Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04794 and MPMX19_04795 are separated by 20 nucleotides MPMX19_04795 and MPMX19_04796 are separated by 4 nucleotides
MPMX19_04794: MPMX19_04794 - hypothetical protein, at 192,571 to 193,977
_04794
MPMX19_04795: MPMX19_04795 - hypothetical protein, at 193,998 to 194,675
_04795
MPMX19_04796: MPMX19_04796 - hypothetical protein, at 194,680 to 196,947
_04796
Position (kb) 193
194
195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.019 kb on + strand, within MPMX19_04794 at 193.020 kb on - strand, within MPMX19_04794 at 193.020 kb on - strand, within MPMX19_04794 at 193.020 kb on - strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.142 kb on + strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.143 kb on - strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.183 kb on + strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.184 kb on - strand, within MPMX19_04794 at 193.185 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.348 kb on + strand, within MPMX19_04794 at 193.349 kb on - strand, within MPMX19_04794 at 193.349 kb on - strand, within MPMX19_04794 at 193.349 kb on - strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.427 kb on + strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.428 kb on - strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.578 kb on + strand, within MPMX19_04794 at 193.579 kb on - strand, within MPMX19_04794 at 193.579 kb on - strand, within MPMX19_04794 at 193.579 kb on - strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.580 kb on + strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.581 kb on - strand, within MPMX19_04794 at 193.602 kb on - strand, within MPMX19_04794 at 193.616 kb on + strand, within MPMX19_04794 at 193.616 kb on + strand, within MPMX19_04794 at 193.616 kb on + strand, within MPMX19_04794 at 193.617 kb on - strand, within MPMX19_04794 at 193.617 kb on - strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.794 kb on + strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.795 kb on - strand, within MPMX19_04794 at 193.796 kb on + strand, within MPMX19_04794 at 193.797 kb on - strand, within MPMX19_04794 at 193.797 kb on - strand, within MPMX19_04794 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.182 kb on + strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.183 kb on - strand, within MPMX19_04795 at 194.640 kb on + strand at 194.681 kb on + strand at 194.681 kb on + strand at 194.682 kb on - strand at 194.682 kb on - strand at 194.690 kb on + strand at 194.690 kb on + strand at 194.691 kb on - strand at 194.691 kb on - strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.693 kb on + strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.694 kb on - strand at 194.711 kb on + strand at 194.711 kb on + strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.712 kb on - strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.714 kb on + strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.715 kb on - strand at 194.717 kb on + strand at 194.717 kb on + strand at 194.717 kb on + strand at 194.718 kb on - strand at 194.718 kb on - strand at 194.718 kb on - strand at 194.738 kb on + strand at 194.738 kb on + strand at 194.738 kb on + strand at 194.738 kb on + strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.739 kb on - strand at 194.755 kb on + strand at 194.755 kb on + strand at 194.755 kb on + strand at 194.756 kb on - strand at 194.756 kb on - strand at 194.948 kb on + strand, within MPMX19_04796 at 195.341 kb on + strand, within MPMX19_04796 at 195.341 kb on + strand, within MPMX19_04796 at 195.368 kb on + strand, within MPMX19_04796 at 195.368 kb on + strand, within MPMX19_04796 at 195.368 kb on + strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.369 kb on - strand, within MPMX19_04796 at 195.663 kb on - strand, within MPMX19_04796
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 193,019 + MPMX19_04794 0.32 -1.3 193,019 + MPMX19_04794 0.32 -0.0 193,019 + MPMX19_04794 0.32 -0.6 193,019 + MPMX19_04794 0.32 -0.3 193,019 + MPMX19_04794 0.32 +0.3 193,019 + MPMX19_04794 0.32 -0.7 193,020 - MPMX19_04794 0.32 -1.2 193,020 - MPMX19_04794 0.32 -1.2 193,020 - MPMX19_04794 0.32 -0.2 193,142 + MPMX19_04794 0.41 -1.4 193,142 + MPMX19_04794 0.41 -0.6 193,142 + MPMX19_04794 0.41 -0.1 193,142 + MPMX19_04794 0.41 -0.1 193,142 + MPMX19_04794 0.41 +0.5 193,142 + MPMX19_04794 0.41 -0.7 193,143 - MPMX19_04794 0.41 +1.1 193,143 - MPMX19_04794 0.41 -0.1 193,143 - MPMX19_04794 0.41 -1.6 193,143 - MPMX19_04794 0.41 -1.2 193,183 + MPMX19_04794 0.43 -0.3 193,183 + MPMX19_04794 0.43 +0.1 193,183 + MPMX19_04794 0.43 -3.8 193,183 + MPMX19_04794 0.43 +0.6 193,184 - MPMX19_04794 0.44 +0.5 193,184 - MPMX19_04794 0.44 -1.2 193,184 - MPMX19_04794 0.44 -0.4 193,184 - MPMX19_04794 0.44 +0.5 193,184 - MPMX19_04794 0.44 -0.9 193,184 - MPMX19_04794 0.44 +1.4 193,184 - MPMX19_04794 0.44 -0.5 193,184 - MPMX19_04794 0.44 -1.5 193,185 + MPMX19_04794 0.44 -1.2 193,348 + MPMX19_04794 0.55 +1.3 193,348 + MPMX19_04794 0.55 -0.6 193,348 + MPMX19_04794 0.55 -0.6 193,348 + MPMX19_04794 0.55 +0.3 193,349 - MPMX19_04794 0.55 -0.1 193,349 - MPMX19_04794 0.55 -0.9 193,349 - MPMX19_04794 0.55 -1.2 193,427 + MPMX19_04794 0.61 -0.8 193,427 + MPMX19_04794 0.61 -0.6 193,427 + MPMX19_04794 0.61 +0.7 193,427 + MPMX19_04794 0.61 -1.3 193,427 + MPMX19_04794 0.61 -1.0 193,427 + MPMX19_04794 0.61 -0.5 193,427 + MPMX19_04794 0.61 +1.4 193,427 + MPMX19_04794 0.61 -0.2 193,427 + MPMX19_04794 0.61 -1.5 193,427 + MPMX19_04794 0.61 -0.9 193,427 + MPMX19_04794 0.61 -1.4 193,427 + MPMX19_04794 0.61 -1.8 193,428 - MPMX19_04794 0.61 +0.2 193,428 - MPMX19_04794 0.61 +0.1 193,428 - MPMX19_04794 0.61 -1.5 193,428 - MPMX19_04794 0.61 -1.5 193,428 - MPMX19_04794 0.61 +0.2 193,428 - MPMX19_04794 0.61 -1.1 193,428 - MPMX19_04794 0.61 +0.5 193,428 - MPMX19_04794 0.61 -0.1 193,428 - MPMX19_04794 0.61 -1.7 193,428 - MPMX19_04794 0.61 +0.5 193,428 - MPMX19_04794 0.61 +0.9 193,428 - MPMX19_04794 0.61 -0.1 193,428 - MPMX19_04794 0.61 -2.6 193,578 + MPMX19_04794 0.72 +0.3 193,578 + MPMX19_04794 0.72 -0.5 193,578 + MPMX19_04794 0.72 -1.4 193,578 + MPMX19_04794 0.72 +0.3 193,579 - MPMX19_04794 0.72 +0.1 193,579 - MPMX19_04794 0.72 -0.7 193,579 - MPMX19_04794 0.72 -0.2 193,580 + MPMX19_04794 0.72 -0.8 193,580 + MPMX19_04794 0.72 -0.5 193,580 + MPMX19_04794 0.72 -0.2 193,580 + MPMX19_04794 0.72 -1.1 193,580 + MPMX19_04794 0.72 -0.6 193,580 + MPMX19_04794 0.72 +0.3 193,580 + MPMX19_04794 0.72 -1.1 193,580 + MPMX19_04794 0.72 +0.1 193,580 + MPMX19_04794 0.72 -1.5 193,581 - MPMX19_04794 0.72 +0.5 193,581 - MPMX19_04794 0.72 +0.3 193,581 - MPMX19_04794 0.72 +1.5 193,581 - MPMX19_04794 0.72 -2.1 193,581 - MPMX19_04794 0.72 -1.4 193,581 - MPMX19_04794 0.72 +0.4 193,581 - MPMX19_04794 0.72 -0.7 193,602 - MPMX19_04794 0.73 +0.1 193,616 + MPMX19_04794 0.74 -0.5 193,616 + MPMX19_04794 0.74 -0.8 193,616 + MPMX19_04794 0.74 +0.7 193,617 - MPMX19_04794 0.74 +1.3 193,617 - MPMX19_04794 0.74 -1.4 193,794 + MPMX19_04794 0.87 -0.8 193,794 + MPMX19_04794 0.87 +1.1 193,794 + MPMX19_04794 0.87 +0.3 193,794 + MPMX19_04794 0.87 +0.7 193,794 + MPMX19_04794 0.87 -0.7 193,794 + MPMX19_04794 0.87 -0.9 193,794 + MPMX19_04794 0.87 -1.0 193,794 + MPMX19_04794 0.87 -0.5 193,794 + MPMX19_04794 0.87 -2.9 193,794 + MPMX19_04794 0.87 -0.9 193,794 + MPMX19_04794 0.87 -0.9 193,794 + MPMX19_04794 0.87 +0.1 193,794 + MPMX19_04794 0.87 -0.1 193,794 + MPMX19_04794 0.87 -2.3 193,794 + MPMX19_04794 0.87 -0.1 193,795 - MPMX19_04794 0.87 -0.5 193,795 - MPMX19_04794 0.87 -1.5 193,795 - MPMX19_04794 0.87 -0.1 193,795 - MPMX19_04794 0.87 +0.1 193,795 - MPMX19_04794 0.87 -0.5 193,795 - MPMX19_04794 0.87 -0.2 193,795 - MPMX19_04794 0.87 -1.1 193,795 - MPMX19_04794 0.87 +0.1 193,795 - MPMX19_04794 0.87 -0.5 193,795 - MPMX19_04794 0.87 -1.4 193,796 + MPMX19_04794 0.87 -0.1 193,797 - MPMX19_04794 0.87 -0.1 193,797 - MPMX19_04794 0.87 -1.1 194,182 + MPMX19_04795 0.27 +0.1 194,182 + MPMX19_04795 0.27 -0.9 194,182 + MPMX19_04795 0.27 +1.1 194,182 + MPMX19_04795 0.27 -0.5 194,182 + MPMX19_04795 0.27 -1.1 194,182 + MPMX19_04795 0.27 -0.7 194,182 + MPMX19_04795 0.27 -0.5 194,182 + MPMX19_04795 0.27 -0.5 194,182 + MPMX19_04795 0.27 -1.1 194,182 + MPMX19_04795 0.27 -0.3 194,183 - MPMX19_04795 0.27 -1.5 194,183 - MPMX19_04795 0.27 +0.5 194,183 - MPMX19_04795 0.27 -0.5 194,183 - MPMX19_04795 0.27 -0.7 194,183 - MPMX19_04795 0.27 -0.7 194,183 - MPMX19_04795 0.27 -2.2 194,183 - MPMX19_04795 0.27 -0.9 194,183 - MPMX19_04795 0.27 -0.5 194,640 + -0.6 194,681 + -1.2 194,681 + -0.1 194,682 - -1.7 194,682 - -0.6 194,690 + -1.5 194,690 + -0.5 194,691 - -1.2 194,691 - -1.4 194,693 + -0.9 194,693 + -1.1 194,693 + +0.8 194,693 + -0.9 194,693 + -0.7 194,693 + -1.2 194,693 + +0.5 194,693 + -0.8 194,693 + -2.2 194,694 - +0.4 194,694 - -0.2 194,694 - -0.8 194,694 - +1.0 194,694 - -2.1 194,711 + +1.3 194,711 + -1.7 194,712 - -1.8 194,712 - +0.1 194,712 - -0.7 194,712 - -0.5 194,712 - -0.5 194,714 + -0.0 194,714 + -0.2 194,714 + +0.9 194,714 + +0.6 194,714 + -1.0 194,714 + +0.9 194,714 + -0.8 194,714 + +0.1 194,714 + +1.3 194,714 + -0.8 194,714 + -0.1 194,714 + -1.7 194,715 - +0.1 194,715 - -1.6 194,715 - -1.1 194,715 - -0.6 194,715 - -1.0 194,715 - +1.1 194,715 - -0.5 194,715 - -0.9 194,715 - -1.2 194,715 - -0.1 194,715 - -1.4 194,715 - -0.3 194,715 - -0.7 194,717 + -0.7 194,717 + -0.9 194,717 + -1.4 194,718 - -1.1 194,718 - -1.8 194,718 - -2.5 194,738 + +0.5 194,738 + -0.7 194,738 + +1.1 194,738 + -2.1 194,739 - +1.6 194,739 - -1.4 194,739 - -0.0 194,739 - +0.5 194,739 - -0.2 194,739 - +0.5 194,739 - -1.2 194,755 + -1.8 194,755 + +1.1 194,755 + -0.3 194,756 - +1.1 194,756 - -0.7 194,948 + MPMX19_04796 0.12 +0.7 195,341 + MPMX19_04796 0.29 -1.4 195,341 + MPMX19_04796 0.29 +0.6 195,368 + MPMX19_04796 0.30 -0.9 195,368 + MPMX19_04796 0.30 -1.4 195,368 + MPMX19_04796 0.30 +0.5 195,369 - MPMX19_04796 0.30 -0.0 195,369 - MPMX19_04796 0.30 -1.2 195,369 - MPMX19_04796 0.30 +0.1 195,369 - MPMX19_04796 0.30 +0.3 195,663 - MPMX19_04796 0.43 -1.3
Or see this region's nucleotide sequence