Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04799 and MPMX19_04800 are separated by 3 nucleotides MPMX19_04800 and MPMX19_04801 are separated by 325 nucleotides
MPMX19_04799: MPMX19_04799 - D-inositol-3-phosphate glycosyltransferase, at 200,009 to 201,121
_04799
MPMX19_04800: MPMX19_04800 - hypothetical protein, at 201,125 to 201,718
_04800
MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219
_04801
Position (kb) 201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.973 kb on - strand, within MPMX19_04799 at 201.027 kb on + strand at 201.028 kb on - strand at 201.129 kb on + strand at 201.129 kb on + strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.143 kb on + strand at 201.144 kb on - strand at 201.144 kb on - strand at 201.192 kb on + strand, within MPMX19_04800 at 201.192 kb on + strand, within MPMX19_04800 at 201.252 kb on + strand, within MPMX19_04800 at 201.253 kb on - strand, within MPMX19_04800 at 201.258 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.306 kb on + strand, within MPMX19_04800 at 201.307 kb on - strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.431 kb on - strand, within MPMX19_04800 at 201.704 kb on + strand at 201.704 kb on + strand at 201.705 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.809 kb on + strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.900 kb on - strand at 201.931 kb on + strand at 201.931 kb on + strand at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.278 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.438 kb on - strand, within MPMX19_04801 at 202.479 kb on + strand, within MPMX19_04801 at 202.551 kb on + strand, within MPMX19_04801 at 202.551 kb on + strand, within MPMX19_04801 at 202.551 kb on + strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.553 kb on + strand, within MPMX19_04801 at 202.553 kb on + strand, within MPMX19_04801 at 202.553 kb on + strand, within MPMX19_04801 at 202.554 kb on - strand, within MPMX19_04801 at 202.554 kb on - strand, within MPMX19_04801
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 200,508 + MPMX19_04799 0.45 +0.5 200,508 + MPMX19_04799 0.45 -0.2 200,508 + MPMX19_04799 0.45 -1.3 200,508 + MPMX19_04799 0.45 -0.7 200,509 - MPMX19_04799 0.45 -0.4 200,509 - MPMX19_04799 0.45 -0.5 200,509 - MPMX19_04799 0.45 -0.9 200,838 + MPMX19_04799 0.74 +1.5 200,838 + MPMX19_04799 0.74 -1.9 200,838 + MPMX19_04799 0.74 -0.2 200,838 + MPMX19_04799 0.74 +0.1 200,838 + MPMX19_04799 0.74 +0.5 200,838 + MPMX19_04799 0.74 -0.5 200,838 + MPMX19_04799 0.74 +1.1 200,839 - MPMX19_04799 0.75 -1.2 200,839 - MPMX19_04799 0.75 -0.1 200,839 - MPMX19_04799 0.75 -0.0 200,839 - MPMX19_04799 0.75 -0.8 200,839 - MPMX19_04799 0.75 -0.9 200,839 - MPMX19_04799 0.75 -1.7 200,839 - MPMX19_04799 0.75 +0.5 200,920 - MPMX19_04799 0.82 -0.5 200,920 - MPMX19_04799 0.82 -0.1 200,972 + MPMX19_04799 0.87 -0.7 200,972 + MPMX19_04799 0.87 -1.6 200,973 - MPMX19_04799 0.87 -1.5 201,027 + -1.1 201,028 - -1.5 201,129 + -0.5 201,129 + +1.1 201,130 - +0.3 201,130 - -1.8 201,130 - -0.4 201,143 + -1.2 201,144 - +0.3 201,144 - -0.5 201,192 + MPMX19_04800 0.11 +1.3 201,192 + MPMX19_04800 0.11 -1.7 201,252 + MPMX19_04800 0.21 -0.1 201,253 - MPMX19_04800 0.22 -0.0 201,258 + MPMX19_04800 0.22 +0.1 201,304 + MPMX19_04800 0.30 -1.1 201,304 + MPMX19_04800 0.30 -0.7 201,304 + MPMX19_04800 0.30 -2.1 201,305 - MPMX19_04800 0.30 +0.2 201,305 - MPMX19_04800 0.30 +0.9 201,305 - MPMX19_04800 0.30 +1.7 201,305 - MPMX19_04800 0.30 -0.1 201,306 + MPMX19_04800 0.30 -0.2 201,307 - MPMX19_04800 0.31 -0.2 201,345 + MPMX19_04800 0.37 +0.1 201,345 + MPMX19_04800 0.37 -0.3 201,345 + MPMX19_04800 0.37 -0.9 201,345 + MPMX19_04800 0.37 -2.1 201,345 + MPMX19_04800 0.37 +0.5 201,345 + MPMX19_04800 0.37 +0.8 201,345 + MPMX19_04800 0.37 +0.1 201,345 + MPMX19_04800 0.37 -2.2 201,345 + MPMX19_04800 0.37 -0.2 201,346 - MPMX19_04800 0.37 -1.1 201,346 - MPMX19_04800 0.37 -0.2 201,346 - MPMX19_04800 0.37 +1.1 201,346 - MPMX19_04800 0.37 +0.2 201,346 - MPMX19_04800 0.37 -0.5 201,346 - MPMX19_04800 0.37 +0.5 201,346 - MPMX19_04800 0.37 +0.6 201,346 - MPMX19_04800 0.37 -0.2 201,346 - MPMX19_04800 0.37 +0.1 201,346 - MPMX19_04800 0.37 +0.3 201,346 - MPMX19_04800 0.37 -0.4 201,346 - MPMX19_04800 0.37 -0.4 201,346 - MPMX19_04800 0.37 +1.1 201,431 - MPMX19_04800 0.52 +2.7 201,704 + -1.7 201,704 + -0.5 201,705 - +0.9 201,757 - -0.5 201,757 - -0.7 201,757 - -0.9 201,809 + +1.8 201,810 - -0.1 201,810 - -0.7 201,872 + -1.8 201,872 + -0.9 201,872 + -0.6 201,873 - -0.8 201,873 - +0.2 201,873 - -0.7 201,873 - -0.6 201,873 - +0.1 201,873 - +0.5 201,873 - -1.7 201,873 - +0.1 201,873 - +1.1 201,876 + -0.5 201,876 + +0.1 201,876 + -1.1 201,876 + -0.9 201,876 + -0.8 201,876 + -0.3 201,876 + -0.9 201,876 + -1.5 201,876 + -2.1 201,876 + -0.3 201,876 + -1.2 201,876 + -2.9 201,876 + -0.3 201,876 + +0.5 201,876 + -0.4 201,876 + -2.0 201,876 + -2.1 201,877 - +0.5 201,877 - -1.9 201,877 - -1.1 201,877 - -0.1 201,877 - -2.4 201,877 - +2.7 201,877 - -2.2 201,877 - -0.9 201,877 - -1.7 201,877 - +0.8 201,900 - +0.3 201,931 + -0.5 201,931 + +0.5 202,201 + MPMX19_04801 0.13 +0.4 202,201 + MPMX19_04801 0.13 -0.2 202,201 + MPMX19_04801 0.13 -0.2 202,201 + MPMX19_04801 0.13 -0.5 202,201 + MPMX19_04801 0.13 -0.2 202,202 - MPMX19_04801 0.13 -1.1 202,202 - MPMX19_04801 0.13 +0.1 202,202 - MPMX19_04801 0.13 +0.3 202,202 - MPMX19_04801 0.13 +1.1 202,202 - MPMX19_04801 0.13 +0.5 202,202 - MPMX19_04801 0.13 +0.3 202,206 + MPMX19_04801 0.14 +0.5 202,206 + MPMX19_04801 0.14 +0.1 202,206 + MPMX19_04801 0.14 +0.3 202,206 + MPMX19_04801 0.14 +0.5 202,207 - MPMX19_04801 0.14 +0.9 202,207 - MPMX19_04801 0.14 -0.7 202,207 - MPMX19_04801 0.14 -1.2 202,207 - MPMX19_04801 0.14 -1.2 202,207 - MPMX19_04801 0.14 -0.2 202,207 - MPMX19_04801 0.14 +1.3 202,207 - MPMX19_04801 0.14 -1.2 202,207 - MPMX19_04801 0.14 +1.3 202,278 + MPMX19_04801 0.20 +0.2 202,437 + MPMX19_04801 0.33 +0.5 202,437 + MPMX19_04801 0.33 -0.6 202,437 + MPMX19_04801 0.33 -0.0 202,437 + MPMX19_04801 0.33 -0.5 202,437 + MPMX19_04801 0.33 -0.2 202,437 + MPMX19_04801 0.33 -0.2 202,438 - MPMX19_04801 0.34 +0.7 202,479 + MPMX19_04801 0.37 +0.1 202,551 + MPMX19_04801 0.43 +0.6 202,551 + MPMX19_04801 0.43 +0.8 202,551 + MPMX19_04801 0.43 +1.4 202,552 - MPMX19_04801 0.43 -0.2 202,552 - MPMX19_04801 0.43 -1.9 202,552 - MPMX19_04801 0.43 +0.5 202,552 - MPMX19_04801 0.43 -0.5 202,552 - MPMX19_04801 0.43 -0.1 202,552 - MPMX19_04801 0.43 -1.1 202,552 - MPMX19_04801 0.43 -1.6 202,552 - MPMX19_04801 0.43 -1.0 202,552 - MPMX19_04801 0.43 +1.3 202,553 + MPMX19_04801 0.43 +0.3 202,553 + MPMX19_04801 0.43 +0.6 202,553 + MPMX19_04801 0.43 -2.5 202,554 - MPMX19_04801 0.43 +1.2 202,554 - MPMX19_04801 0.43 -0.2
Or see this region's nucleotide sequence