Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04691

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04690 and MPMX19_04691 are separated by 223 nucleotidesMPMX19_04691 and MPMX19_04692 are separated by 23 nucleotidesMPMX19_04692 and MPMX19_04693 overlap by 4 nucleotidesMPMX19_04693 and MPMX19_04694 overlap by 4 nucleotides MPMX19_04690: MPMX19_04690 - hypothetical protein, at 76,057 to 77,073 _04690 MPMX19_04691: MPMX19_04691 - hypothetical protein, at 77,297 to 78,025 _04691 MPMX19_04692: MPMX19_04692 - hypothetical protein, at 78,049 to 78,468 _04692 MPMX19_04693: MPMX19_04693 - hypothetical protein, at 78,465 to 78,746 _04693 MPMX19_04694: MPMX19_04694 - Na(+)/H(+) antiporter subunit E1, at 78,743 to 79,243 _04694 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2at 76.427 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.811 kb on + strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.812 kb on - strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.820 kb on + strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 76.821 kb on - strand, within MPMX19_04690at 77.101 kb on + strandat 77.101 kb on + strandat 77.102 kb on - strandat 77.253 kb on + strandat 77.708 kb on + strand, within MPMX19_04691at 77.708 kb on + strand, within MPMX19_04691at 77.708 kb on + strand, within MPMX19_04691at 77.709 kb on - strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.780 kb on + strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.781 kb on - strand, within MPMX19_04691at 77.806 kb on + strand, within MPMX19_04691at 77.828 kb on + strand, within MPMX19_04691at 77.828 kb on + strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 77.829 kb on - strand, within MPMX19_04691at 78.042 kb on + strandat 78.042 kb on + strandat 78.168 kb on - strand, within MPMX19_04692at 78.337 kb on + strand, within MPMX19_04692at 78.337 kb on + strand, within MPMX19_04692at 78.338 kb on - strand, within MPMX19_04692at 78.338 kb on - strand, within MPMX19_04692at 78.338 kb on - strand, within MPMX19_04692at 78.347 kb on + strand, within MPMX19_04692at 78.347 kb on + strand, within MPMX19_04692at 78.347 kb on + strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.348 kb on - strand, within MPMX19_04692at 78.556 kb on + strand, within MPMX19_04693at 78.556 kb on + strand, within MPMX19_04693at 78.556 kb on + strand, within MPMX19_04693at 78.557 kb on - strand, within MPMX19_04693at 78.557 kb on - strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.613 kb on + strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.614 kb on - strand, within MPMX19_04693at 78.774 kb on + strandat 78.775 kb on - strandat 78.775 kb on - strandat 78.858 kb on + strand, within MPMX19_04694at 78.858 kb on + strand, within MPMX19_04694at 78.858 kb on + strand, within MPMX19_04694at 78.858 kb on + strand, within MPMX19_04694at 78.859 kb on - strand, within MPMX19_04694at 78.859 kb on - strand, within MPMX19_04694at 78.919 kb on - strand, within MPMX19_04694

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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76,427 + MPMX19_04690 0.36 -0.9
76,811 + MPMX19_04690 0.74 -1.1
76,811 + MPMX19_04690 0.74 -1.9
76,811 + MPMX19_04690 0.74 -0.9
76,811 + MPMX19_04690 0.74 -2.2
76,811 + MPMX19_04690 0.74 -1.5
76,811 + MPMX19_04690 0.74 -1.2
76,811 + MPMX19_04690 0.74 +0.3
76,811 + MPMX19_04690 0.74 -2.0
76,811 + MPMX19_04690 0.74 -0.5
76,811 + MPMX19_04690 0.74 -1.1
76,811 + MPMX19_04690 0.74 -1.3
76,811 + MPMX19_04690 0.74 -1.9
76,811 + MPMX19_04690 0.74 +0.8
76,811 + MPMX19_04690 0.74 -2.0
76,811 + MPMX19_04690 0.74 -0.3
76,811 + MPMX19_04690 0.74 +0.2
76,811 + MPMX19_04690 0.74 -0.9
76,811 + MPMX19_04690 0.74 -1.9
76,812 - MPMX19_04690 0.74 -0.8
76,812 - MPMX19_04690 0.74 -0.8
76,812 - MPMX19_04690 0.74 +0.1
76,812 - MPMX19_04690 0.74 +0.8
76,812 - MPMX19_04690 0.74 -0.5
76,812 - MPMX19_04690 0.74 +0.7
76,812 - MPMX19_04690 0.74 +0.1
76,812 - MPMX19_04690 0.74 +0.7
76,812 - MPMX19_04690 0.74 -0.4
76,812 - MPMX19_04690 0.74 -0.6
76,812 - MPMX19_04690 0.74 +1.7
76,812 - MPMX19_04690 0.74 +1.1
76,812 - MPMX19_04690 0.74 +0.9
76,820 + MPMX19_04690 0.75 -1.1
76,820 + MPMX19_04690 0.75 +0.2
76,820 + MPMX19_04690 0.75 +1.1
76,820 + MPMX19_04690 0.75 +1.7
76,820 + MPMX19_04690 0.75 +0.2
76,820 + MPMX19_04690 0.75 -0.9
76,820 + MPMX19_04690 0.75 -0.9
76,820 + MPMX19_04690 0.75 -1.3
76,820 + MPMX19_04690 0.75 -1.8
76,820 + MPMX19_04690 0.75 +0.6
76,821 - MPMX19_04690 0.75 -0.3
76,821 - MPMX19_04690 0.75 -0.1
76,821 - MPMX19_04690 0.75 +0.1
76,821 - MPMX19_04690 0.75 -0.8
76,821 - MPMX19_04690 0.75 -1.1
76,821 - MPMX19_04690 0.75 -1.1
76,821 - MPMX19_04690 0.75 +0.3
76,821 - MPMX19_04690 0.75 +0.4
76,821 - MPMX19_04690 0.75 +0.7
77,101 + -1.0
77,101 + +0.1
77,102 - -1.5
77,253 + +0.2
77,708 + MPMX19_04691 0.56 -0.1
77,708 + MPMX19_04691 0.56 +0.8
77,708 + MPMX19_04691 0.56 +0.0
77,709 - MPMX19_04691 0.57 -0.1
77,780 + MPMX19_04691 0.66 +1.1
77,780 + MPMX19_04691 0.66 +0.3
77,780 + MPMX19_04691 0.66 +0.1
77,780 + MPMX19_04691 0.66 -0.3
77,780 + MPMX19_04691 0.66 -0.4
77,780 + MPMX19_04691 0.66 -0.1
77,780 + MPMX19_04691 0.66 -0.5
77,780 + MPMX19_04691 0.66 +0.2
77,780 + MPMX19_04691 0.66 -0.6
77,781 - MPMX19_04691 0.66 +0.5
77,781 - MPMX19_04691 0.66 -0.5
77,781 - MPMX19_04691 0.66 -1.0
77,781 - MPMX19_04691 0.66 -1.1
77,781 - MPMX19_04691 0.66 +0.5
77,781 - MPMX19_04691 0.66 +0.7
77,781 - MPMX19_04691 0.66 -0.4
77,781 - MPMX19_04691 0.66 +2.1
77,806 + MPMX19_04691 0.70 -0.5
77,828 + MPMX19_04691 0.73 +0.2
77,828 + MPMX19_04691 0.73 +0.5
77,829 - MPMX19_04691 0.73 +0.1
77,829 - MPMX19_04691 0.73 -0.6
77,829 - MPMX19_04691 0.73 +0.7
77,829 - MPMX19_04691 0.73 -1.1
77,829 - MPMX19_04691 0.73 -0.8
77,829 - MPMX19_04691 0.73 -1.9
77,829 - MPMX19_04691 0.73 -0.8
77,829 - MPMX19_04691 0.73 +0.5
78,042 + -0.3
78,042 + -0.5
78,168 - MPMX19_04692 0.28 +0.2
78,337 + MPMX19_04692 0.69 -1.0
78,337 + MPMX19_04692 0.69 -0.8
78,338 - MPMX19_04692 0.69 -1.1
78,338 - MPMX19_04692 0.69 -2.0
78,338 - MPMX19_04692 0.69 +0.2
78,347 + MPMX19_04692 0.71 -0.3
78,347 + MPMX19_04692 0.71 +1.7
78,347 + MPMX19_04692 0.71 +1.5
78,348 - MPMX19_04692 0.71 -0.9
78,348 - MPMX19_04692 0.71 -0.5
78,348 - MPMX19_04692 0.71 -1.1
78,348 - MPMX19_04692 0.71 -0.9
78,348 - MPMX19_04692 0.71 -0.5
78,348 - MPMX19_04692 0.71 +0.5
78,556 + MPMX19_04693 0.32 -0.4
78,556 + MPMX19_04693 0.32 +0.2
78,556 + MPMX19_04693 0.32 -0.3
78,557 - MPMX19_04693 0.33 -0.1
78,557 - MPMX19_04693 0.33 +0.5
78,613 + MPMX19_04693 0.52 +1.6
78,613 + MPMX19_04693 0.52 -1.5
78,613 + MPMX19_04693 0.52 +0.3
78,613 + MPMX19_04693 0.52 -0.2
78,613 + MPMX19_04693 0.52 -1.0
78,613 + MPMX19_04693 0.52 -1.1
78,614 - MPMX19_04693 0.53 +1.1
78,614 - MPMX19_04693 0.53 +0.4
78,614 - MPMX19_04693 0.53 +0.1
78,614 - MPMX19_04693 0.53 +2.1
78,614 - MPMX19_04693 0.53 -0.9
78,614 - MPMX19_04693 0.53 +0.1
78,614 - MPMX19_04693 0.53 -2.6
78,774 + +0.3
78,775 - +0.8
78,775 - -1.4
78,858 + MPMX19_04694 0.23 -1.2
78,858 + MPMX19_04694 0.23 -0.4
78,858 + MPMX19_04694 0.23 -1.1
78,858 + MPMX19_04694 0.23 -1.0
78,859 - MPMX19_04694 0.23 -0.6
78,859 - MPMX19_04694 0.23 -0.3
78,919 - MPMX19_04694 0.35 +0.1

Or see this region's nucleotide sequence