Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04693

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04691 and MPMX19_04692 are separated by 23 nucleotidesMPMX19_04692 and MPMX19_04693 overlap by 4 nucleotidesMPMX19_04693 and MPMX19_04694 overlap by 4 nucleotidesMPMX19_04694 and MPMX19_04695 overlap by 4 nucleotides MPMX19_04691: MPMX19_04691 - hypothetical protein, at 77,297 to 78,025 _04691 MPMX19_04692: MPMX19_04692 - hypothetical protein, at 78,049 to 78,468 _04692 MPMX19_04693: MPMX19_04693 - hypothetical protein, at 78,465 to 78,746 _04693 MPMX19_04694: MPMX19_04694 - Na(+)/H(+) antiporter subunit E1, at 78,743 to 79,243 _04694 MPMX19_04695: MPMX19_04695 - Na(+)/H(+) antiporter subunit D, at 79,240 to 80,868 _04695 Position (kb) 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.708 kb on + strand, within MPMX19_04691at 77.708 kb on + strand, within MPMX19_04691at 77.708 kb on + strand, within MPMX19_04691at 77.709 kb on - strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.806 kb on + strand, within MPMX19_04691at 77.828 kb on + strand, within MPMX19_04691at 77.828 kb on + strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 78.042 kb on + strandat 78.042 kb on + strandat 78.168 kb on - strand, within MPMX19_04692at 78.337 kb on + strand, within MPMX19_04692at 78.337 kb on + strand, within MPMX19_04692at 78.338 kb on - strand, within MPMX19_04692at 78.338 kb on - strand, within MPMX19_04692at 78.338 kb on - strand, within MPMX19_04692at 78.347 kb on + strand, within MPMX19_04692at 78.347 kb on + strand, within MPMX19_04692at 78.347 kb on + strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.556 kb on + strand, within MPMX19_04693at 78.556 kb on + strand, within MPMX19_04693at 78.556 kb on + strand, within MPMX19_04693at 78.557 kb on - strand, within MPMX19_04693at 78.557 kb on - strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.774 kb on + strandat 78.775 kb on - strandat 78.775 kb on - strandat 78.858 kb on + strand, within MPMX19_04694at 78.858 kb on + strand, within MPMX19_04694at 78.858 kb on + strand, within MPMX19_04694at 78.858 kb on + strand, within MPMX19_04694at 78.859 kb on - strand, within MPMX19_04694at 78.859 kb on - strand, within MPMX19_04694at 78.919 kb on - strand, within MPMX19_04694at 79.213 kb on - strandat 79.300 kb on - strandat 79.300 kb on - strandat 79.300 kb on - strandat 79.300 kb on - strandat 79.300 kb on - strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.301 kb on + strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.302 kb on - strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.343 kb on + strandat 79.344 kb on - strandat 79.344 kb on - strandat 79.344 kb on - strandat 79.344 kb on - strandat 79.344 kb on - strandat 79.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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77,708 + MPMX19_04691 0.56 -0.1
77,708 + MPMX19_04691 0.56 +0.8
77,708 + MPMX19_04691 0.56 +0.0
77,709 - MPMX19_04691 0.57 -0.1
77,780 + MPMX19_04691 0.66 +1.1
77,780 + MPMX19_04691 0.66 +0.3
77,780 + MPMX19_04691 0.66 +0.1
77,780 + MPMX19_04691 0.66 -0.3
77,780 + MPMX19_04691 0.66 -0.4
77,780 + MPMX19_04691 0.66 -0.1
77,780 + MPMX19_04691 0.66 -0.5
77,780 + MPMX19_04691 0.66 +0.2
77,780 + MPMX19_04691 0.66 -0.6
77,781 - MPMX19_04691 0.66 +0.5
77,781 - MPMX19_04691 0.66 -0.5
77,781 - MPMX19_04691 0.66 -1.0
77,781 - MPMX19_04691 0.66 -1.1
77,781 - MPMX19_04691 0.66 +0.5
77,781 - MPMX19_04691 0.66 +0.7
77,781 - MPMX19_04691 0.66 -0.4
77,781 - MPMX19_04691 0.66 +2.1
77,806 + MPMX19_04691 0.70 -0.5
77,828 + MPMX19_04691 0.73 +0.2
77,828 + MPMX19_04691 0.73 +0.5
77,829 - MPMX19_04691 0.73 +0.1
77,829 - MPMX19_04691 0.73 -0.6
77,829 - MPMX19_04691 0.73 +0.7
77,829 - MPMX19_04691 0.73 -1.1
77,829 - MPMX19_04691 0.73 -0.8
77,829 - MPMX19_04691 0.73 -1.9
77,829 - MPMX19_04691 0.73 -0.8
77,829 - MPMX19_04691 0.73 +0.5
78,042 + -0.3
78,042 + -0.5
78,168 - MPMX19_04692 0.28 +0.2
78,337 + MPMX19_04692 0.69 -1.0
78,337 + MPMX19_04692 0.69 -0.8
78,338 - MPMX19_04692 0.69 -1.1
78,338 - MPMX19_04692 0.69 -2.0
78,338 - MPMX19_04692 0.69 +0.2
78,347 + MPMX19_04692 0.71 -0.3
78,347 + MPMX19_04692 0.71 +1.7
78,347 + MPMX19_04692 0.71 +1.5
78,348 - MPMX19_04692 0.71 -0.9
78,348 - MPMX19_04692 0.71 -0.5
78,348 - MPMX19_04692 0.71 -1.1
78,348 - MPMX19_04692 0.71 -0.9
78,348 - MPMX19_04692 0.71 -0.5
78,348 - MPMX19_04692 0.71 +0.5
78,556 + MPMX19_04693 0.32 -0.4
78,556 + MPMX19_04693 0.32 +0.2
78,556 + MPMX19_04693 0.32 -0.3
78,557 - MPMX19_04693 0.33 -0.1
78,557 - MPMX19_04693 0.33 +0.5
78,613 + MPMX19_04693 0.52 +1.6
78,613 + MPMX19_04693 0.52 -1.5
78,613 + MPMX19_04693 0.52 +0.3
78,613 + MPMX19_04693 0.52 -0.2
78,613 + MPMX19_04693 0.52 -1.0
78,613 + MPMX19_04693 0.52 -1.1
78,614 - MPMX19_04693 0.53 +1.1
78,614 - MPMX19_04693 0.53 +0.4
78,614 - MPMX19_04693 0.53 +0.1
78,614 - MPMX19_04693 0.53 +2.1
78,614 - MPMX19_04693 0.53 -0.9
78,614 - MPMX19_04693 0.53 +0.1
78,614 - MPMX19_04693 0.53 -2.6
78,774 + +0.3
78,775 - +0.8
78,775 - -1.4
78,858 + MPMX19_04694 0.23 -1.2
78,858 + MPMX19_04694 0.23 -0.4
78,858 + MPMX19_04694 0.23 -1.1
78,858 + MPMX19_04694 0.23 -1.0
78,859 - MPMX19_04694 0.23 -0.6
78,859 - MPMX19_04694 0.23 -0.3
78,919 - MPMX19_04694 0.35 +0.1
79,213 - -0.8
79,300 - -2.2
79,300 - +0.2
79,300 - +0.7
79,300 - -1.1
79,300 - -1.1
79,301 + -0.9
79,301 + -1.6
79,301 + -1.3
79,301 + -1.6
79,301 + -0.1
79,301 + -0.1
79,301 + -0.7
79,301 + -0.0
79,301 + -0.9
79,301 + -0.6
79,301 + +0.5
79,301 + -1.0
79,301 + -0.6
79,302 - -1.3
79,302 - +0.6
79,302 - -0.6
79,302 - -0.4
79,302 - +1.0
79,302 - +0.1
79,302 - -0.5
79,302 - -0.6
79,302 - -0.1
79,302 - -1.1
79,302 - -1.4
79,302 - +1.3
79,343 + -2.8
79,343 + -2.2
79,343 + -0.9
79,343 + -0.4
79,343 + -0.6
79,343 + -0.1
79,343 + -0.7
79,343 + +0.4
79,343 + +0.2
79,343 + -1.4
79,343 + -0.8
79,343 + +1.5
79,344 - -1.1
79,344 - +1.1
79,344 - -0.6
79,344 - -1.3
79,344 - +0.3
79,344 - -1.3

Or see this region's nucleotide sequence