Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04780 and MPMX19_04781 are separated by 125 nucleotides MPMX19_04781 and MPMX19_04782 are separated by 224 nucleotides
MPMX19_04780: MPMX19_04780 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 175,828 to 176,574
_04780
MPMX19_04781: MPMX19_04781 - hypothetical protein, at 176,700 to 177,782
_04781
MPMX19_04782: MPMX19_04782 - hypothetical protein, at 178,007 to 179,419
_04782
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 175.918 kb on + strand, within MPMX19_04780 at 175.918 kb on + strand, within MPMX19_04780 at 175.918 kb on + strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.943 kb on + strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.997 kb on + strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 176.132 kb on + strand, within MPMX19_04780 at 176.132 kb on + strand, within MPMX19_04780 at 176.133 kb on - strand, within MPMX19_04780 at 176.133 kb on - strand, within MPMX19_04780 at 176.267 kb on + strand, within MPMX19_04780 at 176.427 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.478 kb on + strand, within MPMX19_04780 at 176.478 kb on + strand, within MPMX19_04780 at 176.479 kb on - strand, within MPMX19_04780 at 176.479 kb on - strand, within MPMX19_04780 at 176.567 kb on + strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.968 kb on + strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.014 kb on - strand, within MPMX19_04781 at 177.014 kb on - strand, within MPMX19_04781 at 177.014 kb on - strand, within MPMX19_04781 at 177.519 kb on + strand, within MPMX19_04781 at 177.572 kb on + strand, within MPMX19_04781 at 177.740 kb on + strand at 177.740 kb on + strand at 177.849 kb on + strand at 177.850 kb on - strand at 177.857 kb on + strand at 177.901 kb on - strand at 177.941 kb on + strand at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.347 kb on + strand, within MPMX19_04782 at 178.347 kb on + strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.431 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.624 kb on - strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 175,918 + MPMX19_04780 0.12 +0.3 175,918 + MPMX19_04780 0.12 -2.3 175,918 + MPMX19_04780 0.12 +0.7 175,919 - MPMX19_04780 0.12 -0.6 175,919 - MPMX19_04780 0.12 -1.6 175,919 - MPMX19_04780 0.12 -0.5 175,919 - MPMX19_04780 0.12 +0.5 175,919 - MPMX19_04780 0.12 +0.3 175,943 + MPMX19_04780 0.15 +0.7 175,944 - MPMX19_04780 0.16 -0.3 175,944 - MPMX19_04780 0.16 -0.2 175,944 - MPMX19_04780 0.16 -1.1 175,973 + MPMX19_04780 0.19 -0.3 175,973 + MPMX19_04780 0.19 +0.6 175,973 + MPMX19_04780 0.19 -0.7 175,973 + MPMX19_04780 0.19 +0.1 175,973 + MPMX19_04780 0.19 -1.9 175,974 - MPMX19_04780 0.20 -0.5 175,974 - MPMX19_04780 0.20 -0.0 175,974 - MPMX19_04780 0.20 -0.9 175,996 + MPMX19_04780 0.22 -0.7 175,996 + MPMX19_04780 0.22 -0.9 175,996 + MPMX19_04780 0.22 -1.1 175,996 + MPMX19_04780 0.22 +0.4 175,996 + MPMX19_04780 0.22 +0.1 175,996 + MPMX19_04780 0.22 -0.7 175,996 + MPMX19_04780 0.22 +1.1 175,996 + MPMX19_04780 0.22 -1.3 175,997 + MPMX19_04780 0.23 -1.6 175,997 - MPMX19_04780 0.23 -1.9 175,997 - MPMX19_04780 0.23 -1.5 175,997 - MPMX19_04780 0.23 +0.1 175,997 - MPMX19_04780 0.23 -1.5 175,997 - MPMX19_04780 0.23 -0.9 176,132 + MPMX19_04780 0.41 +0.3 176,132 + MPMX19_04780 0.41 +1.4 176,133 - MPMX19_04780 0.41 -1.3 176,133 - MPMX19_04780 0.41 -0.3 176,267 + MPMX19_04780 0.59 +0.1 176,427 + MPMX19_04780 0.80 -1.2 176,447 + MPMX19_04780 0.83 -1.0 176,447 + MPMX19_04780 0.83 +0.4 176,447 + MPMX19_04780 0.83 +0.5 176,447 + MPMX19_04780 0.83 -0.9 176,447 + MPMX19_04780 0.83 -1.0 176,447 + MPMX19_04780 0.83 -1.5 176,447 + MPMX19_04780 0.83 -1.9 176,448 - MPMX19_04780 0.83 +0.4 176,448 - MPMX19_04780 0.83 -0.7 176,448 - MPMX19_04780 0.83 -1.1 176,448 - MPMX19_04780 0.83 -0.6 176,448 - MPMX19_04780 0.83 -1.8 176,448 - MPMX19_04780 0.83 -0.7 176,448 - MPMX19_04780 0.83 +2.1 176,448 - MPMX19_04780 0.83 -1.0 176,478 + MPMX19_04780 0.87 -1.5 176,478 + MPMX19_04780 0.87 -0.5 176,479 - MPMX19_04780 0.87 +1.1 176,479 - MPMX19_04780 0.87 +0.3 176,567 + -0.8 176,568 - +0.5 176,568 - +0.3 176,568 - -0.6 176,568 - -0.4 176,568 - -0.2 176,968 + MPMX19_04781 0.25 +0.4 176,969 - MPMX19_04781 0.25 -0.0 176,969 - MPMX19_04781 0.25 -1.8 176,969 - MPMX19_04781 0.25 +0.5 176,969 - MPMX19_04781 0.25 +0.2 176,969 - MPMX19_04781 0.25 +0.5 176,969 - MPMX19_04781 0.25 -0.5 176,969 - MPMX19_04781 0.25 -1.7 176,969 - MPMX19_04781 0.25 +0.7 176,969 - MPMX19_04781 0.25 -0.3 176,969 - MPMX19_04781 0.25 -0.7 176,969 - MPMX19_04781 0.25 -2.4 177,013 + MPMX19_04781 0.29 -0.7 177,013 + MPMX19_04781 0.29 -2.0 177,013 + MPMX19_04781 0.29 -0.7 177,013 + MPMX19_04781 0.29 -1.2 177,014 - MPMX19_04781 0.29 -1.0 177,014 - MPMX19_04781 0.29 +0.0 177,014 - MPMX19_04781 0.29 -0.1 177,519 + MPMX19_04781 0.76 +0.5 177,572 + MPMX19_04781 0.81 -1.1 177,740 + +0.6 177,740 + +0.8 177,849 + -1.3 177,850 - -1.2 177,857 + +0.1 177,901 - -0.8 177,941 + -1.9 178,226 + MPMX19_04782 0.15 +1.1 178,226 + MPMX19_04782 0.15 +0.5 178,226 + MPMX19_04782 0.15 +1.1 178,226 + MPMX19_04782 0.15 -0.4 178,226 + MPMX19_04782 0.15 +0.5 178,226 + MPMX19_04782 0.15 +0.7 178,226 + MPMX19_04782 0.15 -1.6 178,226 + MPMX19_04782 0.15 -0.6 178,226 + MPMX19_04782 0.15 -0.3 178,226 + MPMX19_04782 0.15 +0.3 178,226 + MPMX19_04782 0.15 -0.5 178,226 + MPMX19_04782 0.15 -0.7 178,226 + MPMX19_04782 0.15 -1.6 178,226 + MPMX19_04782 0.15 +0.5 178,226 + MPMX19_04782 0.15 +0.2 178,226 + MPMX19_04782 0.15 -0.5 178,226 + MPMX19_04782 0.15 -0.9 178,226 + MPMX19_04782 0.15 -0.9 178,226 + MPMX19_04782 0.15 -0.3 178,226 + MPMX19_04782 0.15 +0.1 178,227 - MPMX19_04782 0.16 -1.1 178,227 - MPMX19_04782 0.16 -0.9 178,227 - MPMX19_04782 0.16 +0.1 178,227 - MPMX19_04782 0.16 +0.7 178,227 - MPMX19_04782 0.16 -1.0 178,227 - MPMX19_04782 0.16 -0.3 178,227 - MPMX19_04782 0.16 +1.1 178,227 - MPMX19_04782 0.16 +0.3 178,227 - MPMX19_04782 0.16 -0.6 178,227 - MPMX19_04782 0.16 -0.8 178,227 - MPMX19_04782 0.16 -0.7 178,227 - MPMX19_04782 0.16 -1.4 178,227 - MPMX19_04782 0.16 -0.4 178,227 - MPMX19_04782 0.16 -0.5 178,227 - MPMX19_04782 0.16 +0.8 178,227 - MPMX19_04782 0.16 -1.3 178,227 - MPMX19_04782 0.16 -0.7 178,227 - MPMX19_04782 0.16 -0.4 178,347 + MPMX19_04782 0.24 +3.7 178,347 + MPMX19_04782 0.24 -0.4 178,348 - MPMX19_04782 0.24 -2.7 178,348 - MPMX19_04782 0.24 -0.3 178,348 - MPMX19_04782 0.24 -0.3 178,348 - MPMX19_04782 0.24 -1.6 178,431 + MPMX19_04782 0.30 +2.1 178,476 + MPMX19_04782 0.33 +0.4 178,476 + MPMX19_04782 0.33 -0.1 178,476 + MPMX19_04782 0.33 -0.0 178,476 + MPMX19_04782 0.33 -0.3 178,476 + MPMX19_04782 0.33 -0.9 178,476 + MPMX19_04782 0.33 -0.4 178,476 + MPMX19_04782 0.33 -0.7 178,476 + MPMX19_04782 0.33 -0.9 178,477 - MPMX19_04782 0.33 -1.1 178,477 - MPMX19_04782 0.33 +0.6 178,477 - MPMX19_04782 0.33 -0.8 178,477 - MPMX19_04782 0.33 -2.3 178,477 - MPMX19_04782 0.33 +0.6 178,477 - MPMX19_04782 0.33 +0.3 178,624 - MPMX19_04782 0.44 +0.7 178,719 + MPMX19_04782 0.50 -1.6 178,719 + MPMX19_04782 0.50 +0.7 178,719 + MPMX19_04782 0.50 -0.3 178,719 + MPMX19_04782 0.50 -0.4 178,719 + MPMX19_04782 0.50 -0.8 178,719 + MPMX19_04782 0.50 -0.8 178,719 + MPMX19_04782 0.50 -1.4 178,720 - MPMX19_04782 0.50 -1.1 178,720 - MPMX19_04782 0.50 -1.8 178,720 - MPMX19_04782 0.50 +0.3 178,720 - MPMX19_04782 0.50 -1.3 178,720 - MPMX19_04782 0.50 -1.3 178,720 - MPMX19_04782 0.50 +0.7 178,720 - MPMX19_04782 0.50 +0.5 178,720 - MPMX19_04782 0.50 +0.5 178,720 - MPMX19_04782 0.50 -1.1 178,720 - MPMX19_04782 0.50 -1.1 178,720 - MPMX19_04782 0.50 -0.3 178,720 - MPMX19_04782 0.50 -0.1
Or see this region's nucleotide sequence