Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04758

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04756 and MPMX19_04757 are separated by 1 nucleotidesMPMX19_04757 and MPMX19_04758 are separated by 104 nucleotidesMPMX19_04758 and MPMX19_04759 are separated by 192 nucleotidesMPMX19_04759 and MPMX19_04760 are separated by 9 nucleotides MPMX19_04756: MPMX19_04756 - Glutamine transport ATP-binding protein GlnQ, at 147,537 to 148,346 _04756 MPMX19_04757: MPMX19_04757 - L-cystine transport system permease protein YecS, at 148,348 to 149,019 _04757 MPMX19_04758: MPMX19_04758 - Glutamine-binding periplasmic protein, at 149,124 to 149,924 _04758 MPMX19_04759: MPMX19_04759 - HTH-type transcriptional regulator LutR, at 150,117 to 150,836 _04759 MPMX19_04760: MPMX19_04760 - Sialic acid TRAP transporter large permease protein SiaM, at 150,846 to 152,126 _04760 Position (kb) 149 150Strain fitness (log2 ratio) -2 -1 0 1 2at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.231 kb on + strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.232 kb on - strand, within MPMX19_04756at 148.316 kb on + strandat 148.331 kb on + strandat 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.421 kb on + strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.422 kb on - strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.619 kb on + strand, within MPMX19_04757at 148.620 kb on - strand, within MPMX19_04757at 148.620 kb on - strand, within MPMX19_04757at 148.700 kb on + strand, within MPMX19_04757at 148.700 kb on + strand, within MPMX19_04757at 148.701 kb on - strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.778 kb on + strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.779 kb on - strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.781 kb on + strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.782 kb on - strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.832 kb on + strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.833 kb on - strand, within MPMX19_04757at 148.868 kb on + strand, within MPMX19_04757at 148.868 kb on + strand, within MPMX19_04757at 149.020 kb on - strandat 149.020 kb on - strandat 149.293 kb on + strand, within MPMX19_04758at 149.293 kb on + strand, within MPMX19_04758at 149.294 kb on - strand, within MPMX19_04758at 149.350 kb on + strand, within MPMX19_04758at 149.350 kb on + strand, within MPMX19_04758at 149.350 kb on + strand, within MPMX19_04758at 149.351 kb on - strand, within MPMX19_04758at 149.351 kb on - strand, within MPMX19_04758at 149.351 kb on - strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.353 kb on + strand, within MPMX19_04758at 149.354 kb on - strand, within MPMX19_04758at 149.354 kb on - strand, within MPMX19_04758at 149.354 kb on - strand, within MPMX19_04758at 149.354 kb on - strand, within MPMX19_04758at 149.354 kb on - strand, within MPMX19_04758at 149.380 kb on + strand, within MPMX19_04758at 149.380 kb on + strand, within MPMX19_04758at 149.380 kb on + strand, within MPMX19_04758at 149.381 kb on - strand, within MPMX19_04758at 149.381 kb on - strand, within MPMX19_04758at 149.381 kb on - strand, within MPMX19_04758at 149.381 kb on - strand, within MPMX19_04758at 149.381 kb on - strand, within MPMX19_04758at 149.458 kb on + strand, within MPMX19_04758at 149.458 kb on + strand, within MPMX19_04758at 149.458 kb on + strand, within MPMX19_04758at 149.458 kb on + strand, within MPMX19_04758at 149.458 kb on + strand, within MPMX19_04758at 149.459 kb on - strand, within MPMX19_04758at 149.459 kb on - strand, within MPMX19_04758at 149.459 kb on - strand, within MPMX19_04758at 149.459 kb on - strand, within MPMX19_04758at 149.459 kb on - strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.590 kb on + strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.591 kb on - strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.593 kb on + strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.594 kb on - strand, within MPMX19_04758at 149.930 kb on + strandat 149.930 kb on + strandat 149.930 kb on + strandat 149.931 kb on - strandat 149.931 kb on - strandat 150.056 kb on + strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.057 kb on - strandat 150.378 kb on + strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.379 kb on - strand, within MPMX19_04759at 150.396 kb on + strand, within MPMX19_04759at 150.397 kb on - strand, within MPMX19_04759at 150.700 kb on + strand, within MPMX19_04759at 150.700 kb on + strand, within MPMX19_04759at 150.701 kb on - strand, within MPMX19_04759at 150.834 kb on + strandat 150.834 kb on + strandat 150.834 kb on + strandat 150.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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148,231 + MPMX19_04756 0.86 -0.4
148,231 + MPMX19_04756 0.86 -0.5
148,231 + MPMX19_04756 0.86 -1.3
148,231 + MPMX19_04756 0.86 -0.3
148,231 + MPMX19_04756 0.86 -0.4
148,231 + MPMX19_04756 0.86 -0.2
148,231 + MPMX19_04756 0.86 -0.9
148,231 + MPMX19_04756 0.86 -0.3
148,231 + MPMX19_04756 0.86 -0.1
148,231 + MPMX19_04756 0.86 -0.7
148,231 + MPMX19_04756 0.86 -2.0
148,231 + MPMX19_04756 0.86 +0.2
148,231 + MPMX19_04756 0.86 +0.5
148,231 + MPMX19_04756 0.86 -0.4
148,231 + MPMX19_04756 0.86 -0.1
148,231 + MPMX19_04756 0.86 -0.6
148,231 + MPMX19_04756 0.86 -0.7
148,232 - MPMX19_04756 0.86 -0.7
148,232 - MPMX19_04756 0.86 +0.3
148,232 - MPMX19_04756 0.86 -0.7
148,232 - MPMX19_04756 0.86 -0.2
148,232 - MPMX19_04756 0.86 -1.1
148,232 - MPMX19_04756 0.86 +0.3
148,232 - MPMX19_04756 0.86 -0.3
148,232 - MPMX19_04756 0.86 +1.1
148,232 - MPMX19_04756 0.86 -2.0
148,232 - MPMX19_04756 0.86 -1.8
148,232 - MPMX19_04756 0.86 -0.8
148,232 - MPMX19_04756 0.86 -0.4
148,232 - MPMX19_04756 0.86 -1.5
148,232 - MPMX19_04756 0.86 -0.5
148,232 - MPMX19_04756 0.86 -1.4
148,316 + -1.3
148,331 + -1.0
148,421 + MPMX19_04757 0.11 +0.1
148,421 + MPMX19_04757 0.11 -1.0
148,421 + MPMX19_04757 0.11 -1.6
148,421 + MPMX19_04757 0.11 -0.6
148,421 + MPMX19_04757 0.11 +1.1
148,421 + MPMX19_04757 0.11 +0.6
148,421 + MPMX19_04757 0.11 -1.9
148,421 + MPMX19_04757 0.11 +2.1
148,421 + MPMX19_04757 0.11 -1.6
148,421 + MPMX19_04757 0.11 -1.3
148,421 + MPMX19_04757 0.11 -0.3
148,421 + MPMX19_04757 0.11 -0.3
148,421 + MPMX19_04757 0.11 +0.2
148,421 + MPMX19_04757 0.11 -0.4
148,422 - MPMX19_04757 0.11 +0.2
148,422 - MPMX19_04757 0.11 +0.1
148,422 - MPMX19_04757 0.11 -0.3
148,422 - MPMX19_04757 0.11 +0.6
148,422 - MPMX19_04757 0.11 -2.0
148,422 - MPMX19_04757 0.11 +1.4
148,422 - MPMX19_04757 0.11 -0.4
148,422 - MPMX19_04757 0.11 -0.9
148,422 - MPMX19_04757 0.11 -1.3
148,422 - MPMX19_04757 0.11 -1.1
148,422 - MPMX19_04757 0.11 -1.8
148,422 - MPMX19_04757 0.11 -1.8
148,422 - MPMX19_04757 0.11 -0.2
148,619 + MPMX19_04757 0.40 -0.3
148,619 + MPMX19_04757 0.40 -2.0
148,619 + MPMX19_04757 0.40 +0.5
148,619 + MPMX19_04757 0.40 -1.5
148,620 - MPMX19_04757 0.40 -1.7
148,620 - MPMX19_04757 0.40 +0.2
148,700 + MPMX19_04757 0.52 -0.7
148,700 + MPMX19_04757 0.52 -0.6
148,701 - MPMX19_04757 0.53 +0.7
148,778 + MPMX19_04757 0.64 +0.5
148,778 + MPMX19_04757 0.64 -1.1
148,778 + MPMX19_04757 0.64 -1.4
148,778 + MPMX19_04757 0.64 -1.6
148,778 + MPMX19_04757 0.64 +0.2
148,778 + MPMX19_04757 0.64 -2.6
148,778 + MPMX19_04757 0.64 -0.5
148,778 + MPMX19_04757 0.64 -1.6
148,779 - MPMX19_04757 0.64 +1.6
148,779 - MPMX19_04757 0.64 -1.5
148,779 - MPMX19_04757 0.64 -0.3
148,779 - MPMX19_04757 0.64 -1.4
148,779 - MPMX19_04757 0.64 -0.3
148,779 - MPMX19_04757 0.64 +1.1
148,779 - MPMX19_04757 0.64 -0.7
148,779 - MPMX19_04757 0.64 -1.3
148,779 - MPMX19_04757 0.64 +1.5
148,779 - MPMX19_04757 0.64 -0.6
148,781 + MPMX19_04757 0.64 -0.1
148,781 + MPMX19_04757 0.64 -1.9
148,781 + MPMX19_04757 0.64 +0.5
148,781 + MPMX19_04757 0.64 +0.1
148,782 - MPMX19_04757 0.65 +0.5
148,782 - MPMX19_04757 0.65 +0.1
148,782 - MPMX19_04757 0.65 +0.0
148,782 - MPMX19_04757 0.65 -0.4
148,832 + MPMX19_04757 0.72 +0.4
148,832 + MPMX19_04757 0.72 -1.4
148,832 + MPMX19_04757 0.72 +0.1
148,832 + MPMX19_04757 0.72 +0.1
148,832 + MPMX19_04757 0.72 -0.7
148,832 + MPMX19_04757 0.72 -0.9
148,832 + MPMX19_04757 0.72 -1.3
148,832 + MPMX19_04757 0.72 -1.1
148,832 + MPMX19_04757 0.72 -0.2
148,832 + MPMX19_04757 0.72 -1.5
148,832 + MPMX19_04757 0.72 -0.4
148,832 + MPMX19_04757 0.72 +0.8
148,832 + MPMX19_04757 0.72 +0.1
148,833 - MPMX19_04757 0.72 -1.5
148,833 - MPMX19_04757 0.72 -1.8
148,833 - MPMX19_04757 0.72 +1.1
148,833 - MPMX19_04757 0.72 -0.2
148,833 - MPMX19_04757 0.72 +0.8
148,833 - MPMX19_04757 0.72 +0.8
148,833 - MPMX19_04757 0.72 -1.6
148,833 - MPMX19_04757 0.72 -0.9
148,833 - MPMX19_04757 0.72 -0.3
148,868 + MPMX19_04757 0.77 +0.5
148,868 + MPMX19_04757 0.77 -1.6
149,020 - -0.8
149,020 - -0.9
149,293 + MPMX19_04758 0.21 -0.5
149,293 + MPMX19_04758 0.21 +0.2
149,294 - MPMX19_04758 0.21 +0.7
149,350 + MPMX19_04758 0.28 -0.7
149,350 + MPMX19_04758 0.28 -0.4
149,350 + MPMX19_04758 0.28 +1.1
149,351 - MPMX19_04758 0.28 -0.9
149,351 - MPMX19_04758 0.28 -0.8
149,351 - MPMX19_04758 0.28 -0.6
149,353 + MPMX19_04758 0.29 -0.8
149,353 + MPMX19_04758 0.29 -1.4
149,353 + MPMX19_04758 0.29 +0.7
149,353 + MPMX19_04758 0.29 -0.4
149,353 + MPMX19_04758 0.29 +0.9
149,353 + MPMX19_04758 0.29 -1.3
149,353 + MPMX19_04758 0.29 -1.5
149,353 + MPMX19_04758 0.29 -0.4
149,354 - MPMX19_04758 0.29 +0.0
149,354 - MPMX19_04758 0.29 +0.0
149,354 - MPMX19_04758 0.29 +0.3
149,354 - MPMX19_04758 0.29 +2.1
149,354 - MPMX19_04758 0.29 +0.9
149,380 + MPMX19_04758 0.32 -0.1
149,380 + MPMX19_04758 0.32 +0.6
149,380 + MPMX19_04758 0.32 -0.1
149,381 - MPMX19_04758 0.32 -0.4
149,381 - MPMX19_04758 0.32 +0.2
149,381 - MPMX19_04758 0.32 +0.5
149,381 - MPMX19_04758 0.32 -0.4
149,381 - MPMX19_04758 0.32 +0.6
149,458 + MPMX19_04758 0.42 -0.5
149,458 + MPMX19_04758 0.42 -0.9
149,458 + MPMX19_04758 0.42 +0.3
149,458 + MPMX19_04758 0.42 +0.8
149,458 + MPMX19_04758 0.42 -1.1
149,459 - MPMX19_04758 0.42 +0.1
149,459 - MPMX19_04758 0.42 +0.7
149,459 - MPMX19_04758 0.42 +0.1
149,459 - MPMX19_04758 0.42 +0.1
149,459 - MPMX19_04758 0.42 +2.1
149,590 + MPMX19_04758 0.58 +0.5
149,590 + MPMX19_04758 0.58 -1.1
149,590 + MPMX19_04758 0.58 -1.0
149,590 + MPMX19_04758 0.58 -0.5
149,590 + MPMX19_04758 0.58 -0.5
149,590 + MPMX19_04758 0.58 -1.6
149,590 + MPMX19_04758 0.58 -0.4
149,591 - MPMX19_04758 0.58 +0.1
149,591 - MPMX19_04758 0.58 +0.7
149,591 - MPMX19_04758 0.58 -0.8
149,591 - MPMX19_04758 0.58 +0.2
149,591 - MPMX19_04758 0.58 -0.4
149,591 - MPMX19_04758 0.58 -0.4
149,591 - MPMX19_04758 0.58 -0.9
149,591 - MPMX19_04758 0.58 -0.3
149,591 - MPMX19_04758 0.58 -0.6
149,593 + MPMX19_04758 0.59 -0.3
149,593 + MPMX19_04758 0.59 +0.5
149,593 + MPMX19_04758 0.59 -0.1
149,593 + MPMX19_04758 0.59 +0.6
149,593 + MPMX19_04758 0.59 +0.8
149,593 + MPMX19_04758 0.59 +1.1
149,593 + MPMX19_04758 0.59 +0.9
149,594 - MPMX19_04758 0.59 +0.2
149,594 - MPMX19_04758 0.59 +1.1
149,594 - MPMX19_04758 0.59 +2.1
149,594 - MPMX19_04758 0.59 -2.4
149,594 - MPMX19_04758 0.59 -0.8
149,594 - MPMX19_04758 0.59 -1.2
149,594 - MPMX19_04758 0.59 -0.2
149,930 + -0.8
149,930 + -0.4
149,930 + +0.2
149,931 - -0.5
149,931 - -1.4
150,056 + -1.0
150,057 - -0.4
150,057 - -0.4
150,057 - +2.1
150,057 - -1.4
150,057 - +0.4
150,378 + MPMX19_04759 0.36 -0.6
150,379 - MPMX19_04759 0.36 +0.1
150,379 - MPMX19_04759 0.36 -1.4
150,379 - MPMX19_04759 0.36 -0.3
150,379 - MPMX19_04759 0.36 -1.5
150,396 + MPMX19_04759 0.39 -1.5
150,397 - MPMX19_04759 0.39 -1.8
150,700 + MPMX19_04759 0.81 -0.4
150,700 + MPMX19_04759 0.81 -0.7
150,701 - MPMX19_04759 0.81 +0.6
150,834 + -1.0
150,834 + +0.2
150,834 + +0.2
150,835 - -0.2

Or see this region's nucleotide sequence