Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04777

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04776 and MPMX19_04777 are separated by 105 nucleotidesMPMX19_04777 and MPMX19_04778 are separated by 82 nucleotides MPMX19_04776: MPMX19_04776 - Spermidine/putrescine import ATP-binding protein PotA, at 169,356 to 170,435 _04776 MPMX19_04777: MPMX19_04777 - Sensor histidine kinase RcsC, at 170,541 to 173,276 _04777 MPMX19_04778: MPMX19_04778 - hypothetical protein, at 173,359 to 174,396 _04778 Position (kb) 170 171 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.623 kb on + strand, within MPMX19_04776at 169.624 kb on - strand, within MPMX19_04776at 169.624 kb on - strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.938 kb on + strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 169.939 kb on - strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.037 kb on + strand, within MPMX19_04776at 170.038 kb on - strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.289 kb on + strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.290 kb on - strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.310 kb on + strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.311 kb on - strand, within MPMX19_04776at 170.455 kb on + strandat 170.455 kb on + strandat 170.455 kb on + strandat 170.515 kb on + strandat 170.555 kb on + strandat 170.556 kb on - strandat 171.192 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.546 kb on + strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 171.547 kb on - strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.071 kb on + strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.072 kb on - strand, within MPMX19_04777at 172.392 kb on + strand, within MPMX19_04777at 172.393 kb on - strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 173.106 kb on + strandat 173.173 kb on - strandat 173.173 kb on - strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.430 kb on - strandat 173.430 kb on - strandat 173.430 kb on - strandat 173.430 kb on - strandat 173.442 kb on + strandat 173.442 kb on + strandat 173.442 kb on + strandat 173.443 kb on - strandat 173.443 kb on - strandat 173.443 kb on - strandat 173.443 kb on - strandat 173.445 kb on - strandat 173.537 kb on + strand, within MPMX19_04778at 173.537 kb on + strand, within MPMX19_04778at 173.537 kb on + strand, within MPMX19_04778at 173.537 kb on + strand, within MPMX19_04778at 173.538 kb on - strand, within MPMX19_04778at 173.570 kb on + strand, within MPMX19_04778at 173.570 kb on + strand, within MPMX19_04778at 173.634 kb on - strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.808 kb on - strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.087 kb on - strand, within MPMX19_04778

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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169,623 + MPMX19_04776 0.25 +0.1
169,623 + MPMX19_04776 0.25 -2.6
169,623 + MPMX19_04776 0.25 -0.4
169,623 + MPMX19_04776 0.25 -0.1
169,623 + MPMX19_04776 0.25 -2.8
169,624 - MPMX19_04776 0.25 -0.4
169,624 - MPMX19_04776 0.25 -0.8
169,938 + MPMX19_04776 0.54 -0.3
169,938 + MPMX19_04776 0.54 -1.5
169,938 + MPMX19_04776 0.54 -0.1
169,938 + MPMX19_04776 0.54 -0.4
169,938 + MPMX19_04776 0.54 +0.7
169,938 + MPMX19_04776 0.54 -1.1
169,938 + MPMX19_04776 0.54 -0.5
169,938 + MPMX19_04776 0.54 -1.9
169,938 + MPMX19_04776 0.54 -0.8
169,938 + MPMX19_04776 0.54 -0.8
169,938 + MPMX19_04776 0.54 -0.8
169,938 + MPMX19_04776 0.54 -0.1
169,938 + MPMX19_04776 0.54 -0.8
169,938 + MPMX19_04776 0.54 -0.9
169,939 - MPMX19_04776 0.54 -0.3
169,939 - MPMX19_04776 0.54 -1.2
169,939 - MPMX19_04776 0.54 -0.4
169,939 - MPMX19_04776 0.54 +1.4
169,939 - MPMX19_04776 0.54 +0.3
169,939 - MPMX19_04776 0.54 -0.6
169,939 - MPMX19_04776 0.54 -0.6
170,037 + MPMX19_04776 0.63 -0.5
170,037 + MPMX19_04776 0.63 -0.7
170,037 + MPMX19_04776 0.63 -1.4
170,037 + MPMX19_04776 0.63 -1.5
170,038 - MPMX19_04776 0.63 +1.2
170,289 + MPMX19_04776 0.86 -0.9
170,289 + MPMX19_04776 0.86 -1.5
170,289 + MPMX19_04776 0.86 +0.1
170,290 - MPMX19_04776 0.86 -0.6
170,290 - MPMX19_04776 0.86 -0.8
170,290 - MPMX19_04776 0.86 +0.1
170,290 - MPMX19_04776 0.86 +0.2
170,290 - MPMX19_04776 0.86 -0.3
170,290 - MPMX19_04776 0.86 -0.6
170,290 - MPMX19_04776 0.86 -1.3
170,310 + MPMX19_04776 0.88 -0.9
170,310 + MPMX19_04776 0.88 -1.9
170,310 + MPMX19_04776 0.88 -1.2
170,310 + MPMX19_04776 0.88 +0.1
170,310 + MPMX19_04776 0.88 -2.2
170,310 + MPMX19_04776 0.88 -2.1
170,310 + MPMX19_04776 0.88 -1.2
170,311 - MPMX19_04776 0.88 -2.4
170,311 - MPMX19_04776 0.88 +1.3
170,311 - MPMX19_04776 0.88 +0.9
170,311 - MPMX19_04776 0.88 -0.9
170,311 - MPMX19_04776 0.88 -0.3
170,311 - MPMX19_04776 0.88 +0.5
170,455 + -1.3
170,455 + -1.0
170,455 + -0.7
170,515 + +1.5
170,555 + -1.0
170,556 - +0.2
171,192 + MPMX19_04777 0.24 -0.0
171,546 + MPMX19_04777 0.37 -2.1
171,546 + MPMX19_04777 0.37 +1.1
171,546 + MPMX19_04777 0.37 +0.1
171,546 + MPMX19_04777 0.37 +0.5
171,546 + MPMX19_04777 0.37 -0.3
171,546 + MPMX19_04777 0.37 -0.9
171,546 + MPMX19_04777 0.37 +0.7
171,546 + MPMX19_04777 0.37 -1.3
171,546 + MPMX19_04777 0.37 -1.5
171,546 + MPMX19_04777 0.37 -0.9
171,546 + MPMX19_04777 0.37 -0.4
171,546 + MPMX19_04777 0.37 -0.6
171,547 - MPMX19_04777 0.37 +1.1
171,547 - MPMX19_04777 0.37 -0.6
171,547 - MPMX19_04777 0.37 -1.6
171,547 - MPMX19_04777 0.37 -0.1
171,547 - MPMX19_04777 0.37 -1.5
171,547 - MPMX19_04777 0.37 +0.6
171,547 - MPMX19_04777 0.37 -0.9
171,547 - MPMX19_04777 0.37 +0.7
171,547 - MPMX19_04777 0.37 -0.5
171,547 - MPMX19_04777 0.37 +0.6
172,071 + MPMX19_04777 0.56 -0.0
172,071 + MPMX19_04777 0.56 -1.3
172,071 + MPMX19_04777 0.56 -0.3
172,071 + MPMX19_04777 0.56 -1.9
172,071 + MPMX19_04777 0.56 -2.1
172,071 + MPMX19_04777 0.56 -0.3
172,071 + MPMX19_04777 0.56 +0.6
172,072 - MPMX19_04777 0.56 -1.2
172,072 - MPMX19_04777 0.56 +1.6
172,072 - MPMX19_04777 0.56 -0.8
172,072 - MPMX19_04777 0.56 +1.1
172,072 - MPMX19_04777 0.56 -1.4
172,072 - MPMX19_04777 0.56 +0.6
172,072 - MPMX19_04777 0.56 +0.4
172,392 + MPMX19_04777 0.68 -0.3
172,393 - MPMX19_04777 0.68 -0.1
172,713 + MPMX19_04777 0.79 -1.5
172,713 + MPMX19_04777 0.79 -1.5
172,713 + MPMX19_04777 0.79 -1.6
172,713 + MPMX19_04777 0.79 -0.3
172,713 + MPMX19_04777 0.79 -1.8
172,713 + MPMX19_04777 0.79 -0.4
172,713 + MPMX19_04777 0.79 -0.5
172,713 + MPMX19_04777 0.79 -1.3
172,713 + MPMX19_04777 0.79 -0.1
172,713 + MPMX19_04777 0.79 -0.0
172,713 + MPMX19_04777 0.79 -3.3
172,713 + MPMX19_04777 0.79 +1.1
172,714 - MPMX19_04777 0.79 +0.7
172,714 - MPMX19_04777 0.79 -0.5
172,714 - MPMX19_04777 0.79 +0.2
172,714 - MPMX19_04777 0.79 -0.5
172,714 - MPMX19_04777 0.79 +0.1
172,714 - MPMX19_04777 0.79 +2.3
172,714 - MPMX19_04777 0.79 -0.3
172,714 - MPMX19_04777 0.79 -0.6
172,714 - MPMX19_04777 0.79 -1.6
172,714 - MPMX19_04777 0.79 -0.6
173,106 + -1.6
173,173 - -0.0
173,173 - -1.5
173,429 + -0.7
173,429 + -1.1
173,429 + -1.0
173,429 + -0.3
173,429 + +1.1
173,430 - -2.0
173,430 - +0.2
173,430 - -0.4
173,430 - +0.2
173,442 + -0.6
173,442 + -0.1
173,442 + +0.1
173,443 - -1.3
173,443 - -1.6
173,443 - -0.8
173,443 - -1.2
173,445 - -0.1
173,537 + MPMX19_04778 0.17 -0.1
173,537 + MPMX19_04778 0.17 +0.8
173,537 + MPMX19_04778 0.17 -0.3
173,537 + MPMX19_04778 0.17 -1.4
173,538 - MPMX19_04778 0.17 -1.3
173,570 + MPMX19_04778 0.20 +0.1
173,570 + MPMX19_04778 0.20 -0.9
173,634 - MPMX19_04778 0.26 -1.0
173,774 + MPMX19_04778 0.40 -0.9
173,774 + MPMX19_04778 0.40 -0.2
173,774 + MPMX19_04778 0.40 -1.8
173,774 + MPMX19_04778 0.40 -0.9
173,774 + MPMX19_04778 0.40 -0.5
173,774 + MPMX19_04778 0.40 -0.9
173,774 + MPMX19_04778 0.40 -0.3
173,774 + MPMX19_04778 0.40 -1.1
173,774 + MPMX19_04778 0.40 +0.5
173,775 - MPMX19_04778 0.40 -0.8
173,775 - MPMX19_04778 0.40 -0.0
173,775 - MPMX19_04778 0.40 -0.5
173,775 - MPMX19_04778 0.40 -0.1
173,808 - MPMX19_04778 0.43 -0.8
173,861 + MPMX19_04778 0.48 -0.5
173,861 + MPMX19_04778 0.48 +0.2
173,861 + MPMX19_04778 0.48 +0.1
173,861 + MPMX19_04778 0.48 -0.4
173,861 + MPMX19_04778 0.48 -1.5
173,861 + MPMX19_04778 0.48 +0.1
173,862 - MPMX19_04778 0.48 -1.9
173,862 - MPMX19_04778 0.48 +0.2
173,862 - MPMX19_04778 0.48 -0.1
173,862 - MPMX19_04778 0.48 -1.1
173,862 - MPMX19_04778 0.48 -1.4
173,862 - MPMX19_04778 0.48 -1.8
173,862 - MPMX19_04778 0.48 +0.3
173,862 - MPMX19_04778 0.48 -0.6
173,862 - MPMX19_04778 0.48 -0.9
173,862 - MPMX19_04778 0.48 +0.2
173,982 - MPMX19_04778 0.60 +0.7
173,982 - MPMX19_04778 0.60 -1.3
173,982 - MPMX19_04778 0.60 -2.7
174,006 - MPMX19_04778 0.62 +0.2
174,006 - MPMX19_04778 0.62 -2.5
174,006 - MPMX19_04778 0.62 -1.5
174,006 - MPMX19_04778 0.62 -1.4
174,006 - MPMX19_04778 0.62 -1.6
174,006 - MPMX19_04778 0.62 +0.3
174,006 - MPMX19_04778 0.62 +0.9
174,006 - MPMX19_04778 0.62 +0.5
174,006 - MPMX19_04778 0.62 -1.1
174,006 - MPMX19_04778 0.62 -1.9
174,018 + MPMX19_04778 0.63 +2.1
174,018 + MPMX19_04778 0.63 -0.8
174,018 + MPMX19_04778 0.63 +0.3
174,018 + MPMX19_04778 0.63 +0.4
174,018 + MPMX19_04778 0.63 -1.0
174,018 + MPMX19_04778 0.63 -1.6
174,018 + MPMX19_04778 0.63 -0.3
174,018 + MPMX19_04778 0.63 -0.7
174,018 + MPMX19_04778 0.63 -0.1
174,018 + MPMX19_04778 0.63 -1.3
174,018 + MPMX19_04778 0.63 +0.2
174,038 + MPMX19_04778 0.65 -0.9
174,038 + MPMX19_04778 0.65 -0.1
174,038 + MPMX19_04778 0.65 -0.9
174,038 + MPMX19_04778 0.65 +1.3
174,039 - MPMX19_04778 0.66 +1.1
174,039 - MPMX19_04778 0.66 -2.2
174,039 - MPMX19_04778 0.66 -0.1
174,039 - MPMX19_04778 0.66 +1.3
174,039 - MPMX19_04778 0.66 -0.3
174,039 - MPMX19_04778 0.66 +0.1
174,039 - MPMX19_04778 0.66 -0.8
174,039 - MPMX19_04778 0.66 +0.7
174,087 - MPMX19_04778 0.70 +0.6

Or see this region's nucleotide sequence