Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04833 and MPMX19_04834 overlap by 4 nucleotides MPMX19_04834 and MPMX19_04835 are separated by 15 nucleotides MPMX19_04835 and MPMX19_04836 are separated by 22 nucleotides MPMX19_04836 and MPMX19_04837 are separated by 184 nucleotides
MPMX19_04833: MPMX19_04833 - Cysteine desulfurase, at 240,658 to 241,920
_04833
MPMX19_04834: MPMX19_04834 - Zinc-dependent sulfurtransferase SufU, at 241,917 to 242,384
_04834
MPMX19_04835: MPMX19_04835 - hypothetical protein, at 242,400 to 242,861
_04835
MPMX19_04836: MPMX19_04836 - Iron-binding protein IscA, at 242,884 to 243,228
_04836
MPMX19_04837: MPMX19_04837 - hypothetical protein, at 243,413 to 244,306
_04837
Position (kb) 242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 242.547 kb on + strand, within MPMX19_04835 at 242.547 kb on + strand, within MPMX19_04835 at 242.601 kb on + strand, within MPMX19_04835 at 242.646 kb on + strand, within MPMX19_04835 at 242.646 kb on + strand, within MPMX19_04835 at 242.653 kb on + strand, within MPMX19_04835 at 242.687 kb on + strand, within MPMX19_04835 at 242.687 kb on + strand, within MPMX19_04835 at 242.852 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 242.869 kb on + strand at 243.237 kb on - strand at 243.332 kb on + strand at 243.333 kb on - strand at 243.333 kb on - strand at 243.403 kb on + strand at 243.403 kb on + strand at 243.403 kb on + strand at 243.403 kb on + strand at 243.404 kb on - strand at 243.404 kb on - strand at 243.404 kb on - strand at 243.461 kb on - strand at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.714 kb on + strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.715 kb on - strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on + strand, within MPMX19_04837 at 243.783 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837 at 243.784 kb on - strand, within MPMX19_04837
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 242,547 + MPMX19_04835 0.32 -1.6 242,547 + MPMX19_04835 0.32 -1.1 242,601 + MPMX19_04835 0.44 -1.4 242,646 + MPMX19_04835 0.53 -1.5 242,646 + MPMX19_04835 0.53 -1.1 242,653 + MPMX19_04835 0.55 -0.7 242,687 + MPMX19_04835 0.62 -0.2 242,687 + MPMX19_04835 0.62 -0.2 242,852 + +0.9 242,869 + +0.3 242,869 + -0.8 242,869 + +0.5 242,869 + -1.6 242,869 + -1.3 243,237 - -0.2 243,332 + +0.7 243,333 - +0.6 243,333 - -0.8 243,403 + -0.2 243,403 + +0.4 243,403 + -0.8 243,403 + -1.7 243,404 - +0.1 243,404 - +1.1 243,404 - -1.0 243,461 - -0.2 243,714 + MPMX19_04837 0.34 -0.0 243,714 + MPMX19_04837 0.34 -1.0 243,714 + MPMX19_04837 0.34 -0.1 243,714 + MPMX19_04837 0.34 -0.1 243,714 + MPMX19_04837 0.34 -0.4 243,714 + MPMX19_04837 0.34 -0.7 243,714 + MPMX19_04837 0.34 +0.4 243,714 + MPMX19_04837 0.34 -0.2 243,714 + MPMX19_04837 0.34 -1.5 243,714 + MPMX19_04837 0.34 -1.2 243,714 + MPMX19_04837 0.34 +0.3 243,715 - MPMX19_04837 0.34 +0.4 243,715 - MPMX19_04837 0.34 -1.0 243,715 - MPMX19_04837 0.34 -0.9 243,715 - MPMX19_04837 0.34 -0.2 243,715 - MPMX19_04837 0.34 -0.2 243,715 - MPMX19_04837 0.34 -0.9 243,715 - MPMX19_04837 0.34 -1.3 243,715 - MPMX19_04837 0.34 -0.5 243,715 - MPMX19_04837 0.34 -0.4 243,783 + MPMX19_04837 0.41 -0.2 243,783 + MPMX19_04837 0.41 -1.3 243,783 + MPMX19_04837 0.41 -0.7 243,783 + MPMX19_04837 0.41 -1.5 243,783 + MPMX19_04837 0.41 +0.7 243,783 + MPMX19_04837 0.41 +0.4 243,783 + MPMX19_04837 0.41 -1.7 243,783 + MPMX19_04837 0.41 -2.1 243,783 + MPMX19_04837 0.41 +1.1 243,783 + MPMX19_04837 0.41 -0.9 243,783 + MPMX19_04837 0.41 -0.5 243,783 + MPMX19_04837 0.41 -0.4 243,783 + MPMX19_04837 0.41 -1.1 243,783 + MPMX19_04837 0.41 +1.5 243,783 + MPMX19_04837 0.41 -1.4 243,783 + MPMX19_04837 0.41 +0.0 243,783 + MPMX19_04837 0.41 -2.0 243,783 + MPMX19_04837 0.41 +0.3 243,783 - MPMX19_04837 0.41 +1.1 243,784 - MPMX19_04837 0.41 +0.8 243,784 - MPMX19_04837 0.41 -0.9 243,784 - MPMX19_04837 0.41 -0.0 243,784 - MPMX19_04837 0.41 -1.4 243,784 - MPMX19_04837 0.41 +0.1 243,784 - MPMX19_04837 0.41 -0.5 243,784 - MPMX19_04837 0.41 -2.1
Or see this region's nucleotide sequence