Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04681

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04679 and MPMX19_04680 are separated by 15 nucleotidesMPMX19_04680 and MPMX19_04681 are separated by 6 nucleotidesMPMX19_04681 and MPMX19_04682 are separated by 26 nucleotides MPMX19_04679: MPMX19_04679 - Spermidine/putrescine transport system permease protein PotB, at 65,315 to 66,172 _04679 MPMX19_04680: MPMX19_04680 - Inner membrane ABC transporter permease protein YdcV, at 66,188 to 67,024 _04680 MPMX19_04681: MPMX19_04681 - 5-hydroxyisourate hydrolase, at 67,031 to 67,384 _04681 MPMX19_04682: MPMX19_04682 - hypothetical protein, at 67,411 to 68,607 _04682 Position (kb) 67 68Strain fitness (log2 ratio) -2 -1 0 1at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.159 kb on - strandat 66.159 kb on - strandat 66.198 kb on - strandat 66.341 kb on + strand, within MPMX19_04680at 66.341 kb on + strand, within MPMX19_04680at 66.342 kb on - strand, within MPMX19_04680at 66.342 kb on - strand, within MPMX19_04680at 66.368 kb on + strand, within MPMX19_04680at 66.368 kb on + strand, within MPMX19_04680at 66.384 kb on - strand, within MPMX19_04680at 66.756 kb on - strand, within MPMX19_04680at 67.158 kb on + strand, within MPMX19_04681at 67.158 kb on + strand, within MPMX19_04681at 67.158 kb on + strand, within MPMX19_04681at 67.159 kb on - strand, within MPMX19_04681at 67.159 kb on - strand, within MPMX19_04681at 67.615 kb on + strand, within MPMX19_04682at 67.616 kb on - strand, within MPMX19_04682at 67.987 kb on + strand, within MPMX19_04682at 68.095 kb on + strand, within MPMX19_04682at 68.096 kb on - strand, within MPMX19_04682at 68.096 kb on - strand, within MPMX19_04682

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
66,032 + MPMX19_04679 0.84 +0.1
66,032 + MPMX19_04679 0.84 +1.2
66,032 + MPMX19_04679 0.84 +0.3
66,032 + MPMX19_04679 0.84 +0.1
66,032 + MPMX19_04679 0.84 -0.5
66,032 + MPMX19_04679 0.84 -0.8
66,032 + MPMX19_04679 0.84 -0.5
66,032 + MPMX19_04679 0.84 +0.4
66,032 + MPMX19_04679 0.84 -1.4
66,032 + MPMX19_04679 0.84 +0.2
66,032 + MPMX19_04679 0.84 -0.5
66,032 + MPMX19_04679 0.84 -0.6
66,032 + MPMX19_04679 0.84 -1.1
66,032 + MPMX19_04679 0.84 -0.9
66,032 + MPMX19_04679 0.84 -1.1
66,033 - MPMX19_04679 0.84 -1.3
66,033 - MPMX19_04679 0.84 +0.7
66,033 - MPMX19_04679 0.84 -1.3
66,033 - MPMX19_04679 0.84 -0.9
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 -1.8
66,033 - MPMX19_04679 0.84 -0.8
66,033 - MPMX19_04679 0.84 +0.5
66,033 - MPMX19_04679 0.84 -1.1
66,033 - MPMX19_04679 0.84 +0.8
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 -0.0
66,033 - MPMX19_04679 0.84 -0.3
66,038 + MPMX19_04679 0.84 +0.1
66,038 + MPMX19_04679 0.84 -0.5
66,038 + MPMX19_04679 0.84 -1.6
66,038 + MPMX19_04679 0.84 -1.1
66,038 + MPMX19_04679 0.84 +0.7
66,038 + MPMX19_04679 0.84 -1.3
66,038 + MPMX19_04679 0.84 +0.6
66,038 + MPMX19_04679 0.84 -0.8
66,038 + MPMX19_04679 0.84 +0.1
66,038 + MPMX19_04679 0.84 -0.3
66,039 - MPMX19_04679 0.84 -2.0
66,039 - MPMX19_04679 0.84 -0.2
66,039 - MPMX19_04679 0.84 -0.5
66,039 - MPMX19_04679 0.84 +1.5
66,039 - MPMX19_04679 0.84 -0.4
66,039 - MPMX19_04679 0.84 +0.5
66,039 - MPMX19_04679 0.84 -0.9
66,039 - MPMX19_04679 0.84 -0.3
66,039 - MPMX19_04679 0.84 -0.1
66,039 - MPMX19_04679 0.84 -1.0
66,039 - MPMX19_04679 0.84 +0.5
66,039 - MPMX19_04679 0.84 +0.1
66,039 - MPMX19_04679 0.84 -0.5
66,039 - MPMX19_04679 0.84 -0.2
66,039 - MPMX19_04679 0.84 -1.9
66,039 - MPMX19_04679 0.84 +0.7
66,159 - +0.6
66,159 - +1.1
66,198 - +0.2
66,341 + MPMX19_04680 0.18 -1.4
66,341 + MPMX19_04680 0.18 +0.5
66,342 - MPMX19_04680 0.18 -0.5
66,342 - MPMX19_04680 0.18 +0.9
66,368 + MPMX19_04680 0.22 -0.5
66,368 + MPMX19_04680 0.22 -0.4
66,384 - MPMX19_04680 0.23 -0.5
66,756 - MPMX19_04680 0.68 +0.3
67,158 + MPMX19_04681 0.36 -0.8
67,158 + MPMX19_04681 0.36 -0.9
67,158 + MPMX19_04681 0.36 -0.5
67,159 - MPMX19_04681 0.36 -1.6
67,159 - MPMX19_04681 0.36 -0.4
67,615 + MPMX19_04682 0.17 +0.7
67,616 - MPMX19_04682 0.17 +0.9
67,987 + MPMX19_04682 0.48 +0.9
68,095 + MPMX19_04682 0.57 -1.1
68,096 - MPMX19_04682 0.57 +1.1
68,096 - MPMX19_04682 0.57 +0.1

Or see this region's nucleotide sequence