Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04840

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04839 and MPMX19_04840 are separated by 24 nucleotidesMPMX19_04840 and MPMX19_04841 are separated by 268 nucleotides MPMX19_04839: MPMX19_04839 - hypothetical protein, at 245,126 to 248,149 _04839 MPMX19_04840: MPMX19_04840 - Leu/Ile/Val-binding protein, at 248,174 to 249,283 _04840 MPMX19_04841: MPMX19_04841 - Aconitate hydratase B, at 249,552 to 252,143 _04841 Position (kb) 248 249 250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.283 kb on + strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.284 kb on - strand, within MPMX19_04839at 247.309 kb on + strand, within MPMX19_04839at 247.310 kb on - strand, within MPMX19_04839at 247.310 kb on - strand, within MPMX19_04839at 247.310 kb on - strand, within MPMX19_04839at 247.322 kb on + strand, within MPMX19_04839at 247.322 kb on + strand, within MPMX19_04839at 247.323 kb on - strand, within MPMX19_04839at 247.323 kb on - strand, within MPMX19_04839at 247.323 kb on - strand, within MPMX19_04839at 247.323 kb on - strand, within MPMX19_04839at 247.850 kb on + strandat 247.850 kb on + strandat 247.851 kb on - strandat 247.851 kb on - strandat 247.851 kb on - strandat 247.851 kb on - strandat 248.054 kb on + strandat 248.100 kb on - strandat 248.101 kb on + strandat 248.217 kb on + strandat 248.217 kb on + strandat 248.217 kb on + strandat 248.218 kb on - strandat 248.218 kb on - strandat 248.218 kb on - strandat 248.218 kb on - strandat 248.226 kb on + strandat 248.226 kb on + strandat 248.227 kb on - strandat 248.227 kb on - strandat 248.227 kb on - strandat 248.227 kb on - strandat 248.227 kb on - strandat 248.227 kb on - strandat 248.286 kb on + strand, within MPMX19_04840at 248.286 kb on + strand, within MPMX19_04840at 248.286 kb on + strand, within MPMX19_04840at 248.286 kb on + strand, within MPMX19_04840at 248.286 kb on + strand, within MPMX19_04840at 248.287 kb on - strand, within MPMX19_04840at 248.287 kb on - strand, within MPMX19_04840at 248.287 kb on - strand, within MPMX19_04840at 248.287 kb on - strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.376 kb on + strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.377 kb on - strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.382 kb on + strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.383 kb on - strand, within MPMX19_04840at 248.481 kb on + strand, within MPMX19_04840at 248.481 kb on + strand, within MPMX19_04840at 248.481 kb on + strand, within MPMX19_04840at 248.481 kb on + strand, within MPMX19_04840at 248.482 kb on - strand, within MPMX19_04840at 248.482 kb on - strand, within MPMX19_04840at 248.520 kb on + strand, within MPMX19_04840at 248.520 kb on + strand, within MPMX19_04840at 248.520 kb on + strand, within MPMX19_04840at 248.520 kb on + strand, within MPMX19_04840at 248.520 kb on + strand, within MPMX19_04840at 248.521 kb on - strand, within MPMX19_04840at 248.521 kb on - strand, within MPMX19_04840at 248.521 kb on - strand, within MPMX19_04840at 248.521 kb on - strand, within MPMX19_04840at 248.521 kb on - strand, within MPMX19_04840at 248.622 kb on + strand, within MPMX19_04840at 248.622 kb on + strand, within MPMX19_04840at 248.623 kb on - strand, within MPMX19_04840at 248.623 kb on - strand, within MPMX19_04840at 248.623 kb on - strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.626 kb on - strand, within MPMX19_04840at 248.626 kb on - strand, within MPMX19_04840at 248.626 kb on - strand, within MPMX19_04840at 248.707 kb on - strand, within MPMX19_04840at 248.769 kb on + strand, within MPMX19_04840at 248.769 kb on + strand, within MPMX19_04840at 248.770 kb on - strand, within MPMX19_04840at 248.770 kb on - strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.952 kb on + strand, within MPMX19_04840at 248.952 kb on + strand, within MPMX19_04840at 248.953 kb on - strand, within MPMX19_04840at 248.953 kb on - strand, within MPMX19_04840at 249.147 kb on + strand, within MPMX19_04840at 249.147 kb on + strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.204 kb on - strandat 249.204 kb on - strandat 249.204 kb on - strandat 249.204 kb on - strandat 249.323 kb on - strandat 249.530 kb on + strandat 249.550 kb on + strandat 249.550 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
247,283 + MPMX19_04839 0.71 +0.3
247,283 + MPMX19_04839 0.71 +0.8
247,283 + MPMX19_04839 0.71 -0.7
247,283 + MPMX19_04839 0.71 +1.1
247,283 + MPMX19_04839 0.71 -1.6
247,283 + MPMX19_04839 0.71 +0.9
247,283 + MPMX19_04839 0.71 -1.1
247,283 + MPMX19_04839 0.71 +0.2
247,283 + MPMX19_04839 0.71 +1.1
247,283 + MPMX19_04839 0.71 -0.4
247,283 + MPMX19_04839 0.71 +0.1
247,283 + MPMX19_04839 0.71 -0.7
247,283 + MPMX19_04839 0.71 -2.1
247,283 + MPMX19_04839 0.71 -1.7
247,283 + MPMX19_04839 0.71 -1.3
247,283 + MPMX19_04839 0.71 -1.5
247,283 + MPMX19_04839 0.71 +0.0
247,283 + MPMX19_04839 0.71 +0.3
247,283 + MPMX19_04839 0.71 -1.3
247,283 + MPMX19_04839 0.71 +0.1
247,283 + MPMX19_04839 0.71 -0.3
247,283 + MPMX19_04839 0.71 -0.5
247,283 + MPMX19_04839 0.71 +1.0
247,283 + MPMX19_04839 0.71 -1.7
247,283 + MPMX19_04839 0.71 -0.4
247,284 - MPMX19_04839 0.71 -1.0
247,284 - MPMX19_04839 0.71 -0.7
247,284 - MPMX19_04839 0.71 -1.2
247,284 - MPMX19_04839 0.71 +0.8
247,284 - MPMX19_04839 0.71 -1.5
247,284 - MPMX19_04839 0.71 -0.7
247,284 - MPMX19_04839 0.71 -0.2
247,284 - MPMX19_04839 0.71 -0.4
247,284 - MPMX19_04839 0.71 -0.7
247,284 - MPMX19_04839 0.71 -1.9
247,284 - MPMX19_04839 0.71 +1.2
247,284 - MPMX19_04839 0.71 -0.1
247,284 - MPMX19_04839 0.71 -0.5
247,284 - MPMX19_04839 0.71 +0.5
247,284 - MPMX19_04839 0.71 -0.1
247,284 - MPMX19_04839 0.71 -1.0
247,284 - MPMX19_04839 0.71 +0.1
247,284 - MPMX19_04839 0.71 +1.4
247,284 - MPMX19_04839 0.71 +1.4
247,284 - MPMX19_04839 0.71 -0.5
247,284 - MPMX19_04839 0.71 -0.2
247,309 + MPMX19_04839 0.72 -0.4
247,310 - MPMX19_04839 0.72 -0.2
247,310 - MPMX19_04839 0.72 -1.6
247,310 - MPMX19_04839 0.72 -0.5
247,322 + MPMX19_04839 0.73 -1.5
247,322 + MPMX19_04839 0.73 +0.3
247,323 - MPMX19_04839 0.73 +0.5
247,323 - MPMX19_04839 0.73 -0.5
247,323 - MPMX19_04839 0.73 -0.5
247,323 - MPMX19_04839 0.73 -0.8
247,850 + -2.7
247,850 + -0.9
247,851 - -2.6
247,851 - -0.0
247,851 - -1.4
247,851 - -0.1
248,054 + +1.3
248,100 - +0.2
248,101 + -0.4
248,217 + +0.3
248,217 + -1.1
248,217 + -2.2
248,218 - -0.3
248,218 - +1.5
248,218 - -0.0
248,218 - -2.3
248,226 + -0.4
248,226 + -2.1
248,227 - -0.9
248,227 - -0.6
248,227 - -1.0
248,227 - -0.9
248,227 - +0.5
248,227 - -1.5
248,286 + MPMX19_04840 0.10 +0.2
248,286 + MPMX19_04840 0.10 +0.8
248,286 + MPMX19_04840 0.10 -0.9
248,286 + MPMX19_04840 0.10 -0.1
248,286 + MPMX19_04840 0.10 +0.2
248,287 - MPMX19_04840 0.10 -0.7
248,287 - MPMX19_04840 0.10 -1.4
248,287 - MPMX19_04840 0.10 -1.0
248,287 - MPMX19_04840 0.10 +0.8
248,376 + MPMX19_04840 0.18 +0.9
248,376 + MPMX19_04840 0.18 -0.7
248,376 + MPMX19_04840 0.18 +0.3
248,376 + MPMX19_04840 0.18 -1.2
248,376 + MPMX19_04840 0.18 +0.3
248,376 + MPMX19_04840 0.18 +0.0
248,376 + MPMX19_04840 0.18 +0.3
248,376 + MPMX19_04840 0.18 -0.5
248,376 + MPMX19_04840 0.18 -0.1
248,377 - MPMX19_04840 0.18 +1.1
248,377 - MPMX19_04840 0.18 -1.0
248,377 - MPMX19_04840 0.18 +0.3
248,377 - MPMX19_04840 0.18 -1.4
248,377 - MPMX19_04840 0.18 -1.6
248,377 - MPMX19_04840 0.18 -0.5
248,377 - MPMX19_04840 0.18 +0.2
248,377 - MPMX19_04840 0.18 -0.9
248,377 - MPMX19_04840 0.18 +0.6
248,377 - MPMX19_04840 0.18 +0.6
248,377 - MPMX19_04840 0.18 -0.0
248,377 - MPMX19_04840 0.18 -0.4
248,377 - MPMX19_04840 0.18 -1.3
248,382 + MPMX19_04840 0.19 -0.3
248,382 + MPMX19_04840 0.19 -0.1
248,382 + MPMX19_04840 0.19 +0.0
248,382 + MPMX19_04840 0.19 -1.2
248,382 + MPMX19_04840 0.19 -0.0
248,382 + MPMX19_04840 0.19 +1.1
248,382 + MPMX19_04840 0.19 -0.7
248,382 + MPMX19_04840 0.19 -0.3
248,382 + MPMX19_04840 0.19 -0.1
248,382 + MPMX19_04840 0.19 -0.4
248,382 + MPMX19_04840 0.19 -0.2
248,382 + MPMX19_04840 0.19 -1.1
248,382 + MPMX19_04840 0.19 -0.2
248,382 + MPMX19_04840 0.19 +1.2
248,382 + MPMX19_04840 0.19 -0.5
248,382 + MPMX19_04840 0.19 +0.1
248,382 + MPMX19_04840 0.19 +0.1
248,382 + MPMX19_04840 0.19 +0.9
248,383 - MPMX19_04840 0.19 -0.4
248,383 - MPMX19_04840 0.19 -0.2
248,383 - MPMX19_04840 0.19 +0.5
248,383 - MPMX19_04840 0.19 -3.0
248,383 - MPMX19_04840 0.19 -1.5
248,383 - MPMX19_04840 0.19 -0.7
248,383 - MPMX19_04840 0.19 -0.5
248,383 - MPMX19_04840 0.19 -0.2
248,383 - MPMX19_04840 0.19 +0.4
248,383 - MPMX19_04840 0.19 +0.1
248,383 - MPMX19_04840 0.19 -0.8
248,383 - MPMX19_04840 0.19 -1.1
248,383 - MPMX19_04840 0.19 -0.3
248,383 - MPMX19_04840 0.19 +0.3
248,383 - MPMX19_04840 0.19 -1.8
248,383 - MPMX19_04840 0.19 -1.2
248,383 - MPMX19_04840 0.19 +0.8
248,383 - MPMX19_04840 0.19 -0.2
248,383 - MPMX19_04840 0.19 -0.7
248,383 - MPMX19_04840 0.19 +1.2
248,481 + MPMX19_04840 0.28 -0.5
248,481 + MPMX19_04840 0.28 +0.6
248,481 + MPMX19_04840 0.28 -0.3
248,481 + MPMX19_04840 0.28 -0.9
248,482 - MPMX19_04840 0.28 -1.9
248,482 - MPMX19_04840 0.28 +1.7
248,520 + MPMX19_04840 0.31 +1.4
248,520 + MPMX19_04840 0.31 -1.1
248,520 + MPMX19_04840 0.31 -0.7
248,520 + MPMX19_04840 0.31 -0.6
248,520 + MPMX19_04840 0.31 +2.1
248,521 - MPMX19_04840 0.31 -0.8
248,521 - MPMX19_04840 0.31 -0.1
248,521 - MPMX19_04840 0.31 +0.5
248,521 - MPMX19_04840 0.31 -1.8
248,521 - MPMX19_04840 0.31 +0.3
248,622 + MPMX19_04840 0.40 -0.5
248,622 + MPMX19_04840 0.40 -0.0
248,623 - MPMX19_04840 0.40 +0.5
248,623 - MPMX19_04840 0.40 +0.5
248,623 - MPMX19_04840 0.40 -0.1
248,625 + MPMX19_04840 0.41 -0.7
248,625 + MPMX19_04840 0.41 +2.1
248,625 + MPMX19_04840 0.41 -0.0
248,625 + MPMX19_04840 0.41 -0.7
248,626 - MPMX19_04840 0.41 -0.5
248,626 - MPMX19_04840 0.41 -2.0
248,626 - MPMX19_04840 0.41 -0.7
248,707 - MPMX19_04840 0.48 -0.5
248,769 + MPMX19_04840 0.54 +0.0
248,769 + MPMX19_04840 0.54 -0.7
248,770 - MPMX19_04840 0.54 -0.2
248,770 - MPMX19_04840 0.54 +0.1
248,826 + MPMX19_04840 0.59 -0.5
248,826 + MPMX19_04840 0.59 -1.1
248,826 + MPMX19_04840 0.59 -0.7
248,826 + MPMX19_04840 0.59 +1.3
248,826 + MPMX19_04840 0.59 -1.7
248,826 + MPMX19_04840 0.59 +0.5
248,826 + MPMX19_04840 0.59 -0.3
248,826 + MPMX19_04840 0.59 -0.9
248,826 + MPMX19_04840 0.59 -0.3
248,826 + MPMX19_04840 0.59 -1.8
248,826 + MPMX19_04840 0.59 -0.3
248,827 - MPMX19_04840 0.59 -0.6
248,827 - MPMX19_04840 0.59 -0.4
248,827 - MPMX19_04840 0.59 +0.2
248,827 - MPMX19_04840 0.59 -2.8
248,827 - MPMX19_04840 0.59 -1.0
248,827 - MPMX19_04840 0.59 -1.5
248,827 - MPMX19_04840 0.59 -1.8
248,827 - MPMX19_04840 0.59 +0.1
248,827 - MPMX19_04840 0.59 -0.5
248,952 + MPMX19_04840 0.70 -0.3
248,952 + MPMX19_04840 0.70 +0.3
248,953 - MPMX19_04840 0.70 -1.0
248,953 - MPMX19_04840 0.70 -0.6
249,147 + MPMX19_04840 0.88 +0.3
249,147 + MPMX19_04840 0.88 -0.8
249,148 - MPMX19_04840 0.88 -0.7
249,148 - MPMX19_04840 0.88 +0.2
249,148 - MPMX19_04840 0.88 -1.0
249,148 - MPMX19_04840 0.88 -0.2
249,148 - MPMX19_04840 0.88 +0.0
249,148 - MPMX19_04840 0.88 -1.2
249,204 - -0.2
249,204 - -1.3
249,204 - -0.5
249,204 - -0.7
249,323 - -0.3
249,530 + -1.4
249,550 + -1.2
249,550 + -1.0

Or see this region's nucleotide sequence