Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04715

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04714 and MPMX19_04715 are separated by 54 nucleotidesMPMX19_04715 and MPMX19_04716 overlap by 4 nucleotides MPMX19_04714: MPMX19_04714 - L-cystine-binding protein FliY, at 101,418 to 102,164 _04714 MPMX19_04715: MPMX19_04715 - hypothetical protein, at 102,219 to 102,794 _04715 MPMX19_04716: MPMX19_04716 - Vitamin B12 import ATP-binding protein BtuD, at 102,791 to 104,533 _04716 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 101.288 kb on + strandat 101.288 kb on + strandat 101.288 kb on + strandat 101.288 kb on + strandat 101.288 kb on + strandat 101.289 kb on - strandat 101.289 kb on - strandat 101.289 kb on - strandat 101.289 kb on - strandat 101.385 kb on - strandat 101.385 kb on - strandat 101.620 kb on - strand, within MPMX19_04714at 101.796 kb on + strand, within MPMX19_04714at 101.797 kb on - strand, within MPMX19_04714at 101.853 kb on + strand, within MPMX19_04714at 101.854 kb on - strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.162 kb on + strandat 102.331 kb on + strand, within MPMX19_04715at 102.331 kb on + strand, within MPMX19_04715at 102.331 kb on + strand, within MPMX19_04715at 102.331 kb on + strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.438 kb on + strand, within MPMX19_04715at 102.438 kb on + strand, within MPMX19_04715at 102.439 kb on - strand, within MPMX19_04715at 102.439 kb on - strand, within MPMX19_04715at 102.514 kb on + strand, within MPMX19_04715at 102.514 kb on + strand, within MPMX19_04715at 102.514 kb on + strand, within MPMX19_04715at 102.515 kb on - strand, within MPMX19_04715at 102.515 kb on - strand, within MPMX19_04715at 102.515 kb on - strand, within MPMX19_04715at 102.602 kb on + strand, within MPMX19_04715at 102.603 kb on - strand, within MPMX19_04715at 102.692 kb on + strand, within MPMX19_04715at 102.693 kb on - strand, within MPMX19_04715at 102.842 kb on + strandat 102.843 kb on - strandat 102.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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101,288 + +0.6
101,288 + -0.6
101,288 + -1.8
101,288 + -0.5
101,288 + +0.5
101,289 - +0.8
101,289 - -0.2
101,289 - +0.1
101,289 - -0.5
101,385 - +0.1
101,385 - -1.3
101,620 - MPMX19_04714 0.27 -0.9
101,796 + MPMX19_04714 0.51 -0.3
101,797 - MPMX19_04714 0.51 -0.3
101,853 + MPMX19_04714 0.58 -1.6
101,854 - MPMX19_04714 0.58 -0.3
101,979 + MPMX19_04714 0.75 -0.1
101,979 + MPMX19_04714 0.75 +0.1
101,979 + MPMX19_04714 0.75 -0.4
101,979 + MPMX19_04714 0.75 -1.0
101,979 + MPMX19_04714 0.75 -0.1
101,979 + MPMX19_04714 0.75 -1.0
101,980 - MPMX19_04714 0.75 -1.9
101,980 - MPMX19_04714 0.75 -0.4
101,980 - MPMX19_04714 0.75 -0.9
101,980 - MPMX19_04714 0.75 -1.8
101,980 - MPMX19_04714 0.75 -1.3
102,051 + MPMX19_04714 0.85 -0.8
102,051 + MPMX19_04714 0.85 -1.4
102,051 + MPMX19_04714 0.85 -0.4
102,051 + MPMX19_04714 0.85 -1.4
102,051 + MPMX19_04714 0.85 +0.1
102,051 + MPMX19_04714 0.85 +2.1
102,051 + MPMX19_04714 0.85 -1.3
102,052 - MPMX19_04714 0.85 -0.4
102,052 - MPMX19_04714 0.85 -1.5
102,052 - MPMX19_04714 0.85 +0.6
102,052 - MPMX19_04714 0.85 -1.8
102,052 - MPMX19_04714 0.85 +0.5
102,052 - MPMX19_04714 0.85 +0.7
102,052 - MPMX19_04714 0.85 -0.1
102,162 + -1.5
102,331 + MPMX19_04715 0.19 -1.5
102,331 + MPMX19_04715 0.19 +0.6
102,331 + MPMX19_04715 0.19 -1.6
102,331 + MPMX19_04715 0.19 -0.0
102,332 - MPMX19_04715 0.20 -1.3
102,332 - MPMX19_04715 0.20 -1.3
102,332 - MPMX19_04715 0.20 +0.3
102,332 - MPMX19_04715 0.20 +1.6
102,332 - MPMX19_04715 0.20 -0.3
102,332 - MPMX19_04715 0.20 -0.5
102,332 - MPMX19_04715 0.20 -0.8
102,332 - MPMX19_04715 0.20 +0.5
102,438 + MPMX19_04715 0.38 -0.5
102,438 + MPMX19_04715 0.38 +0.1
102,439 - MPMX19_04715 0.38 +1.8
102,439 - MPMX19_04715 0.38 +0.3
102,514 + MPMX19_04715 0.51 -1.3
102,514 + MPMX19_04715 0.51 +0.8
102,514 + MPMX19_04715 0.51 +0.6
102,515 - MPMX19_04715 0.51 +0.2
102,515 - MPMX19_04715 0.51 +0.1
102,515 - MPMX19_04715 0.51 +0.2
102,602 + MPMX19_04715 0.66 -0.3
102,603 - MPMX19_04715 0.67 +0.5
102,692 + MPMX19_04715 0.82 -0.6
102,693 - MPMX19_04715 0.82 -0.2
102,842 + -1.5
102,843 - -0.8
102,843 - -0.5

Or see this region's nucleotide sequence