Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04798 and MPMX19_04799 are separated by 279 nucleotides MPMX19_04799 and MPMX19_04800 are separated by 3 nucleotides MPMX19_04800 and MPMX19_04801 are separated by 325 nucleotides
MPMX19_04798: MPMX19_04798 - hypothetical protein, at 198,389 to 199,729
_04798
MPMX19_04799: MPMX19_04799 - D-inositol-3-phosphate glycosyltransferase, at 200,009 to 201,121
_04799
MPMX19_04800: MPMX19_04800 - hypothetical protein, at 201,125 to 201,718
_04800
MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219
_04801
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 199.065 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.099 kb on - strand, within MPMX19_04798 at 199.099 kb on - strand, within MPMX19_04798 at 199.099 kb on - strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.258 kb on - strand, within MPMX19_04798 at 199.276 kb on + strand, within MPMX19_04798 at 199.276 kb on + strand, within MPMX19_04798 at 199.276 kb on + strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.435 kb on - strand, within MPMX19_04798 at 199.435 kb on - strand, within MPMX19_04798 at 199.438 kb on + strand, within MPMX19_04798 at 199.439 kb on - strand, within MPMX19_04798 at 199.439 kb on - strand, within MPMX19_04798 at 199.451 kb on + strand, within MPMX19_04798 at 199.515 kb on + strand, within MPMX19_04798 at 199.515 kb on + strand, within MPMX19_04798 at 199.516 kb on - strand, within MPMX19_04798 at 199.516 kb on - strand, within MPMX19_04798 at 199.725 kb on + strand at 199.725 kb on + strand at 199.725 kb on + strand at 199.725 kb on + strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.733 kb on - strand at 199.763 kb on + strand at 199.795 kb on - strand at 200.031 kb on + strand at 200.031 kb on + strand at 200.032 kb on - strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.044 kb on - strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.078 kb on - strand at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.973 kb on - strand, within MPMX19_04799 at 201.027 kb on + strand at 201.028 kb on - strand at 201.129 kb on + strand at 201.129 kb on + strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.143 kb on + strand at 201.144 kb on - strand at 201.144 kb on - strand at 201.192 kb on + strand, within MPMX19_04800 at 201.192 kb on + strand, within MPMX19_04800 at 201.252 kb on + strand, within MPMX19_04800 at 201.253 kb on - strand, within MPMX19_04800 at 201.258 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.306 kb on + strand, within MPMX19_04800 at 201.307 kb on - strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.431 kb on - strand, within MPMX19_04800 at 201.704 kb on + strand at 201.704 kb on + strand at 201.705 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.809 kb on + strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.900 kb on - strand at 201.931 kb on + strand at 201.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 199,065 + MPMX19_04798 0.50 -0.5 199,098 + MPMX19_04798 0.53 +0.3 199,098 + MPMX19_04798 0.53 +0.8 199,098 + MPMX19_04798 0.53 -1.4 199,098 + MPMX19_04798 0.53 +0.1 199,098 + MPMX19_04798 0.53 -1.2 199,098 + MPMX19_04798 0.53 +0.7 199,098 + MPMX19_04798 0.53 -0.2 199,099 - MPMX19_04798 0.53 -1.9 199,099 - MPMX19_04798 0.53 +0.5 199,099 - MPMX19_04798 0.53 -0.1 199,143 + MPMX19_04798 0.56 +0.3 199,143 + MPMX19_04798 0.56 +0.6 199,143 + MPMX19_04798 0.56 -1.2 199,143 + MPMX19_04798 0.56 +0.4 199,143 + MPMX19_04798 0.56 -1.8 199,143 + MPMX19_04798 0.56 -0.2 199,143 + MPMX19_04798 0.56 -0.8 199,143 + MPMX19_04798 0.56 -2.2 199,143 + MPMX19_04798 0.56 -1.3 199,143 + MPMX19_04798 0.56 +1.2 199,143 + MPMX19_04798 0.56 +1.7 199,143 + MPMX19_04798 0.56 -0.1 199,143 + MPMX19_04798 0.56 -0.2 199,143 + MPMX19_04798 0.56 +3.1 199,143 - MPMX19_04798 0.56 +0.8 199,144 - MPMX19_04798 0.56 -1.6 199,144 - MPMX19_04798 0.56 -0.4 199,144 - MPMX19_04798 0.56 +1.1 199,144 - MPMX19_04798 0.56 -1.2 199,144 - MPMX19_04798 0.56 +0.8 199,144 - MPMX19_04798 0.56 -1.9 199,144 - MPMX19_04798 0.56 +0.1 199,144 - MPMX19_04798 0.56 +0.1 199,144 - MPMX19_04798 0.56 -0.4 199,144 - MPMX19_04798 0.56 -0.1 199,144 - MPMX19_04798 0.56 -0.8 199,144 - MPMX19_04798 0.56 -0.7 199,144 - MPMX19_04798 0.56 +0.5 199,144 - MPMX19_04798 0.56 -1.9 199,144 - MPMX19_04798 0.56 -1.2 199,144 - MPMX19_04798 0.56 -0.7 199,144 - MPMX19_04798 0.56 -2.0 199,203 + MPMX19_04798 0.61 +0.8 199,203 + MPMX19_04798 0.61 +1.8 199,203 + MPMX19_04798 0.61 -0.2 199,203 + MPMX19_04798 0.61 -1.1 199,203 + MPMX19_04798 0.61 -1.2 199,203 + MPMX19_04798 0.61 -0.8 199,203 + MPMX19_04798 0.61 -0.4 199,203 + MPMX19_04798 0.61 -0.1 199,204 - MPMX19_04798 0.61 +0.3 199,204 - MPMX19_04798 0.61 -1.2 199,204 - MPMX19_04798 0.61 -0.2 199,204 - MPMX19_04798 0.61 -1.9 199,258 - MPMX19_04798 0.65 -0.2 199,276 + MPMX19_04798 0.66 -1.9 199,276 + MPMX19_04798 0.66 -0.4 199,276 + MPMX19_04798 0.66 +1.3 199,277 - MPMX19_04798 0.66 -0.8 199,277 - MPMX19_04798 0.66 +0.9 199,277 - MPMX19_04798 0.66 -1.1 199,277 - MPMX19_04798 0.66 +1.1 199,435 - MPMX19_04798 0.78 -1.1 199,435 - MPMX19_04798 0.78 +0.1 199,438 + MPMX19_04798 0.78 -1.1 199,439 - MPMX19_04798 0.78 -0.3 199,439 - MPMX19_04798 0.78 -0.2 199,451 + MPMX19_04798 0.79 +0.6 199,515 + MPMX19_04798 0.84 -1.2 199,515 + MPMX19_04798 0.84 -0.7 199,516 - MPMX19_04798 0.84 -1.1 199,516 - MPMX19_04798 0.84 +0.1 199,725 + -0.7 199,725 + -0.5 199,725 + -1.2 199,725 + -0.5 199,726 - -1.4 199,726 - -0.5 199,726 - -0.4 199,726 - +0.2 199,726 - -0.7 199,726 - -2.2 199,733 - -0.1 199,763 + -1.2 199,795 - -0.9 200,031 + +0.2 200,031 + -1.9 200,032 - +0.1 200,043 + -0.7 200,043 + -0.7 200,043 + -0.1 200,043 + -0.5 200,043 + -1.8 200,044 - -1.2 200,077 + +0.9 200,077 + -0.9 200,077 + -1.4 200,077 + -0.4 200,078 - -1.3 200,508 + MPMX19_04799 0.45 +0.5 200,508 + MPMX19_04799 0.45 -0.2 200,508 + MPMX19_04799 0.45 -1.3 200,508 + MPMX19_04799 0.45 -0.7 200,509 - MPMX19_04799 0.45 -0.4 200,509 - MPMX19_04799 0.45 -0.5 200,509 - MPMX19_04799 0.45 -0.9 200,838 + MPMX19_04799 0.74 +1.5 200,838 + MPMX19_04799 0.74 -1.9 200,838 + MPMX19_04799 0.74 -0.2 200,838 + MPMX19_04799 0.74 +0.1 200,838 + MPMX19_04799 0.74 +0.5 200,838 + MPMX19_04799 0.74 -0.5 200,838 + MPMX19_04799 0.74 +1.1 200,839 - MPMX19_04799 0.75 -1.2 200,839 - MPMX19_04799 0.75 -0.1 200,839 - MPMX19_04799 0.75 -0.0 200,839 - MPMX19_04799 0.75 -0.8 200,839 - MPMX19_04799 0.75 -0.9 200,839 - MPMX19_04799 0.75 -1.7 200,839 - MPMX19_04799 0.75 +0.5 200,920 - MPMX19_04799 0.82 -0.5 200,920 - MPMX19_04799 0.82 -0.1 200,972 + MPMX19_04799 0.87 -0.7 200,972 + MPMX19_04799 0.87 -1.6 200,973 - MPMX19_04799 0.87 -1.5 201,027 + -1.1 201,028 - -1.5 201,129 + -0.5 201,129 + +1.1 201,130 - +0.3 201,130 - -1.8 201,130 - -0.4 201,143 + -1.2 201,144 - +0.3 201,144 - -0.5 201,192 + MPMX19_04800 0.11 +1.3 201,192 + MPMX19_04800 0.11 -1.7 201,252 + MPMX19_04800 0.21 -0.1 201,253 - MPMX19_04800 0.22 -0.0 201,258 + MPMX19_04800 0.22 +0.1 201,304 + MPMX19_04800 0.30 -1.1 201,304 + MPMX19_04800 0.30 -0.7 201,304 + MPMX19_04800 0.30 -2.1 201,305 - MPMX19_04800 0.30 +0.2 201,305 - MPMX19_04800 0.30 +0.9 201,305 - MPMX19_04800 0.30 +1.7 201,305 - MPMX19_04800 0.30 -0.1 201,306 + MPMX19_04800 0.30 -0.2 201,307 - MPMX19_04800 0.31 -0.2 201,345 + MPMX19_04800 0.37 +0.1 201,345 + MPMX19_04800 0.37 -0.3 201,345 + MPMX19_04800 0.37 -0.9 201,345 + MPMX19_04800 0.37 -2.1 201,345 + MPMX19_04800 0.37 +0.5 201,345 + MPMX19_04800 0.37 +0.8 201,345 + MPMX19_04800 0.37 +0.1 201,345 + MPMX19_04800 0.37 -2.2 201,345 + MPMX19_04800 0.37 -0.2 201,346 - MPMX19_04800 0.37 -1.1 201,346 - MPMX19_04800 0.37 -0.2 201,346 - MPMX19_04800 0.37 +1.1 201,346 - MPMX19_04800 0.37 +0.2 201,346 - MPMX19_04800 0.37 -0.5 201,346 - MPMX19_04800 0.37 +0.5 201,346 - MPMX19_04800 0.37 +0.6 201,346 - MPMX19_04800 0.37 -0.2 201,346 - MPMX19_04800 0.37 +0.1 201,346 - MPMX19_04800 0.37 +0.3 201,346 - MPMX19_04800 0.37 -0.4 201,346 - MPMX19_04800 0.37 -0.4 201,346 - MPMX19_04800 0.37 +1.1 201,431 - MPMX19_04800 0.52 +2.7 201,704 + -1.7 201,704 + -0.5 201,705 - +0.9 201,757 - -0.5 201,757 - -0.7 201,757 - -0.9 201,809 + +1.8 201,810 - -0.1 201,810 - -0.7 201,872 + -1.8 201,872 + -0.9 201,872 + -0.6 201,873 - -0.8 201,873 - +0.2 201,873 - -0.7 201,873 - -0.6 201,873 - +0.1 201,873 - +0.5 201,873 - -1.7 201,873 - +0.1 201,873 - +1.1 201,876 + -0.5 201,876 + +0.1 201,876 + -1.1 201,876 + -0.9 201,876 + -0.8 201,876 + -0.3 201,876 + -0.9 201,876 + -1.5 201,876 + -2.1 201,876 + -0.3 201,876 + -1.2 201,876 + -2.9 201,876 + -0.3 201,876 + +0.5 201,876 + -0.4 201,876 + -2.0 201,876 + -2.1 201,877 - +0.5 201,877 - -1.9 201,877 - -1.1 201,877 - -0.1 201,877 - -2.4 201,877 - +2.7 201,877 - -2.2 201,877 - -0.9 201,877 - -1.7 201,877 - +0.8 201,900 - +0.3 201,931 + -0.5 201,931 + +0.5
Or see this region's nucleotide sequence