Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04711 and MPMX19_04712 are separated by 19 nucleotides MPMX19_04712 and MPMX19_04713 are separated by 75 nucleotides MPMX19_04713 and MPMX19_04714 are separated by 200 nucleotides
MPMX19_04711: MPMX19_04711 - Formyltetrahydrofolate deformylase, at 98,808 to 99,671
_04711
MPMX19_04712: MPMX19_04712 - hypothetical protein, at 99,691 to 99,867
_04712
MPMX19_04713: MPMX19_04713 - putative MFS-type transporter YcaD, at 99,943 to 101,217
_04713
MPMX19_04714: MPMX19_04714 - L-cystine-binding protein FliY, at 101,418 to 102,164
_04714
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.132 kb on + strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.330 kb on + strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.403 kb on + strand, within MPMX19_04711 at 99.403 kb on + strand, within MPMX19_04711 at 99.430 kb on - strand, within MPMX19_04711 at 99.430 kb on - strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.863 kb on + strand at 99.864 kb on - strand at 99.864 kb on - strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 100.003 kb on - strand at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.088 kb on - strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.150 kb on - strand, within MPMX19_04713 at 100.150 kb on - strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.358 kb on - strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.528 kb on + strand, within MPMX19_04713 at 100.591 kb on + strand, within MPMX19_04713 at 100.591 kb on + strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.716 kb on + strand, within MPMX19_04713 at 100.716 kb on + strand, within MPMX19_04713 at 100.716 kb on + strand, within MPMX19_04713 at 100.716 kb on + strand, within MPMX19_04713 at 100.855 kb on + strand, within MPMX19_04713 at 100.855 kb on + strand, within MPMX19_04713 at 100.855 kb on + strand, within MPMX19_04713 at 100.856 kb on - strand, within MPMX19_04713 at 100.856 kb on - strand, within MPMX19_04713 at 101.288 kb on + strand at 101.288 kb on + strand at 101.288 kb on + strand at 101.288 kb on + strand at 101.288 kb on + strand at 101.289 kb on - strand at 101.289 kb on - strand at 101.289 kb on - strand at 101.289 kb on - strand at 101.385 kb on - strand at 101.385 kb on - strand at 101.620 kb on - strand, within MPMX19_04714 at 101.796 kb on + strand, within MPMX19_04714 at 101.797 kb on - strand, within MPMX19_04714 at 101.853 kb on + strand, within MPMX19_04714 at 101.854 kb on - strand, within MPMX19_04714 at 101.979 kb on + strand, within MPMX19_04714 at 101.979 kb on + strand, within MPMX19_04714 at 101.979 kb on + strand, within MPMX19_04714 at 101.979 kb on + strand, within MPMX19_04714 at 101.979 kb on + strand, within MPMX19_04714 at 101.979 kb on + strand, within MPMX19_04714 at 101.980 kb on - strand, within MPMX19_04714 at 101.980 kb on - strand, within MPMX19_04714 at 101.980 kb on - strand, within MPMX19_04714 at 101.980 kb on - strand, within MPMX19_04714 at 101.980 kb on - strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.051 kb on + strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.052 kb on - strand, within MPMX19_04714 at 102.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 99,132 + MPMX19_04711 0.38 -0.3 99,229 - MPMX19_04711 0.49 +1.1 99,229 - MPMX19_04711 0.49 +1.1 99,229 - MPMX19_04711 0.49 -1.1 99,330 + MPMX19_04711 0.60 +1.1 99,331 - MPMX19_04711 0.61 -0.5 99,331 - MPMX19_04711 0.61 -1.3 99,331 - MPMX19_04711 0.61 -0.4 99,331 - MPMX19_04711 0.61 +0.1 99,331 - MPMX19_04711 0.61 -0.0 99,331 - MPMX19_04711 0.61 -0.3 99,403 + MPMX19_04711 0.69 -0.6 99,403 + MPMX19_04711 0.69 +1.2 99,430 - MPMX19_04711 0.72 +1.1 99,430 - MPMX19_04711 0.72 -0.8 99,441 + MPMX19_04711 0.73 -0.7 99,441 + MPMX19_04711 0.73 -0.3 99,441 + MPMX19_04711 0.73 -0.3 99,442 - MPMX19_04711 0.73 +0.8 99,442 - MPMX19_04711 0.73 -0.4 99,442 - MPMX19_04711 0.73 -1.9 99,442 - MPMX19_04711 0.73 +0.2 99,480 + MPMX19_04711 0.78 -0.3 99,480 + MPMX19_04711 0.78 +0.6 99,480 + MPMX19_04711 0.78 +0.2 99,480 + MPMX19_04711 0.78 -0.8 99,480 + MPMX19_04711 0.78 -0.6 99,480 + MPMX19_04711 0.78 +0.8 99,481 - MPMX19_04711 0.78 -0.8 99,481 - MPMX19_04711 0.78 -0.5 99,481 - MPMX19_04711 0.78 -0.7 99,481 - MPMX19_04711 0.78 -0.9 99,481 - MPMX19_04711 0.78 +1.3 99,481 - MPMX19_04711 0.78 +0.2 99,481 - MPMX19_04711 0.78 -1.9 99,481 - MPMX19_04711 0.78 -0.3 99,481 - MPMX19_04711 0.78 -0.9 99,481 - MPMX19_04711 0.78 -1.4 99,481 - MPMX19_04711 0.78 +0.6 99,863 + -0.4 99,864 - -0.5 99,864 - +0.5 99,865 + -1.3 99,865 + -0.3 99,865 + -0.6 99,865 + +0.8 99,865 + -0.1 99,865 + +0.7 99,865 + -1.0 99,865 + -1.6 99,865 + -2.6 99,865 + -0.8 99,865 + -0.5 99,866 - -1.1 99,866 - -0.5 99,866 - -0.8 99,866 - -1.3 99,866 - +0.3 99,866 - +1.8 99,866 - -1.3 99,866 - -1.4 99,866 - -0.5 99,866 - -0.9 99,866 - -3.2 99,866 - -1.2 99,866 - -0.7 100,003 - -0.9 100,087 + MPMX19_04713 0.11 -0.7 100,087 + MPMX19_04713 0.11 +0.3 100,087 + MPMX19_04713 0.11 +0.1 100,087 + MPMX19_04713 0.11 -1.5 100,087 + MPMX19_04713 0.11 +0.1 100,088 - MPMX19_04713 0.11 +0.5 100,090 + MPMX19_04713 0.12 -0.0 100,090 + MPMX19_04713 0.12 -0.5 100,090 + MPMX19_04713 0.12 -1.4 100,090 + MPMX19_04713 0.12 -0.1 100,090 + MPMX19_04713 0.12 +0.2 100,091 - MPMX19_04713 0.12 -2.1 100,091 - MPMX19_04713 0.12 -0.4 100,091 - MPMX19_04713 0.12 +0.8 100,091 - MPMX19_04713 0.12 -0.8 100,149 + MPMX19_04713 0.16 +0.5 100,149 + MPMX19_04713 0.16 -0.4 100,149 + MPMX19_04713 0.16 +0.2 100,149 + MPMX19_04713 0.16 +0.2 100,149 + MPMX19_04713 0.16 -1.5 100,150 - MPMX19_04713 0.16 -0.6 100,150 - MPMX19_04713 0.16 -0.8 100,342 + MPMX19_04713 0.31 -0.3 100,342 + MPMX19_04713 0.31 -0.6 100,342 + MPMX19_04713 0.31 -1.6 100,342 + MPMX19_04713 0.31 -0.2 100,342 + MPMX19_04713 0.31 -0.4 100,342 + MPMX19_04713 0.31 -1.3 100,342 + MPMX19_04713 0.31 +0.4 100,342 + MPMX19_04713 0.31 -0.1 100,342 + MPMX19_04713 0.31 -0.2 100,343 - MPMX19_04713 0.31 -1.4 100,343 - MPMX19_04713 0.31 +0.7 100,343 - MPMX19_04713 0.31 -0.6 100,343 - MPMX19_04713 0.31 +0.1 100,343 - MPMX19_04713 0.31 -1.3 100,343 - MPMX19_04713 0.31 +0.5 100,343 - MPMX19_04713 0.31 -0.9 100,343 - MPMX19_04713 0.31 -0.3 100,343 - MPMX19_04713 0.31 -1.9 100,343 - MPMX19_04713 0.31 -1.2 100,357 + MPMX19_04713 0.32 -0.0 100,357 + MPMX19_04713 0.32 -0.8 100,357 + MPMX19_04713 0.32 -0.3 100,357 + MPMX19_04713 0.32 -0.8 100,357 + MPMX19_04713 0.32 +0.2 100,358 - MPMX19_04713 0.33 -0.1 100,381 + MPMX19_04713 0.34 +0.7 100,381 + MPMX19_04713 0.34 -0.3 100,381 + MPMX19_04713 0.34 +0.8 100,381 + MPMX19_04713 0.34 +1.6 100,381 + MPMX19_04713 0.34 +0.6 100,382 - MPMX19_04713 0.34 -1.4 100,382 - MPMX19_04713 0.34 +0.2 100,382 - MPMX19_04713 0.34 -0.5 100,528 + MPMX19_04713 0.46 +2.5 100,591 + MPMX19_04713 0.51 -1.2 100,591 + MPMX19_04713 0.51 -0.1 100,592 - MPMX19_04713 0.51 -0.5 100,592 - MPMX19_04713 0.51 +0.6 100,592 - MPMX19_04713 0.51 -0.5 100,592 - MPMX19_04713 0.51 -1.5 100,592 - MPMX19_04713 0.51 -0.9 100,592 - MPMX19_04713 0.51 -0.6 100,592 - MPMX19_04713 0.51 -0.4 100,592 - MPMX19_04713 0.51 +0.5 100,592 - MPMX19_04713 0.51 -0.1 100,592 - MPMX19_04713 0.51 +1.3 100,592 - MPMX19_04713 0.51 -0.6 100,592 - MPMX19_04713 0.51 -0.3 100,592 - MPMX19_04713 0.51 -0.4 100,609 + MPMX19_04713 0.52 +0.9 100,609 + MPMX19_04713 0.52 -0.5 100,609 + MPMX19_04713 0.52 -0.2 100,609 + MPMX19_04713 0.52 +0.1 100,609 + MPMX19_04713 0.52 +0.4 100,609 + MPMX19_04713 0.52 -0.4 100,609 + MPMX19_04713 0.52 -0.5 100,609 + MPMX19_04713 0.52 -0.8 100,609 + MPMX19_04713 0.52 +0.8 100,609 + MPMX19_04713 0.52 +0.2 100,610 - MPMX19_04713 0.52 -0.3 100,610 - MPMX19_04713 0.52 +0.4 100,610 - MPMX19_04713 0.52 +0.5 100,610 - MPMX19_04713 0.52 +0.8 100,610 - MPMX19_04713 0.52 +0.5 100,610 - MPMX19_04713 0.52 -0.0 100,610 - MPMX19_04713 0.52 -0.9 100,610 - MPMX19_04713 0.52 -0.4 100,610 - MPMX19_04713 0.52 -0.2 100,610 - MPMX19_04713 0.52 -1.4 100,716 + MPMX19_04713 0.61 -0.8 100,716 + MPMX19_04713 0.61 -0.5 100,716 + MPMX19_04713 0.61 -1.6 100,716 + MPMX19_04713 0.61 -1.9 100,855 + MPMX19_04713 0.72 -0.6 100,855 + MPMX19_04713 0.72 -0.9 100,855 + MPMX19_04713 0.72 -0.4 100,856 - MPMX19_04713 0.72 -1.9 100,856 - MPMX19_04713 0.72 -0.3 101,288 + +0.6 101,288 + -0.6 101,288 + -1.8 101,288 + -0.5 101,288 + +0.5 101,289 - +0.8 101,289 - -0.2 101,289 - +0.1 101,289 - -0.5 101,385 - +0.1 101,385 - -1.3 101,620 - MPMX19_04714 0.27 -0.9 101,796 + MPMX19_04714 0.51 -0.3 101,797 - MPMX19_04714 0.51 -0.3 101,853 + MPMX19_04714 0.58 -1.6 101,854 - MPMX19_04714 0.58 -0.3 101,979 + MPMX19_04714 0.75 -0.1 101,979 + MPMX19_04714 0.75 +0.1 101,979 + MPMX19_04714 0.75 -0.4 101,979 + MPMX19_04714 0.75 -1.0 101,979 + MPMX19_04714 0.75 -0.1 101,979 + MPMX19_04714 0.75 -1.0 101,980 - MPMX19_04714 0.75 -1.9 101,980 - MPMX19_04714 0.75 -0.4 101,980 - MPMX19_04714 0.75 -0.9 101,980 - MPMX19_04714 0.75 -1.8 101,980 - MPMX19_04714 0.75 -1.3 102,051 + MPMX19_04714 0.85 -0.8 102,051 + MPMX19_04714 0.85 -1.4 102,051 + MPMX19_04714 0.85 -0.4 102,051 + MPMX19_04714 0.85 -1.4 102,051 + MPMX19_04714 0.85 +0.1 102,051 + MPMX19_04714 0.85 +2.1 102,051 + MPMX19_04714 0.85 -1.3 102,052 - MPMX19_04714 0.85 -0.4 102,052 - MPMX19_04714 0.85 -1.5 102,052 - MPMX19_04714 0.85 +0.6 102,052 - MPMX19_04714 0.85 -1.8 102,052 - MPMX19_04714 0.85 +0.5 102,052 - MPMX19_04714 0.85 +0.7 102,052 - MPMX19_04714 0.85 -0.1 102,162 + -1.5
Or see this region's nucleotide sequence