 kb on + strand, within MPMX19_04866at 304.937 kb on + strand, within MPMX19_04866at 304.938 kb on - strand, within MPMX19_04866at 305.164 kb on - strand, within MPMX19_04866at 305.164 kb on - strand, within MPMX19_04866at 305.164 kb on - strand, within MPMX19_04866

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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301,750 + -2.1
301,750 + -0.6
301,750 + -2.0
301,750 + +0.1
301,751 - +1.1
301,751 - +0.9
301,751 - -0.5
301,751 - -0.2
301,751 - -0.7
302,279 + MPMX19_04863 0.69 -0.4
302,279 + MPMX19_04863 0.69 -1.4
302,279 + MPMX19_04863 0.69 +0.1
302,366 + MPMX19_04863 0.81 +0.1
302,366 + MPMX19_04863 0.81 +0.7
302,366 + MPMX19_04863 0.81 -0.6
302,367 - MPMX19_04863 0.81 -0.9
302,532 - -1.6
302,539 + -0.8
302,540 - +0.3
302,540 - -0.7
302,583 + -0.6
302,583 + -0.9
302,583 + -0.4
302,583 + -0.1
302,583 + -1.8
302,583 + -0.2
302,583 + -1.6
302,584 - -0.5
302,584 - +0.4
302,584 - -1.7
302,584 - -0.5
302,584 - -0.2
302,584 - -0.7
302,584 - -1.6
302,584 - -0.7
302,584 - -1.2
302,584 - -0.9
302,603 + MPMX19_04864 0.21 -0.0
302,603 + MPMX19_04864 0.21 -1.2
302,603 + MPMX19_04864 0.21 -0.9
302,603 + MPMX19_04864 0.21 -0.9
302,604 - MPMX19_04864 0.22 -0.1
302,604 - MPMX19_04864 0.22 -0.2
302,984 + MPMX19_04865 0.20 +0.1
302,984 + MPMX19_04865 0.20 -2.3
302,984 + MPMX19_04865 0.20 +0.5
302,984 + MPMX19_04865 0.20 +0.1
302,985 - MPMX19_04865 0.20 -1.8
302,985 - MPMX19_04865 0.20 -1.1
302,985 - MPMX19_04865 0.20 -1.1
302,985 - MPMX19_04865 0.20 +0.5
302,985 - MPMX19_04865 0.20 -1.2
303,496 + MPMX19_04865 0.55 -0.6
303,496 + MPMX19_04865 0.55 -0.5
303,496 + MPMX19_04865 0.55 -0.0
303,496 + MPMX19_04865 0.55 -0.3
303,497 - MPMX19_04865 0.55 -0.1
303,497 - MPMX19_04865 0.55 +1.3
303,497 - MPMX19_04865 0.55 +0.0
303,497 - MPMX19_04865 0.55 +0.1
303,497 - MPMX19_04865 0.55 -0.2
303,497 - MPMX19_04865 0.55 +1.8
303,497 - MPMX19_04865 0.55 +0.4
303,833 + MPMX19_04865 0.77 -0.9
303,833 + MPMX19_04865 0.77 +2.1
303,833 + MPMX19_04865 0.77 +3.1
303,833 + MPMX19_04865 0.77 -0.9
303,833 + MPMX19_04865 0.77 -0.5
303,834 - MPMX19_04865 0.78 -0.9
303,834 - MPMX19_04865 0.78 +0.8
303,834 - MPMX19_04865 0.78 -1.1
303,834 - MPMX19_04865 0.78 -2.4
303,834 - MPMX19_04865 0.78 +0.5
303,834 - MPMX19_04865 0.78 +0.8
304,016 + MPMX19_04865 0.90 +0.3
304,016 + MPMX19_04865 0.90 +0.5
304,016 + MPMX19_04865 0.90 -0.2
304,016 + MPMX19_04865 0.90 -0.3
304,016 + MPMX19_04865 0.90 -0.5
304,016 + MPMX19_04865 0.90 +0.1
304,016 + MPMX19_04865 0.90 +0.7
304,016 + MPMX19_04865 0.90 +0.5
304,016 + MPMX19_04865 0.90 +0.3
304,017 - MPMX19_04865 0.90 +0.3
304,017 - MPMX19_04865 0.90 +0.3
304,017 - MPMX19_04865 0.90 +0.5
304,017 - MPMX19_04865 0.90 -0.5
304,017 - MPMX19_04865 0.90 -0.9
304,017 - MPMX19_04865 0.90 -1.8
304,017 - MPMX19_04865 0.90 +0.3
304,017 - MPMX19_04865 0.90 -2.3
304,017 - MPMX19_04865 0.90 -1.1
304,017 - MPMX19_04865 0.90 -1.4
304,017 - MPMX19_04865 0.90 +1.7
304,077 + -0.3
304,077 + +0.4
304,077 + -0.1
304,078 - +0.1
304,078 - -0.7
304,078 - +0.1
304,078 - -0.5
304,078 - +1.3
304,078 - -1.0
304,078 - +0.0
304,078 - +1.7
304,187 + -0.7
304,235 + +0.4
304,288 - -0.7
304,339 - -0.7
304,512 + -0.7
304,513 - -1.7
304,513 - -0.1
304,513 - -0.5
304,513 - -0.1
304,513 - +1.9
304,513 - +1.1
304,513 - -0.9
304,513 - -0.9
304,689 + MPMX19_04866 0.12 -1.4
304,689 + MPMX19_04866 0.12 +0.7
304,690 - MPMX19_04866 0.13 -1.2
304,690 - MPMX19_04866 0.13 -0.0
304,690 - MPMX19_04866 0.13 -0.3
304,755 + MPMX19_04866 0.15 -1.0
304,755 + MPMX19_04866 0.15 +0.5
304,755 + MPMX19_04866 0.15 -0.5
304,755 + MPMX19_04866 0.15 +0.3
304,755 + MPMX19_04866 0.15 -0.9
304,755 + MPMX19_04866 0.15 -0.6
304,756 - MPMX19_04866 0.15 +0.1
304,756 - MPMX19_04866 0.15 -0.4
304,756 - MPMX19_04866 0.15 +0.6
304,756 - MPMX19_04866 0.15 -0.9
304,756 - MPMX19_04866 0.15 +0.9
304,794 + MPMX19_04866 0.17 +0.5
304,794 + MPMX19_04866 0.17 +0.3
304,794 + MPMX19_04866 0.17 -0.5
304,795 - MPMX19_04866 0.17 -0.5
304,795 - MPMX19_04866 0.17 -2.7
304,875 + MPMX19_04866 0.21 -0.8
304,875 + MPMX19_04866 0.21 +0.8
304,875 + MPMX19_04866 0.21 -0.2
304,875 + MPMX19_04866 0.21 -0.8
304,875 + MPMX19_04866 0.21 -0.2
304,875 + MPMX19_04866 0.21 -0.6
304,875 + MPMX19_04866 0.21 -0.4
304,875 + MPMX19_04866 0.21 -1.0
304,876 - MPMX19_04866 0.21 +0.7
304,876 - MPMX19_04866 0.21 -0.8
304,876 - MPMX19_04866 0.21 +0.4
304,876 - MPMX19_04866 0.21 +0.1
304,876 - MPMX19_04866 0.21 +0.5
304,876 - MPMX19_04866 0.21 +1.1
304,876 - MPMX19_04866 0.21 -0.1
304,935 + MPMX19_04866 0.23 +0.9
304,937 + MPMX19_04866 0.23 -0.8
304,937 + MPMX19_04866 0.23 -0.4
304,938 - MPMX19_04866 0.23 +1.6
305,164 - MPMX19_04866 0.33 -0.2
305,164 - MPMX19_04866 0.33 -1.2
305,164 - MPMX19_04866 0.33 +0.7

Or see this region's nucleotide sequence