Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04801 and MPMX19_04802 are separated by 304 nucleotides MPMX19_04802 and MPMX19_04803 are separated by 84 nucleotides MPMX19_04803 and MPMX19_04804 are separated by 153 nucleotides
MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219
_04801
MPMX19_04802: MPMX19_04802 - tRNA-Met, at 203,524 to 203,600
_04802
MPMX19_04803: MPMX19_04803 - 5S ribosomal RNA, at 203,685 to 203,795
_04803
MPMX19_04804: MPMX19_04804 - 23S ribosomal RNA, at 203,949 to 206,684
_04804
Position (kb) 203
204 Strain fitness (log2 ratio) -1
0
1 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.773 kb on + strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 202.774 kb on - strand, within MPMX19_04801 at 203.000 kb on + strand, within MPMX19_04801 at 203.001 kb on - strand, within MPMX19_04801 at 203.001 kb on - strand, within MPMX19_04801 at 203.001 kb on - strand, within MPMX19_04801 at 203.001 kb on - strand, within MPMX19_04801 at 203.115 kb on + strand at 203.115 kb on + strand at 203.116 kb on - strand at 203.257 kb on + strand at 203.257 kb on + strand at 203.258 kb on - strand at 203.258 kb on - strand at 203.258 kb on - strand at 203.258 kb on - strand at 203.469 kb on - strand at 203.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 202,773 + MPMX19_04801 0.62 -0.2 202,773 + MPMX19_04801 0.62 +1.1 202,773 + MPMX19_04801 0.62 -0.4 202,773 + MPMX19_04801 0.62 -0.2 202,773 + MPMX19_04801 0.62 -0.2 202,773 + MPMX19_04801 0.62 +0.1 202,773 + MPMX19_04801 0.62 -0.8 202,773 + MPMX19_04801 0.62 +0.5 202,774 - MPMX19_04801 0.62 -0.0 202,774 - MPMX19_04801 0.62 -0.5 202,774 - MPMX19_04801 0.62 -0.7 202,774 - MPMX19_04801 0.62 -1.7 202,774 - MPMX19_04801 0.62 -0.5 202,774 - MPMX19_04801 0.62 -0.0 202,774 - MPMX19_04801 0.62 -0.9 202,774 - MPMX19_04801 0.62 -1.2 203,000 + MPMX19_04801 0.81 -0.0 203,001 - MPMX19_04801 0.81 +1.5 203,001 - MPMX19_04801 0.81 -0.9 203,001 - MPMX19_04801 0.81 -1.2 203,001 - MPMX19_04801 0.81 -1.1 203,115 + +0.1 203,115 + +0.7 203,116 - +0.1 203,257 + -0.9 203,257 + -0.1 203,258 - -0.2 203,258 - +0.4 203,258 - -1.2 203,258 - +0.5 203,469 - -1.4 203,974 - -0.5
Or see this region's nucleotide sequence