Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04665

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04664 and MPMX19_04665 are separated by 374 nucleotidesMPMX19_04665 and MPMX19_04666 are separated by 29 nucleotidesMPMX19_04666 and MPMX19_04667 are separated by 154 nucleotides MPMX19_04664: MPMX19_04664 - hypothetical protein, at 51,019 to 51,903 _04664 MPMX19_04665: MPMX19_04665 - hypothetical protein, at 52,278 to 52,586 _04665 MPMX19_04666: MPMX19_04666 - hypothetical protein, at 52,616 to 53,212 _04666 MPMX19_04667: MPMX19_04667 - Acetyl-CoA acetyltransferase, at 53,367 to 54,566 _04667 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 51.437 kb on + strand, within MPMX19_04664at 51.438 kb on - strand, within MPMX19_04664at 51.438 kb on - strand, within MPMX19_04664at 51.438 kb on - strand, within MPMX19_04664at 51.438 kb on - strand, within MPMX19_04664at 51.476 kb on + strand, within MPMX19_04664at 51.476 kb on + strand, within MPMX19_04664at 51.476 kb on + strand, within MPMX19_04664at 51.477 kb on - strand, within MPMX19_04664at 51.477 kb on - strand, within MPMX19_04664at 51.696 kb on + strand, within MPMX19_04664at 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.864 kb on - strandat 51.980 kb on - strandat 51.988 kb on + strandat 51.992 kb on - strandat 52.057 kb on + strandat 52.057 kb on + strandat 52.057 kb on + strandat 52.057 kb on + strandat 52.057 kb on + strandat 52.057 kb on + strandat 52.057 kb on + strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.058 kb on - strandat 52.064 kb on + strandat 52.064 kb on + strandat 52.064 kb on + strandat 52.064 kb on + strandat 52.064 kb on + strandat 52.065 kb on - strandat 52.065 kb on - strandat 52.065 kb on - strandat 52.065 kb on - strandat 52.065 kb on - strandat 52.065 kb on - strandat 52.145 kb on + strandat 52.145 kb on + strandat 52.145 kb on + strandat 52.146 kb on - strandat 52.146 kb on - strandat 52.146 kb on - strandat 52.146 kb on - strandat 52.244 kb on + strandat 52.244 kb on + strandat 52.245 kb on - strandat 52.245 kb on - strandat 52.245 kb on - strandat 52.317 kb on + strand, within MPMX19_04665at 52.317 kb on + strand, within MPMX19_04665at 52.317 kb on + strand, within MPMX19_04665at 52.317 kb on + strand, within MPMX19_04665at 52.317 kb on + strand, within MPMX19_04665at 52.318 kb on - strand, within MPMX19_04665at 52.318 kb on - strand, within MPMX19_04665at 52.318 kb on - strand, within MPMX19_04665at 52.318 kb on - strand, within MPMX19_04665at 52.318 kb on - strand, within MPMX19_04665at 52.410 kb on + strand, within MPMX19_04665at 52.410 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.455 kb on + strand, within MPMX19_04665at 52.456 kb on - strand, within MPMX19_04665at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.938 kb on + strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 52.939 kb on - strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.070 kb on + strand, within MPMX19_04666at 53.071 kb on - strand, within MPMX19_04666at 53.071 kb on - strand, within MPMX19_04666at 53.071 kb on - strand, within MPMX19_04666

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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51,437 + MPMX19_04664 0.47 -0.9
51,438 - MPMX19_04664 0.47 -0.3
51,438 - MPMX19_04664 0.47 -2.3
51,438 - MPMX19_04664 0.47 -1.0
51,438 - MPMX19_04664 0.47 +0.2
51,476 + MPMX19_04664 0.52 -1.3
51,476 + MPMX19_04664 0.52 -1.8
51,476 + MPMX19_04664 0.52 -0.9
51,477 - MPMX19_04664 0.52 -2.5
51,477 - MPMX19_04664 0.52 +0.2
51,696 + MPMX19_04664 0.76 -1.5
51,863 + +0.7
51,863 + -0.3
51,863 + -1.6
51,863 + -2.1
51,863 + +0.4
51,863 + +1.1
51,863 + -1.2
51,863 + -0.5
51,863 + -1.3
51,863 + -0.1
51,863 + +0.0
51,863 + -1.9
51,863 + -0.4
51,864 - -0.2
51,864 - -1.4
51,864 - -0.8
51,864 - -1.5
51,864 - +0.4
51,864 - -0.7
51,864 - +0.1
51,864 - -0.5
51,864 - -0.6
51,980 - -0.4
51,988 + +1.1
51,992 - -1.3
52,057 + -0.3
52,057 + +0.1
52,057 + -0.4
52,057 + -1.0
52,057 + -0.4
52,057 + -0.9
52,057 + -1.6
52,058 - -1.6
52,058 - +0.1
52,058 - +1.1
52,058 - +1.1
52,058 - -0.6
52,058 - +0.6
52,058 - +0.2
52,058 - +0.5
52,064 + -1.1
52,064 + -0.1
52,064 + +0.3
52,064 + -0.8
52,064 + -1.1
52,065 - +0.2
52,065 - -1.5
52,065 - -0.0
52,065 - +1.4
52,065 - +0.2
52,065 - -0.8
52,145 + -0.9
52,145 + +0.2
52,145 + -1.6
52,146 - -0.9
52,146 - +0.1
52,146 - -0.8
52,146 - +0.7
52,244 + -0.9
52,244 + -0.5
52,245 - +1.1
52,245 - -0.6
52,245 - -0.9
52,317 + MPMX19_04665 0.13 -1.8
52,317 + MPMX19_04665 0.13 +0.6
52,317 + MPMX19_04665 0.13 -1.8
52,317 + MPMX19_04665 0.13 -0.5
52,317 + MPMX19_04665 0.13 +0.4
52,318 - MPMX19_04665 0.13 -0.8
52,318 - MPMX19_04665 0.13 +0.6
52,318 - MPMX19_04665 0.13 +1.9
52,318 - MPMX19_04665 0.13 +1.1
52,318 - MPMX19_04665 0.13 +0.4
52,410 + MPMX19_04665 0.43 +0.3
52,410 + MPMX19_04665 0.43 -0.3
52,455 + MPMX19_04665 0.57 -0.8
52,455 + MPMX19_04665 0.57 -0.3
52,455 + MPMX19_04665 0.57 -0.5
52,455 + MPMX19_04665 0.57 -0.9
52,455 + MPMX19_04665 0.57 -0.2
52,455 + MPMX19_04665 0.57 -0.8
52,455 + MPMX19_04665 0.57 -0.9
52,455 + MPMX19_04665 0.57 -1.4
52,456 - MPMX19_04665 0.58 -1.2
52,938 + MPMX19_04666 0.54 -0.9
52,938 + MPMX19_04666 0.54 -0.3
52,938 + MPMX19_04666 0.54 +0.2
52,938 + MPMX19_04666 0.54 -0.3
52,938 + MPMX19_04666 0.54 -0.0
52,938 + MPMX19_04666 0.54 +0.3
52,938 + MPMX19_04666 0.54 +0.1
52,938 + MPMX19_04666 0.54 -1.1
52,938 + MPMX19_04666 0.54 -2.3
52,938 + MPMX19_04666 0.54 -1.1
52,938 + MPMX19_04666 0.54 +0.7
52,938 + MPMX19_04666 0.54 -0.5
52,938 + MPMX19_04666 0.54 -0.4
52,938 + MPMX19_04666 0.54 -1.4
52,938 + MPMX19_04666 0.54 +1.7
52,938 + MPMX19_04666 0.54 -0.7
52,939 - MPMX19_04666 0.54 -0.1
52,939 - MPMX19_04666 0.54 -0.4
52,939 - MPMX19_04666 0.54 +1.5
52,939 - MPMX19_04666 0.54 -0.4
52,939 - MPMX19_04666 0.54 -0.2
52,939 - MPMX19_04666 0.54 -2.2
52,939 - MPMX19_04666 0.54 -1.8
52,939 - MPMX19_04666 0.54 +0.6
52,939 - MPMX19_04666 0.54 +0.1
52,939 - MPMX19_04666 0.54 +1.3
52,939 - MPMX19_04666 0.54 -0.6
52,939 - MPMX19_04666 0.54 -0.6
52,939 - MPMX19_04666 0.54 -0.2
53,070 + MPMX19_04666 0.76 -1.6
53,070 + MPMX19_04666 0.76 -1.1
53,070 + MPMX19_04666 0.76 -0.9
53,070 + MPMX19_04666 0.76 -2.9
53,071 - MPMX19_04666 0.76 -2.5
53,071 - MPMX19_04666 0.76 +0.4
53,071 - MPMX19_04666 0.76 -0.5

Or see this region's nucleotide sequence