Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04782 and MPMX19_04783 are separated by 188 nucleotides MPMX19_04783 and MPMX19_04784 overlap by 8 nucleotides
MPMX19_04782: MPMX19_04782 - hypothetical protein, at 178,007 to 179,419
_04782
MPMX19_04783: MPMX19_04783 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 179,608 to 180,495
_04783
MPMX19_04784: MPMX19_04784 - N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, at 180,488 to 182,758
_04784
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.624 kb on - strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.827 kb on + strand, within MPMX19_04782 at 178.828 kb on - strand, within MPMX19_04782 at 178.828 kb on - strand, within MPMX19_04782 at 178.828 kb on - strand, within MPMX19_04782 at 178.828 kb on - strand, within MPMX19_04782 at 178.828 kb on - strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.836 kb on + strand, within MPMX19_04782 at 178.837 kb on - strand, within MPMX19_04782 at 178.837 kb on - strand, within MPMX19_04782 at 178.837 kb on - strand, within MPMX19_04782 at 178.837 kb on - strand, within MPMX19_04782 at 178.879 kb on - strand, within MPMX19_04782 at 178.938 kb on + strand, within MPMX19_04782 at 178.938 kb on + strand, within MPMX19_04782 at 178.939 kb on - strand, within MPMX19_04782 at 178.939 kb on - strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.947 kb on + strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 178.948 kb on - strand, within MPMX19_04782 at 179.016 kb on + strand, within MPMX19_04782 at 179.017 kb on - strand, within MPMX19_04782 at 179.040 kb on + strand, within MPMX19_04782 at 179.040 kb on + strand, within MPMX19_04782 at 179.041 kb on - strand, within MPMX19_04782 at 179.479 kb on + strand at 179.479 kb on + strand at 179.479 kb on + strand at 179.479 kb on + strand at 179.479 kb on + strand at 179.479 kb on + strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.480 kb on - strand at 179.596 kb on + strand at 179.596 kb on + strand at 179.597 kb on - strand at 179.597 kb on - strand at 179.898 kb on + strand, within MPMX19_04783 at 179.899 kb on + strand, within MPMX19_04783 at 179.899 kb on + strand, within MPMX19_04783 at 179.900 kb on - strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.088 kb on + strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.089 kb on - strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.136 kb on + strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.137 kb on - strand, within MPMX19_04783 at 180.241 kb on + strand, within MPMX19_04783 at 180.242 kb on - strand, within MPMX19_04783 at 180.242 kb on - strand, within MPMX19_04783 at 180.247 kb on + strand, within MPMX19_04783 at 180.248 kb on - strand, within MPMX19_04783 at 180.322 kb on + strand, within MPMX19_04783 at 180.322 kb on + strand, within MPMX19_04783 at 180.322 kb on + strand, within MPMX19_04783 at 180.323 kb on - strand, within MPMX19_04783 at 180.323 kb on - strand, within MPMX19_04783 at 180.323 kb on - strand, within MPMX19_04783 at 180.340 kb on + strand, within MPMX19_04783 at 180.340 kb on + strand, within MPMX19_04783 at 180.656 kb on + strand at 180.656 kb on + strand at 180.656 kb on + strand at 180.656 kb on + strand at 180.656 kb on + strand at 180.656 kb on + strand at 180.656 kb on + strand at 180.656 kb on + strand at 180.657 kb on - strand at 180.657 kb on - strand at 180.657 kb on - strand at 180.657 kb on - strand at 180.657 kb on - strand at 180.657 kb on - strand at 180.845 kb on + strand, within MPMX19_04784 at 180.845 kb on + strand, within MPMX19_04784 at 181.041 kb on + strand, within MPMX19_04784 at 181.041 kb on + strand, within MPMX19_04784 at 181.042 kb on - strand, within MPMX19_04784 at 181.042 kb on - strand, within MPMX19_04784 at 181.214 kb on + strand, within MPMX19_04784 at 181.214 kb on + strand, within MPMX19_04784 at 181.215 kb on - strand, within MPMX19_04784
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 178,624 - MPMX19_04782 0.44 +0.7 178,719 + MPMX19_04782 0.50 -1.6 178,719 + MPMX19_04782 0.50 +0.7 178,719 + MPMX19_04782 0.50 -0.3 178,719 + MPMX19_04782 0.50 -0.4 178,719 + MPMX19_04782 0.50 -0.8 178,719 + MPMX19_04782 0.50 -0.8 178,719 + MPMX19_04782 0.50 -1.4 178,720 - MPMX19_04782 0.50 -1.1 178,720 - MPMX19_04782 0.50 -1.8 178,720 - MPMX19_04782 0.50 +0.3 178,720 - MPMX19_04782 0.50 -1.3 178,720 - MPMX19_04782 0.50 -1.3 178,720 - MPMX19_04782 0.50 +0.7 178,720 - MPMX19_04782 0.50 +0.5 178,720 - MPMX19_04782 0.50 +0.5 178,720 - MPMX19_04782 0.50 -1.1 178,720 - MPMX19_04782 0.50 -1.1 178,720 - MPMX19_04782 0.50 -0.3 178,720 - MPMX19_04782 0.50 -0.1 178,827 + MPMX19_04782 0.58 -0.6 178,827 + MPMX19_04782 0.58 -0.7 178,827 + MPMX19_04782 0.58 +2.1 178,827 + MPMX19_04782 0.58 -0.8 178,827 + MPMX19_04782 0.58 +0.4 178,827 + MPMX19_04782 0.58 +0.1 178,827 + MPMX19_04782 0.58 -0.6 178,827 + MPMX19_04782 0.58 -0.6 178,827 + MPMX19_04782 0.58 +2.1 178,828 - MPMX19_04782 0.58 +0.2 178,828 - MPMX19_04782 0.58 +2.1 178,828 - MPMX19_04782 0.58 -0.2 178,828 - MPMX19_04782 0.58 +0.2 178,828 - MPMX19_04782 0.58 -1.3 178,836 + MPMX19_04782 0.59 +0.8 178,836 + MPMX19_04782 0.59 +1.1 178,836 + MPMX19_04782 0.59 +1.1 178,836 + MPMX19_04782 0.59 +0.1 178,836 + MPMX19_04782 0.59 -0.5 178,836 + MPMX19_04782 0.59 +0.5 178,836 + MPMX19_04782 0.59 -1.3 178,837 - MPMX19_04782 0.59 -0.5 178,837 - MPMX19_04782 0.59 -1.2 178,837 - MPMX19_04782 0.59 -0.0 178,837 - MPMX19_04782 0.59 -0.9 178,879 - MPMX19_04782 0.62 -1.2 178,938 + MPMX19_04782 0.66 +0.1 178,938 + MPMX19_04782 0.66 -0.7 178,939 - MPMX19_04782 0.66 -0.6 178,939 - MPMX19_04782 0.66 +0.2 178,947 + MPMX19_04782 0.67 +0.5 178,947 + MPMX19_04782 0.67 -2.1 178,947 + MPMX19_04782 0.67 -3.4 178,947 + MPMX19_04782 0.67 -1.0 178,947 + MPMX19_04782 0.67 -1.7 178,947 + MPMX19_04782 0.67 -1.6 178,947 + MPMX19_04782 0.67 -1.3 178,947 + MPMX19_04782 0.67 -0.5 178,947 + MPMX19_04782 0.67 -1.2 178,947 + MPMX19_04782 0.67 -0.7 178,947 + MPMX19_04782 0.67 +0.5 178,947 + MPMX19_04782 0.67 -0.3 178,947 + MPMX19_04782 0.67 -0.4 178,948 - MPMX19_04782 0.67 -0.3 178,948 - MPMX19_04782 0.67 -0.9 178,948 - MPMX19_04782 0.67 -1.3 178,948 - MPMX19_04782 0.67 +1.3 178,948 - MPMX19_04782 0.67 -0.1 178,948 - MPMX19_04782 0.67 -0.8 178,948 - MPMX19_04782 0.67 +0.3 178,948 - MPMX19_04782 0.67 -0.5 178,948 - MPMX19_04782 0.67 -0.3 178,948 - MPMX19_04782 0.67 +0.4 178,948 - MPMX19_04782 0.67 -0.6 178,948 - MPMX19_04782 0.67 -0.6 178,948 - MPMX19_04782 0.67 -2.7 178,948 - MPMX19_04782 0.67 +0.2 178,948 - MPMX19_04782 0.67 +0.5 178,948 - MPMX19_04782 0.67 -1.0 179,016 + MPMX19_04782 0.71 -0.1 179,017 - MPMX19_04782 0.71 +1.6 179,040 + MPMX19_04782 0.73 -1.6 179,040 + MPMX19_04782 0.73 +0.5 179,041 - MPMX19_04782 0.73 -0.8 179,479 + -0.9 179,479 + -1.3 179,479 + -0.6 179,479 + +0.1 179,479 + -1.6 179,479 + +1.7 179,480 - +1.8 179,480 - -0.2 179,480 - -1.9 179,480 - +0.2 179,480 - -0.4 179,480 - -0.3 179,480 - -1.0 179,480 - -2.2 179,480 - -0.8 179,596 + -1.1 179,596 + +0.7 179,597 - -0.2 179,597 - +0.3 179,898 + MPMX19_04783 0.33 +1.4 179,899 + MPMX19_04783 0.33 +0.5 179,899 + MPMX19_04783 0.33 -1.2 179,900 - MPMX19_04783 0.33 +0.9 180,088 + MPMX19_04783 0.54 -0.2 180,088 + MPMX19_04783 0.54 -1.1 180,088 + MPMX19_04783 0.54 +0.3 180,088 + MPMX19_04783 0.54 -0.2 180,088 + MPMX19_04783 0.54 +0.8 180,088 + MPMX19_04783 0.54 -0.4 180,088 + MPMX19_04783 0.54 +0.1 180,088 + MPMX19_04783 0.54 -2.2 180,089 - MPMX19_04783 0.54 +1.4 180,089 - MPMX19_04783 0.54 -1.1 180,089 - MPMX19_04783 0.54 +0.2 180,089 - MPMX19_04783 0.54 +0.6 180,089 - MPMX19_04783 0.54 -0.2 180,089 - MPMX19_04783 0.54 -0.1 180,089 - MPMX19_04783 0.54 -0.7 180,136 + MPMX19_04783 0.59 +0.9 180,136 + MPMX19_04783 0.59 -0.7 180,136 + MPMX19_04783 0.59 -0.0 180,136 + MPMX19_04783 0.59 -0.7 180,136 + MPMX19_04783 0.59 -1.0 180,136 + MPMX19_04783 0.59 -0.8 180,136 + MPMX19_04783 0.59 -1.0 180,136 + MPMX19_04783 0.59 -1.2 180,137 - MPMX19_04783 0.60 +0.8 180,137 - MPMX19_04783 0.60 +0.5 180,137 - MPMX19_04783 0.60 +1.5 180,137 - MPMX19_04783 0.60 -0.2 180,137 - MPMX19_04783 0.60 -0.1 180,137 - MPMX19_04783 0.60 -2.3 180,137 - MPMX19_04783 0.60 +2.1 180,137 - MPMX19_04783 0.60 +0.2 180,241 + MPMX19_04783 0.71 -0.7 180,242 - MPMX19_04783 0.71 -1.2 180,242 - MPMX19_04783 0.71 -0.4 180,247 + MPMX19_04783 0.72 +0.1 180,248 - MPMX19_04783 0.72 -1.6 180,322 + MPMX19_04783 0.80 +0.7 180,322 + MPMX19_04783 0.80 -0.4 180,322 + MPMX19_04783 0.80 -1.0 180,323 - MPMX19_04783 0.81 +0.4 180,323 - MPMX19_04783 0.81 -0.3 180,323 - MPMX19_04783 0.81 +1.1 180,340 + MPMX19_04783 0.82 -1.1 180,340 + MPMX19_04783 0.82 -1.7 180,656 + -1.7 180,656 + -1.3 180,656 + +0.8 180,656 + -0.1 180,656 + +0.5 180,656 + -0.2 180,656 + -0.7 180,656 + +0.5 180,657 - +0.1 180,657 - -0.1 180,657 - +0.8 180,657 - -0.6 180,657 - -0.0 180,657 - +0.6 180,845 + MPMX19_04784 0.16 -0.5 180,845 + MPMX19_04784 0.16 -1.4 181,041 + MPMX19_04784 0.24 -0.4 181,041 + MPMX19_04784 0.24 -1.5 181,042 - MPMX19_04784 0.24 -0.8 181,042 - MPMX19_04784 0.24 -0.6 181,214 + MPMX19_04784 0.32 -0.2 181,214 + MPMX19_04784 0.32 -0.7 181,215 - MPMX19_04784 0.32 +1.7
Or see this region's nucleotide sequence