Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04688

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04687 and MPMX19_04688 overlap by 4 nucleotidesMPMX19_04688 and MPMX19_04689 are separated by 4 nucleotidesMPMX19_04689 and MPMX19_04690 are separated by 52 nucleotides MPMX19_04687: MPMX19_04687 - Atrazine chlorohydrolase, at 73,029 to 74,363 _04687 MPMX19_04688: MPMX19_04688 - Bicarbonate transport ATP-binding protein CmpD, at 74,360 to 75,178 _04688 MPMX19_04689: MPMX19_04689 - Putative aliphatic sulfonates transport permease protein SsuC, at 75,183 to 76,004 _04689 MPMX19_04690: MPMX19_04690 - hypothetical protein, at 76,057 to 77,073 _04690 Position (kb) 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1at 73.564 kb on + strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 74.095 kb on + strand, within MPMX19_04687at 74.096 kb on - strand, within MPMX19_04687at 74.096 kb on - strand, within MPMX19_04687at 74.820 kb on + strand, within MPMX19_04688at 74.820 kb on + strand, within MPMX19_04688at 74.820 kb on + strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 75.268 kb on + strand, within MPMX19_04689at 75.268 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.326 kb on - strand, within MPMX19_04689at 75.326 kb on - strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.347 kb on - strand, within MPMX19_04689at 75.758 kb on - strand, within MPMX19_04689at 76.077 kb on + strandat 76.109 kb on + strandat 76.109 kb on + strandat 76.110 kb on - strandat 76.154 kb on + strandat 76.154 kb on + strandat 76.154 kb on + strandat 76.154 kb on + strandat 76.155 kb on - strandat 76.155 kb on - strandat 76.155 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
73,564 + MPMX19_04687 0.40 +0.1
73,565 - MPMX19_04687 0.40 -3.0
73,565 - MPMX19_04687 0.40 +1.1
73,565 - MPMX19_04687 0.40 +0.7
73,565 - MPMX19_04687 0.40 -0.2
74,095 + MPMX19_04687 0.80 +0.2
74,096 - MPMX19_04687 0.80 -1.9
74,096 - MPMX19_04687 0.80 -0.3
74,820 + MPMX19_04688 0.56 -0.9
74,820 + MPMX19_04688 0.56 -0.6
74,820 + MPMX19_04688 0.56 -1.1
74,821 - MPMX19_04688 0.56 -0.3
74,821 - MPMX19_04688 0.56 -0.3
74,821 - MPMX19_04688 0.56 -0.9
74,821 - MPMX19_04688 0.56 -1.1
74,821 - MPMX19_04688 0.56 -0.4
74,821 - MPMX19_04688 0.56 -2.2
74,821 - MPMX19_04688 0.56 -0.8
74,821 - MPMX19_04688 0.56 -1.6
75,268 + MPMX19_04689 0.10 +0.4
75,268 + MPMX19_04689 0.10 -0.3
75,325 + MPMX19_04689 0.17 -1.8
75,325 + MPMX19_04689 0.17 +0.2
75,325 + MPMX19_04689 0.17 -0.8
75,326 - MPMX19_04689 0.17 -0.1
75,326 - MPMX19_04689 0.17 +1.2
75,328 + MPMX19_04689 0.18 -2.1
75,328 + MPMX19_04689 0.18 +1.6
75,328 + MPMX19_04689 0.18 -1.6
75,328 + MPMX19_04689 0.18 -1.0
75,328 + MPMX19_04689 0.18 -1.5
75,328 + MPMX19_04689 0.18 -0.9
75,328 + MPMX19_04689 0.18 -1.1
75,328 + MPMX19_04689 0.18 -0.3
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 -1.3
75,328 + MPMX19_04689 0.18 -1.3
75,328 + MPMX19_04689 0.18 +0.2
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 -1.4
75,328 + MPMX19_04689 0.18 -0.9
75,328 + MPMX19_04689 0.18 -0.6
75,328 + MPMX19_04689 0.18 +1.6
75,328 + MPMX19_04689 0.18 -1.0
75,328 + MPMX19_04689 0.18 -0.5
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 -1.0
75,328 + MPMX19_04689 0.18 -0.1
75,328 + MPMX19_04689 0.18 -0.8
75,328 + MPMX19_04689 0.18 -1.6
75,328 + MPMX19_04689 0.18 +0.9
75,328 + MPMX19_04689 0.18 -0.5
75,328 + MPMX19_04689 0.18 -0.9
75,329 - MPMX19_04689 0.18 -0.9
75,329 - MPMX19_04689 0.18 +0.1
75,329 - MPMX19_04689 0.18 -1.3
75,329 - MPMX19_04689 0.18 -0.9
75,329 - MPMX19_04689 0.18 -0.1
75,329 - MPMX19_04689 0.18 -0.1
75,329 - MPMX19_04689 0.18 +0.2
75,329 - MPMX19_04689 0.18 -2.8
75,329 - MPMX19_04689 0.18 -0.9
75,329 - MPMX19_04689 0.18 +0.4
75,329 - MPMX19_04689 0.18 -0.4
75,329 - MPMX19_04689 0.18 -1.6
75,329 - MPMX19_04689 0.18 -1.5
75,329 - MPMX19_04689 0.18 -0.5
75,329 - MPMX19_04689 0.18 -0.1
75,329 - MPMX19_04689 0.18 +1.3
75,329 - MPMX19_04689 0.18 +0.1
75,346 + MPMX19_04689 0.20 -1.2
75,346 + MPMX19_04689 0.20 +0.8
75,346 + MPMX19_04689 0.20 -0.1
75,347 - MPMX19_04689 0.20 -0.5
75,758 - MPMX19_04689 0.70 -1.1
76,077 + -0.4
76,109 + -0.3
76,109 + -1.5
76,110 - -0.5
76,154 + -0.5
76,154 + -0.1
76,154 + -1.8
76,154 + +0.6
76,155 - +0.7
76,155 - -0.4
76,155 - +0.3

Or see this region's nucleotide sequence