Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04838

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04837 and MPMX19_04838 are separated by 34 nucleotidesMPMX19_04838 and MPMX19_04839 are separated by 458 nucleotides MPMX19_04837: MPMX19_04837 - hypothetical protein, at 243,413 to 244,306 _04837 MPMX19_04838: MPMX19_04838 - Heme oxygenase (staphylobilin-producing), at 244,341 to 244,667 _04838 MPMX19_04839: MPMX19_04839 - hypothetical protein, at 245,126 to 248,149 _04839 Position (kb) 244 245Strain fitness (log2 ratio) -2 -1 0 1at 243.403 kb on + strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.404 kb on - strandat 243.404 kb on - strandat 243.404 kb on - strandat 243.461 kb on - strandat 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.192 kb on + strand, within MPMX19_04837at 244.192 kb on + strand, within MPMX19_04837at 244.192 kb on + strand, within MPMX19_04837at 244.193 kb on - strand, within MPMX19_04837at 244.193 kb on - strand, within MPMX19_04837at 244.408 kb on + strand, within MPMX19_04838at 244.408 kb on + strand, within MPMX19_04838at 244.408 kb on + strand, within MPMX19_04838at 244.408 kb on + strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.715 kb on + strandat 244.715 kb on + strandat 244.716 kb on - strandat 244.762 kb on + strandat 244.762 kb on + strandat 244.762 kb on + strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.811 kb on + strandat 244.811 kb on + strandat 244.812 kb on - strandat 244.812 kb on - strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.873 kb on + strandat 245.053 kb on - strandat 245.059 kb on + strandat 245.060 kb on - strandat 245.063 kb on - strandat 245.065 kb on - strandat 245.070 kb on + strandat 245.071 kb on - strandat 245.077 kb on + strandat 245.588 kb on + strand, within MPMX19_04839

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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243,403 + -0.2
243,403 + +0.4
243,403 + -0.8
243,403 + -1.7
243,404 - +0.1
243,404 - +1.1
243,404 - -1.0
243,461 - -0.2
243,714 + MPMX19_04837 0.34 -0.0
243,714 + MPMX19_04837 0.34 -1.0
243,714 + MPMX19_04837 0.34 -0.1
243,714 + MPMX19_04837 0.34 -0.1
243,714 + MPMX19_04837 0.34 -0.4
243,714 + MPMX19_04837 0.34 -0.7
243,714 + MPMX19_04837 0.34 +0.4
243,714 + MPMX19_04837 0.34 -0.2
243,714 + MPMX19_04837 0.34 -1.5
243,714 + MPMX19_04837 0.34 -1.2
243,714 + MPMX19_04837 0.34 +0.3
243,715 - MPMX19_04837 0.34 +0.4
243,715 - MPMX19_04837 0.34 -1.0
243,715 - MPMX19_04837 0.34 -0.9
243,715 - MPMX19_04837 0.34 -0.2
243,715 - MPMX19_04837 0.34 -0.2
243,715 - MPMX19_04837 0.34 -0.9
243,715 - MPMX19_04837 0.34 -1.3
243,715 - MPMX19_04837 0.34 -0.5
243,715 - MPMX19_04837 0.34 -0.4
243,783 + MPMX19_04837 0.41 -0.2
243,783 + MPMX19_04837 0.41 -1.3
243,783 + MPMX19_04837 0.41 -0.7
243,783 + MPMX19_04837 0.41 -1.5
243,783 + MPMX19_04837 0.41 +0.7
243,783 + MPMX19_04837 0.41 +0.4
243,783 + MPMX19_04837 0.41 -1.7
243,783 + MPMX19_04837 0.41 -2.1
243,783 + MPMX19_04837 0.41 +1.1
243,783 + MPMX19_04837 0.41 -0.9
243,783 + MPMX19_04837 0.41 -0.5
243,783 + MPMX19_04837 0.41 -0.4
243,783 + MPMX19_04837 0.41 -1.1
243,783 + MPMX19_04837 0.41 +1.5
243,783 + MPMX19_04837 0.41 -1.4
243,783 + MPMX19_04837 0.41 +0.0
243,783 + MPMX19_04837 0.41 -2.0
243,783 + MPMX19_04837 0.41 +0.3
243,783 - MPMX19_04837 0.41 +1.1
243,784 - MPMX19_04837 0.41 +0.8
243,784 - MPMX19_04837 0.41 -0.9
243,784 - MPMX19_04837 0.41 -0.0
243,784 - MPMX19_04837 0.41 -1.4
243,784 - MPMX19_04837 0.41 +0.1
243,784 - MPMX19_04837 0.41 -0.5
243,784 - MPMX19_04837 0.41 -2.1
244,107 + MPMX19_04837 0.78 -0.2
244,107 + MPMX19_04837 0.78 +0.9
244,107 + MPMX19_04837 0.78 -0.9
244,107 + MPMX19_04837 0.78 -1.6
244,107 + MPMX19_04837 0.78 -0.5
244,107 + MPMX19_04837 0.78 -0.7
244,107 + MPMX19_04837 0.78 -1.4
244,107 + MPMX19_04837 0.78 +0.1
244,107 + MPMX19_04837 0.78 +1.1
244,107 + MPMX19_04837 0.78 +0.9
244,107 + MPMX19_04837 0.78 -1.2
244,107 + MPMX19_04837 0.78 -2.4
244,108 - MPMX19_04837 0.78 -0.9
244,108 - MPMX19_04837 0.78 -0.7
244,108 - MPMX19_04837 0.78 -1.1
244,108 - MPMX19_04837 0.78 -1.6
244,108 - MPMX19_04837 0.78 -1.1
244,108 - MPMX19_04837 0.78 -0.2
244,108 - MPMX19_04837 0.78 -0.6
244,192 + MPMX19_04837 0.87 -0.7
244,192 + MPMX19_04837 0.87 +0.1
244,192 + MPMX19_04837 0.87 -0.6
244,193 - MPMX19_04837 0.87 +0.7
244,193 - MPMX19_04837 0.87 +0.9
244,408 + MPMX19_04838 0.20 -0.3
244,408 + MPMX19_04838 0.20 -0.0
244,408 + MPMX19_04838 0.20 +0.4
244,408 + MPMX19_04838 0.20 -0.0
244,409 - MPMX19_04838 0.21 -1.4
244,409 - MPMX19_04838 0.21 +0.2
244,409 - MPMX19_04838 0.21 -0.7
244,409 - MPMX19_04838 0.21 -1.5
244,409 - MPMX19_04838 0.21 -0.4
244,513 + MPMX19_04838 0.53 +0.9
244,513 + MPMX19_04838 0.53 +1.2
244,513 + MPMX19_04838 0.53 -2.6
244,513 + MPMX19_04838 0.53 -0.2
244,513 + MPMX19_04838 0.53 -0.2
244,513 + MPMX19_04838 0.53 +0.2
244,514 - MPMX19_04838 0.53 -1.4
244,514 - MPMX19_04838 0.53 -0.6
244,514 - MPMX19_04838 0.53 +0.1
244,514 - MPMX19_04838 0.53 -0.1
244,514 - MPMX19_04838 0.53 -1.4
244,715 + +0.1
244,715 + -0.6
244,716 - +0.1
244,762 + -2.4
244,762 + -0.7
244,762 + +0.9
244,763 - -0.4
244,763 - -0.2
244,763 - +0.5
244,763 - -0.0
244,811 + -2.4
244,811 + -0.5
244,812 - -0.2
244,812 - -0.7
244,854 + -0.6
244,854 + +0.1
244,854 + +0.3
244,854 + -0.7
244,854 + -1.2
244,854 + -0.9
244,854 + -0.7
244,854 + -0.3
244,854 + -2.1
244,854 + -0.6
244,854 + -1.2
244,854 + +0.3
244,855 - +0.6
244,855 - +0.2
244,855 - +0.1
244,855 - -1.3
244,855 - -0.2
244,855 - -0.6
244,855 - +0.1
244,855 - -0.5
244,855 - -2.2
244,855 - +0.5
244,855 - -0.5
244,855 - -0.6
244,855 - +1.2
244,855 - -0.5
244,855 - -0.2
244,873 + -0.2
245,053 - -1.2
245,059 + -0.8
245,060 - -0.6
245,063 - -1.4
245,065 - -0.4
245,070 + -1.7
245,071 - +1.1
245,077 + -2.4
245,588 + MPMX19_04839 0.15 -0.5

Or see this region's nucleotide sequence