Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04752

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04750 and MPMX19_04751 overlap by 4 nucleotidesMPMX19_04751 and MPMX19_04752 are separated by 152 nucleotidesMPMX19_04752 and MPMX19_04753 are separated by 13 nucleotides MPMX19_04750: MPMX19_04750 - hypothetical protein, at 141,481 to 142,116 _04750 MPMX19_04751: MPMX19_04751 - hypothetical protein, at 142,113 to 142,814 _04751 MPMX19_04752: MPMX19_04752 - putative transporter YycB, at 142,967 to 144,235 _04752 MPMX19_04753: MPMX19_04753 - D-hydantoinase, at 144,249 to 145,685 _04753 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.518 kb on - strand, within MPMX19_04751at 143.474 kb on + strand, within MPMX19_04752at 143.474 kb on + strand, within MPMX19_04752at 143.474 kb on + strand, within MPMX19_04752at 143.474 kb on + strand, within MPMX19_04752at 143.474 kb on + strand, within MPMX19_04752at 143.475 kb on - strand, within MPMX19_04752at 143.475 kb on - strand, within MPMX19_04752at 143.475 kb on - strand, within MPMX19_04752at 143.475 kb on - strand, within MPMX19_04752at 143.475 kb on - strand, within MPMX19_04752at 143.729 kb on + strand, within MPMX19_04752at 143.729 kb on + strand, within MPMX19_04752at 143.729 kb on + strand, within MPMX19_04752at 143.730 kb on - strand, within MPMX19_04752at 143.933 kb on + strand, within MPMX19_04752at 143.933 kb on + strand, within MPMX19_04752at 143.933 kb on + strand, within MPMX19_04752at 143.933 kb on + strand, within MPMX19_04752at 143.933 kb on + strand, within MPMX19_04752at 143.934 kb on - strand, within MPMX19_04752at 143.934 kb on - strand, within MPMX19_04752at 143.934 kb on - strand, within MPMX19_04752at 143.934 kb on - strand, within MPMX19_04752at 144.083 kb on + strand, within MPMX19_04752at 144.084 kb on - strand, within MPMX19_04752at 144.084 kb on - strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.085 kb on + strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.086 kb on - strand, within MPMX19_04752at 144.200 kb on + strandat 144.256 kb on + strandat 144.256 kb on + strandat 144.256 kb on + strandat 144.257 kb on - strandat 144.257 kb on - strandat 144.415 kb on + strand, within MPMX19_04753at 144.415 kb on + strand, within MPMX19_04753at 144.415 kb on + strand, within MPMX19_04753at 144.416 kb on - strand, within MPMX19_04753at 144.416 kb on - strand, within MPMX19_04753at 144.416 kb on - strand, within MPMX19_04753at 144.416 kb on - strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.424 kb on + strand, within MPMX19_04753at 144.425 kb on - strand, within MPMX19_04753at 144.425 kb on - strand, within MPMX19_04753at 144.425 kb on - strand, within MPMX19_04753at 144.425 kb on - strand, within MPMX19_04753at 144.541 kb on + strand, within MPMX19_04753at 144.541 kb on + strand, within MPMX19_04753at 144.541 kb on + strand, within MPMX19_04753at 144.541 kb on + strand, within MPMX19_04753at 144.541 kb on + strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.542 kb on - strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.826 kb on + strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.827 kb on - strand, within MPMX19_04753at 144.880 kb on + strand, within MPMX19_04753at 144.880 kb on + strand, within MPMX19_04753at 144.880 kb on + strand, within MPMX19_04753at 144.881 kb on - strand, within MPMX19_04753at 144.881 kb on - strand, within MPMX19_04753at 144.901 kb on + strand, within MPMX19_04753at 144.901 kb on + strand, within MPMX19_04753at 144.901 kb on + strand, within MPMX19_04753at 144.901 kb on + strand, within MPMX19_04753at 144.902 kb on - strand, within MPMX19_04753at 144.902 kb on - strand, within MPMX19_04753at 144.902 kb on - strand, within MPMX19_04753at 144.902 kb on - strand, within MPMX19_04753at 144.902 kb on - strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.060 kb on + strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.061 kb on - strand, within MPMX19_04753at 145.063 kb on + strand, within MPMX19_04753at 145.063 kb on + strand, within MPMX19_04753at 145.064 kb on - strand, within MPMX19_04753at 145.064 kb on - strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.213 kb on + strand, within MPMX19_04753at 145.214 kb on - strand, within MPMX19_04753at 145.214 kb on - strand, within MPMX19_04753at 145.214 kb on - strand, within MPMX19_04753at 145.214 kb on - strand, within MPMX19_04753at 145.214 kb on - strand, within MPMX19_04753at 145.214 kb on - strand, within MPMX19_04753

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
142,518 - MPMX19_04751 0.58 +1.1
143,474 + MPMX19_04752 0.40 -0.1
143,474 + MPMX19_04752 0.40 -0.8
143,474 + MPMX19_04752 0.40 -0.9
143,474 + MPMX19_04752 0.40 -1.2
143,474 + MPMX19_04752 0.40 -1.1
143,475 - MPMX19_04752 0.40 -0.1
143,475 - MPMX19_04752 0.40 -0.4
143,475 - MPMX19_04752 0.40 -0.2
143,475 - MPMX19_04752 0.40 +0.6
143,475 - MPMX19_04752 0.40 -2.2
143,729 + MPMX19_04752 0.60 +0.6
143,729 + MPMX19_04752 0.60 -1.0
143,729 + MPMX19_04752 0.60 -0.7
143,730 - MPMX19_04752 0.60 +0.1
143,933 + MPMX19_04752 0.76 +1.5
143,933 + MPMX19_04752 0.76 +0.1
143,933 + MPMX19_04752 0.76 +1.5
143,933 + MPMX19_04752 0.76 -0.9
143,933 + MPMX19_04752 0.76 -0.8
143,934 - MPMX19_04752 0.76 -0.1
143,934 - MPMX19_04752 0.76 -0.4
143,934 - MPMX19_04752 0.76 -0.8
143,934 - MPMX19_04752 0.76 +1.5
144,083 + MPMX19_04752 0.88 +0.5
144,084 - MPMX19_04752 0.88 +0.2
144,084 - MPMX19_04752 0.88 -0.2
144,085 + MPMX19_04752 0.88 -1.2
144,085 + MPMX19_04752 0.88 -0.3
144,085 + MPMX19_04752 0.88 -0.5
144,085 + MPMX19_04752 0.88 -1.0
144,085 + MPMX19_04752 0.88 -0.1
144,085 + MPMX19_04752 0.88 -1.1
144,085 + MPMX19_04752 0.88 -0.4
144,085 + MPMX19_04752 0.88 -0.6
144,085 + MPMX19_04752 0.88 +0.1
144,085 + MPMX19_04752 0.88 -0.2
144,086 - MPMX19_04752 0.88 -1.1
144,086 - MPMX19_04752 0.88 -1.8
144,086 - MPMX19_04752 0.88 -0.8
144,086 - MPMX19_04752 0.88 -0.0
144,086 - MPMX19_04752 0.88 +0.5
144,086 - MPMX19_04752 0.88 -0.6
144,086 - MPMX19_04752 0.88 -1.8
144,086 - MPMX19_04752 0.88 -0.3
144,086 - MPMX19_04752 0.88 -0.1
144,086 - MPMX19_04752 0.88 +0.1
144,200 + -0.4
144,256 + -1.6
144,256 + -0.1
144,256 + +0.3
144,257 - -0.3
144,257 - -0.3
144,415 + MPMX19_04753 0.12 -0.3
144,415 + MPMX19_04753 0.12 -0.2
144,415 + MPMX19_04753 0.12 +0.2
144,416 - MPMX19_04753 0.12 +0.1
144,416 - MPMX19_04753 0.12 -1.2
144,416 - MPMX19_04753 0.12 +0.4
144,416 - MPMX19_04753 0.12 -0.2
144,424 + MPMX19_04753 0.12 -0.0
144,424 + MPMX19_04753 0.12 -0.8
144,424 + MPMX19_04753 0.12 +1.1
144,424 + MPMX19_04753 0.12 +0.8
144,424 + MPMX19_04753 0.12 -1.3
144,424 + MPMX19_04753 0.12 +0.1
144,424 + MPMX19_04753 0.12 -0.3
144,425 - MPMX19_04753 0.12 +0.1
144,425 - MPMX19_04753 0.12 +0.2
144,425 - MPMX19_04753 0.12 -1.0
144,425 - MPMX19_04753 0.12 -1.9
144,541 + MPMX19_04753 0.20 +1.1
144,541 + MPMX19_04753 0.20 -1.3
144,541 + MPMX19_04753 0.20 -0.4
144,541 + MPMX19_04753 0.20 -1.3
144,541 + MPMX19_04753 0.20 -1.5
144,542 - MPMX19_04753 0.20 -0.3
144,542 - MPMX19_04753 0.20 -2.2
144,542 - MPMX19_04753 0.20 -1.0
144,542 - MPMX19_04753 0.20 -2.2
144,542 - MPMX19_04753 0.20 -1.2
144,542 - MPMX19_04753 0.20 -0.5
144,542 - MPMX19_04753 0.20 -0.8
144,826 + MPMX19_04753 0.40 -0.5
144,826 + MPMX19_04753 0.40 -0.2
144,826 + MPMX19_04753 0.40 -0.5
144,826 + MPMX19_04753 0.40 -1.3
144,826 + MPMX19_04753 0.40 -1.1
144,826 + MPMX19_04753 0.40 +1.8
144,826 + MPMX19_04753 0.40 -0.1
144,826 + MPMX19_04753 0.40 -3.2
144,826 + MPMX19_04753 0.40 +0.2
144,826 + MPMX19_04753 0.40 -1.3
144,826 + MPMX19_04753 0.40 -1.5
144,826 + MPMX19_04753 0.40 +1.1
144,826 + MPMX19_04753 0.40 -0.9
144,827 - MPMX19_04753 0.40 -1.1
144,827 - MPMX19_04753 0.40 -0.3
144,827 - MPMX19_04753 0.40 +0.6
144,827 - MPMX19_04753 0.40 -0.1
144,827 - MPMX19_04753 0.40 -1.1
144,827 - MPMX19_04753 0.40 -0.9
144,827 - MPMX19_04753 0.40 -0.9
144,827 - MPMX19_04753 0.40 -0.8
144,827 - MPMX19_04753 0.40 -0.3
144,827 - MPMX19_04753 0.40 -0.5
144,827 - MPMX19_04753 0.40 -0.3
144,880 + MPMX19_04753 0.44 -1.3
144,880 + MPMX19_04753 0.44 -1.6
144,880 + MPMX19_04753 0.44 +1.1
144,881 - MPMX19_04753 0.44 -0.3
144,881 - MPMX19_04753 0.44 -0.9
144,901 + MPMX19_04753 0.45 +0.1
144,901 + MPMX19_04753 0.45 -1.2
144,901 + MPMX19_04753 0.45 -0.4
144,901 + MPMX19_04753 0.45 -0.5
144,902 - MPMX19_04753 0.45 -0.9
144,902 - MPMX19_04753 0.45 -0.9
144,902 - MPMX19_04753 0.45 -1.8
144,902 - MPMX19_04753 0.45 -1.3
144,902 - MPMX19_04753 0.45 -1.9
145,060 + MPMX19_04753 0.56 +0.1
145,060 + MPMX19_04753 0.56 -0.3
145,060 + MPMX19_04753 0.56 -1.1
145,060 + MPMX19_04753 0.56 +0.5
145,060 + MPMX19_04753 0.56 -1.3
145,060 + MPMX19_04753 0.56 -2.2
145,060 + MPMX19_04753 0.56 -0.3
145,061 - MPMX19_04753 0.57 -0.8
145,061 - MPMX19_04753 0.57 +1.1
145,061 - MPMX19_04753 0.57 +0.7
145,061 - MPMX19_04753 0.57 -1.4
145,061 - MPMX19_04753 0.57 +0.3
145,061 - MPMX19_04753 0.57 -2.5
145,061 - MPMX19_04753 0.57 -0.0
145,061 - MPMX19_04753 0.57 -1.4
145,061 - MPMX19_04753 0.57 -0.3
145,061 - MPMX19_04753 0.57 -2.0
145,061 - MPMX19_04753 0.57 +0.8
145,061 - MPMX19_04753 0.57 +0.5
145,061 - MPMX19_04753 0.57 +0.1
145,061 - MPMX19_04753 0.57 +1.1
145,063 + MPMX19_04753 0.57 -0.8
145,063 + MPMX19_04753 0.57 +1.1
145,064 - MPMX19_04753 0.57 -0.5
145,064 - MPMX19_04753 0.57 -1.1
145,213 + MPMX19_04753 0.67 -1.3
145,213 + MPMX19_04753 0.67 -0.3
145,213 + MPMX19_04753 0.67 +0.7
145,213 + MPMX19_04753 0.67 +0.5
145,213 + MPMX19_04753 0.67 -1.1
145,213 + MPMX19_04753 0.67 -0.1
145,213 + MPMX19_04753 0.67 -0.8
145,213 + MPMX19_04753 0.67 -0.9
145,213 + MPMX19_04753 0.67 +0.6
145,214 - MPMX19_04753 0.67 -1.2
145,214 - MPMX19_04753 0.67 -0.8
145,214 - MPMX19_04753 0.67 -0.3
145,214 - MPMX19_04753 0.67 -1.9
145,214 - MPMX19_04753 0.67 -0.6
145,214 - MPMX19_04753 0.67 -0.5

Or see this region's nucleotide sequence