Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04722

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04721 and MPMX19_04722 are separated by 38 nucleotidesMPMX19_04722 and MPMX19_04723 overlap by 4 nucleotides MPMX19_04721: MPMX19_04721 - putative N-methylproline demethylase, at 110,226 to 112,271 _04721 MPMX19_04722: MPMX19_04722 - hypothetical protein, at 112,310 to 114,226 _04722 MPMX19_04723: MPMX19_04723 - Protein FixB, at 114,223 to 115,452 _04723 Position (kb) 112 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.771 kb on + strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.772 kb on - strand, within MPMX19_04721at 111.915 kb on + strand, within MPMX19_04721at 111.915 kb on + strand, within MPMX19_04721at 111.915 kb on + strand, within MPMX19_04721at 111.915 kb on + strand, within MPMX19_04721at 111.915 kb on + strand, within MPMX19_04721at 111.916 kb on - strand, within MPMX19_04721at 111.916 kb on - strand, within MPMX19_04721at 111.916 kb on - strand, within MPMX19_04721at 111.916 kb on - strand, within MPMX19_04721at 111.916 kb on - strand, within MPMX19_04721at 111.916 kb on - strand, within MPMX19_04721at 111.963 kb on + strand, within MPMX19_04721at 112.005 kb on + strand, within MPMX19_04721at 112.005 kb on + strand, within MPMX19_04721at 112.005 kb on + strand, within MPMX19_04721at 112.005 kb on + strand, within MPMX19_04721at 112.005 kb on + strand, within MPMX19_04721at 112.006 kb on - strand, within MPMX19_04721at 112.006 kb on - strand, within MPMX19_04721at 112.006 kb on - strand, within MPMX19_04721at 112.006 kb on - strand, within MPMX19_04721at 112.006 kb on - strand, within MPMX19_04721at 112.080 kb on + strandat 112.080 kb on + strandat 112.081 kb on - strandat 112.081 kb on - strandat 112.183 kb on - strandat 112.183 kb on - strandat 112.239 kb on + strandat 112.239 kb on + strandat 112.239 kb on + strandat 112.239 kb on + strandat 112.239 kb on + strandat 112.240 kb on - strandat 112.240 kb on - strandat 112.240 kb on - strandat 112.240 kb on - strandat 112.240 kb on - strandat 112.278 kb on + strandat 112.454 kb on + strandat 112.454 kb on + strandat 112.665 kb on + strand, within MPMX19_04722at 112.665 kb on + strand, within MPMX19_04722at 112.665 kb on + strand, within MPMX19_04722at 112.665 kb on + strand, within MPMX19_04722at 112.666 kb on - strand, within MPMX19_04722at 112.666 kb on - strand, within MPMX19_04722at 112.666 kb on - strand, within MPMX19_04722at 113.090 kb on + strand, within MPMX19_04722at 113.091 kb on - strand, within MPMX19_04722at 113.174 kb on + strand, within MPMX19_04722at 113.174 kb on + strand, within MPMX19_04722at 113.174 kb on + strand, within MPMX19_04722at 113.174 kb on + strand, within MPMX19_04722at 113.175 kb on - strand, within MPMX19_04722at 113.175 kb on - strand, within MPMX19_04722at 113.175 kb on - strand, within MPMX19_04722at 113.175 kb on - strand, within MPMX19_04722at 113.175 kb on - strand, within MPMX19_04722at 113.784 kb on - strand, within MPMX19_04722at 113.909 kb on + strand, within MPMX19_04722at 113.909 kb on + strand, within MPMX19_04722at 113.910 kb on - strand, within MPMX19_04722at 113.910 kb on - strand, within MPMX19_04722at 113.922 kb on - strand, within MPMX19_04722at 113.922 kb on - strand, within MPMX19_04722at 113.922 kb on - strand, within MPMX19_04722at 114.404 kb on + strand, within MPMX19_04723at 114.404 kb on + strand, within MPMX19_04723at 114.404 kb on + strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.405 kb on - strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on + strand, within MPMX19_04723at 114.409 kb on - strand, within MPMX19_04723at 114.410 kb on - strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.514 kb on + strand, within MPMX19_04723at 114.515 kb on - strand, within MPMX19_04723at 114.515 kb on - strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.709 kb on + strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723at 114.710 kb on - strand, within MPMX19_04723

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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111,771 + MPMX19_04721 0.76 +0.6
111,771 + MPMX19_04721 0.76 -0.0
111,771 + MPMX19_04721 0.76 -0.4
111,771 + MPMX19_04721 0.76 -0.7
111,771 + MPMX19_04721 0.76 +0.2
111,771 + MPMX19_04721 0.76 +0.1
111,771 + MPMX19_04721 0.76 +1.2
111,771 + MPMX19_04721 0.76 +1.8
111,771 + MPMX19_04721 0.76 -1.2
111,771 + MPMX19_04721 0.76 -1.9
111,772 - MPMX19_04721 0.76 -1.3
111,772 - MPMX19_04721 0.76 -1.1
111,772 - MPMX19_04721 0.76 -1.9
111,772 - MPMX19_04721 0.76 -2.5
111,772 - MPMX19_04721 0.76 -0.3
111,772 - MPMX19_04721 0.76 -0.4
111,772 - MPMX19_04721 0.76 -0.6
111,772 - MPMX19_04721 0.76 -0.3
111,772 - MPMX19_04721 0.76 +0.2
111,915 + MPMX19_04721 0.83 -0.3
111,915 + MPMX19_04721 0.83 -0.4
111,915 + MPMX19_04721 0.83 -0.4
111,915 + MPMX19_04721 0.83 +0.4
111,915 + MPMX19_04721 0.83 -0.1
111,916 - MPMX19_04721 0.83 -0.1
111,916 - MPMX19_04721 0.83 -0.5
111,916 - MPMX19_04721 0.83 -0.3
111,916 - MPMX19_04721 0.83 +1.6
111,916 - MPMX19_04721 0.83 -0.6
111,916 - MPMX19_04721 0.83 -1.5
111,963 + MPMX19_04721 0.85 -1.6
112,005 + MPMX19_04721 0.87 +0.5
112,005 + MPMX19_04721 0.87 +0.1
112,005 + MPMX19_04721 0.87 +0.6
112,005 + MPMX19_04721 0.87 -2.0
112,005 + MPMX19_04721 0.87 -1.8
112,006 - MPMX19_04721 0.87 -0.9
112,006 - MPMX19_04721 0.87 +0.2
112,006 - MPMX19_04721 0.87 -0.6
112,006 - MPMX19_04721 0.87 -2.6
112,006 - MPMX19_04721 0.87 +0.1
112,080 + +0.2
112,080 + +0.1
112,081 - +0.7
112,081 - +0.8
112,183 - -1.4
112,183 - -1.0
112,239 + -1.4
112,239 + +0.4
112,239 + -0.8
112,239 + -1.0
112,239 + -0.3
112,240 - +0.7
112,240 - +1.7
112,240 - +0.5
112,240 - -2.9
112,240 - -0.7
112,278 + +0.7
112,454 + -1.1
112,454 + -0.9
112,665 + MPMX19_04722 0.19 +0.7
112,665 + MPMX19_04722 0.19 -0.5
112,665 + MPMX19_04722 0.19 -0.3
112,665 + MPMX19_04722 0.19 +0.4
112,666 - MPMX19_04722 0.19 -0.6
112,666 - MPMX19_04722 0.19 +0.7
112,666 - MPMX19_04722 0.19 +0.2
113,090 + MPMX19_04722 0.41 -0.6
113,091 - MPMX19_04722 0.41 -0.1
113,174 + MPMX19_04722 0.45 +0.6
113,174 + MPMX19_04722 0.45 +0.6
113,174 + MPMX19_04722 0.45 +1.1
113,174 + MPMX19_04722 0.45 -2.4
113,175 - MPMX19_04722 0.45 -0.1
113,175 - MPMX19_04722 0.45 -1.5
113,175 - MPMX19_04722 0.45 -0.3
113,175 - MPMX19_04722 0.45 -0.7
113,175 - MPMX19_04722 0.45 -1.6
113,784 - MPMX19_04722 0.77 -0.5
113,909 + MPMX19_04722 0.83 +0.2
113,909 + MPMX19_04722 0.83 -1.9
113,910 - MPMX19_04722 0.83 +0.2
113,910 - MPMX19_04722 0.83 -0.7
113,922 - MPMX19_04722 0.84 -0.2
113,922 - MPMX19_04722 0.84 +0.0
113,922 - MPMX19_04722 0.84 +0.3
114,404 + MPMX19_04723 0.15 -1.3
114,404 + MPMX19_04723 0.15 +0.7
114,404 + MPMX19_04723 0.15 -0.8
114,405 - MPMX19_04723 0.15 +0.6
114,405 - MPMX19_04723 0.15 +0.2
114,405 - MPMX19_04723 0.15 -0.4
114,405 - MPMX19_04723 0.15 -1.1
114,405 - MPMX19_04723 0.15 -0.7
114,405 - MPMX19_04723 0.15 -1.2
114,409 + MPMX19_04723 0.15 -0.3
114,409 + MPMX19_04723 0.15 -0.1
114,409 + MPMX19_04723 0.15 +1.2
114,409 + MPMX19_04723 0.15 +2.1
114,409 - MPMX19_04723 0.15 -0.9
114,410 - MPMX19_04723 0.15 -0.2
114,514 + MPMX19_04723 0.24 -0.1
114,514 + MPMX19_04723 0.24 -0.9
114,514 + MPMX19_04723 0.24 -0.8
114,514 + MPMX19_04723 0.24 -1.5
114,515 - MPMX19_04723 0.24 -0.0
114,515 - MPMX19_04723 0.24 -0.5
114,709 + MPMX19_04723 0.40 +0.7
114,709 + MPMX19_04723 0.40 -0.4
114,709 + MPMX19_04723 0.40 -0.3
114,709 + MPMX19_04723 0.40 -0.8
114,709 + MPMX19_04723 0.40 +0.4
114,710 - MPMX19_04723 0.40 +0.1
114,710 - MPMX19_04723 0.40 -1.5
114,710 - MPMX19_04723 0.40 -0.4
114,710 - MPMX19_04723 0.40 -0.4
114,710 - MPMX19_04723 0.40 +0.1
114,710 - MPMX19_04723 0.40 +0.3
114,710 - MPMX19_04723 0.40 -0.4
114,710 - MPMX19_04723 0.40 -0.4
114,710 - MPMX19_04723 0.40 -0.1
114,710 - MPMX19_04723 0.40 -0.4
114,710 - MPMX19_04723 0.40 +1.6
114,710 - MPMX19_04723 0.40 +1.3
114,710 - MPMX19_04723 0.40 +0.8

Or see this region's nucleotide sequence