Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04650 and MPMX19_04651 are separated by 53 nucleotides MPMX19_04651 and MPMX19_04652 are separated by 2 nucleotides MPMX19_04652 and MPMX19_04653 overlap by 4 nucleotides
MPMX19_04650: MPMX19_04650 - Polyphosphate:AMP phosphotransferase, at 35,214 to 36,029
_04650
MPMX19_04651: MPMX19_04651 - 3-isopropylmalate dehydratase small subunit 1, at 36,083 to 36,682
_04651
MPMX19_04652: MPMX19_04652 - 3-isopropylmalate dehydratase large subunit, at 36,685 to 38,106
_04652
MPMX19_04653: MPMX19_04653 - Fumarate reductase flavoprotein subunit, at 38,103 to 39,527
_04653
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.760 kb on + strand, within MPMX19_04650 at 35.760 kb on + strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 36.016 kb on + strand at 36.017 kb on - strand at 36.027 kb on + strand at 36.084 kb on + strand at 36.331 kb on + strand, within MPMX19_04651 at 36.331 kb on + strand, within MPMX19_04651 at 36.332 kb on - strand, within MPMX19_04651 at 36.332 kb on - strand, within MPMX19_04651 at 36.388 kb on + strand, within MPMX19_04651 at 36.388 kb on + strand, within MPMX19_04651 at 36.389 kb on - strand, within MPMX19_04651 at 36.389 kb on - strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.571 kb on - strand, within MPMX19_04651 at 36.706 kb on + strand at 36.706 kb on + strand at 36.706 kb on + strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.494 kb on - strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 38.123 kb on + strand at 38.124 kb on - strand at 38.198 kb on - strand at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.423 kb on + strand, within MPMX19_04653 at 38.424 kb on - strand, within MPMX19_04653 at 38.424 kb on - strand, within MPMX19_04653 at 38.642 kb on - strand, within MPMX19_04653 at 38.842 kb on + strand, within MPMX19_04653 at 38.842 kb on + strand, within MPMX19_04653 at 38.842 kb on + strand, within MPMX19_04653 at 38.843 kb on - strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 35,760 + MPMX19_04650 0.67 -0.2 35,760 + MPMX19_04650 0.67 -0.3 35,761 - MPMX19_04650 0.67 +0.3 35,761 - MPMX19_04650 0.67 +0.6 35,761 - MPMX19_04650 0.67 -0.3 35,761 - MPMX19_04650 0.67 +0.1 35,817 + MPMX19_04650 0.74 +0.1 35,817 + MPMX19_04650 0.74 +2.1 35,817 + MPMX19_04650 0.74 -0.9 35,817 + MPMX19_04650 0.74 -0.3 35,817 + MPMX19_04650 0.74 -0.3 35,817 + MPMX19_04650 0.74 -0.8 35,817 + MPMX19_04650 0.74 +0.8 35,817 + MPMX19_04650 0.74 -0.1 35,817 + MPMX19_04650 0.74 -0.3 35,817 + MPMX19_04650 0.74 -2.1 35,818 - MPMX19_04650 0.74 -1.6 35,818 - MPMX19_04650 0.74 +0.8 35,818 - MPMX19_04650 0.74 +0.5 35,818 - MPMX19_04650 0.74 +0.2 35,818 - MPMX19_04650 0.74 +0.1 36,016 + -1.2 36,017 - +0.1 36,027 + -0.4 36,084 + -1.8 36,331 + MPMX19_04651 0.41 -1.1 36,331 + MPMX19_04651 0.41 +0.1 36,332 - MPMX19_04651 0.41 +0.5 36,332 - MPMX19_04651 0.41 -0.4 36,388 + MPMX19_04651 0.51 +0.6 36,388 + MPMX19_04651 0.51 -2.0 36,389 - MPMX19_04651 0.51 -2.6 36,389 - MPMX19_04651 0.51 -0.1 36,441 + MPMX19_04651 0.60 -0.3 36,441 + MPMX19_04651 0.60 -1.3 36,441 + MPMX19_04651 0.60 +1.3 36,441 + MPMX19_04651 0.60 -1.5 36,441 + MPMX19_04651 0.60 -0.5 36,441 + MPMX19_04651 0.60 -0.6 36,441 + MPMX19_04651 0.60 -1.1 36,441 + MPMX19_04651 0.60 +0.3 36,441 + MPMX19_04651 0.60 +1.2 36,442 - MPMX19_04651 0.60 +0.7 36,442 - MPMX19_04651 0.60 -1.5 36,442 - MPMX19_04651 0.60 +0.6 36,442 - MPMX19_04651 0.60 +0.2 36,442 - MPMX19_04651 0.60 +0.2 36,442 - MPMX19_04651 0.60 -0.2 36,442 - MPMX19_04651 0.60 -0.9 36,510 + MPMX19_04651 0.71 +1.8 36,510 + MPMX19_04651 0.71 -1.3 36,510 + MPMX19_04651 0.71 -0.2 36,510 + MPMX19_04651 0.71 -1.4 36,510 + MPMX19_04651 0.71 -0.1 36,510 + MPMX19_04651 0.71 -0.9 36,510 + MPMX19_04651 0.71 -2.1 36,511 - MPMX19_04651 0.71 +0.7 36,511 - MPMX19_04651 0.71 -0.1 36,511 - MPMX19_04651 0.71 +0.6 36,511 - MPMX19_04651 0.71 -1.0 36,511 - MPMX19_04651 0.71 -0.8 36,511 - MPMX19_04651 0.71 -1.1 36,511 - MPMX19_04651 0.71 -0.8 36,511 - MPMX19_04651 0.71 +0.4 36,511 - MPMX19_04651 0.71 +0.2 36,511 - MPMX19_04651 0.71 -1.1 36,571 - MPMX19_04651 0.81 -1.2 36,706 + -0.5 36,706 + -0.8 36,706 + -0.8 36,707 - -2.4 36,707 - -1.3 36,707 - +0.7 36,707 - -0.5 36,707 - +0.5 36,707 - -1.4 36,707 - -0.9 37,127 + MPMX19_04652 0.31 +1.8 37,127 + MPMX19_04652 0.31 -0.9 37,127 + MPMX19_04652 0.31 -1.9 37,127 + MPMX19_04652 0.31 -0.1 37,127 + MPMX19_04652 0.31 -0.9 37,127 + MPMX19_04652 0.31 -0.8 37,127 + MPMX19_04652 0.31 -1.1 37,127 + MPMX19_04652 0.31 +1.2 37,127 + MPMX19_04652 0.31 +1.6 37,127 + MPMX19_04652 0.31 -1.4 37,127 + MPMX19_04652 0.31 -0.8 37,127 + MPMX19_04652 0.31 -0.5 37,128 - MPMX19_04652 0.31 -1.3 37,128 - MPMX19_04652 0.31 -0.4 37,128 - MPMX19_04652 0.31 -0.5 37,128 - MPMX19_04652 0.31 +0.7 37,128 - MPMX19_04652 0.31 +0.1 37,128 - MPMX19_04652 0.31 -0.4 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 +0.2 37,128 - MPMX19_04652 0.31 +1.5 37,128 - MPMX19_04652 0.31 -0.3 37,128 - MPMX19_04652 0.31 -1.4 37,128 - MPMX19_04652 0.31 +0.8 37,128 - MPMX19_04652 0.31 -0.6 37,128 - MPMX19_04652 0.31 +0.7 37,494 - MPMX19_04652 0.57 -1.3 37,910 + MPMX19_04652 0.86 +0.5 37,910 + MPMX19_04652 0.86 +1.1 37,910 + MPMX19_04652 0.86 -0.6 37,910 + MPMX19_04652 0.86 -0.9 37,910 + MPMX19_04652 0.86 -1.9 37,910 + MPMX19_04652 0.86 +0.2 37,910 + MPMX19_04652 0.86 +0.5 37,910 + MPMX19_04652 0.86 +0.6 37,910 + MPMX19_04652 0.86 -1.1 37,910 + MPMX19_04652 0.86 +0.7 37,911 - MPMX19_04652 0.86 +1.3 37,911 - MPMX19_04652 0.86 +0.4 37,911 - MPMX19_04652 0.86 +0.2 37,911 - MPMX19_04652 0.86 +1.1 37,911 - MPMX19_04652 0.86 +0.2 37,911 - MPMX19_04652 0.86 +0.8 37,911 - MPMX19_04652 0.86 +1.0 37,911 - MPMX19_04652 0.86 +0.4 37,911 - MPMX19_04652 0.86 -1.8 38,123 + +0.9 38,124 - -1.2 38,198 - -2.2 38,248 + MPMX19_04653 0.10 -0.3 38,248 + MPMX19_04653 0.10 -1.1 38,248 + MPMX19_04653 0.10 +0.0 38,248 + MPMX19_04653 0.10 +0.2 38,248 + MPMX19_04653 0.10 -0.9 38,248 + MPMX19_04653 0.10 -0.4 38,249 - MPMX19_04653 0.10 -0.5 38,249 - MPMX19_04653 0.10 -1.0 38,249 - MPMX19_04653 0.10 -2.9 38,249 - MPMX19_04653 0.10 +0.2 38,249 - MPMX19_04653 0.10 -0.9 38,249 - MPMX19_04653 0.10 +1.4 38,249 - MPMX19_04653 0.10 -0.0 38,249 - MPMX19_04653 0.10 -0.1 38,249 - MPMX19_04653 0.10 -0.7 38,423 + MPMX19_04653 0.22 -1.1 38,424 - MPMX19_04653 0.23 -0.8 38,424 - MPMX19_04653 0.23 -0.9 38,642 - MPMX19_04653 0.38 -0.9 38,842 + MPMX19_04653 0.52 -1.0 38,842 + MPMX19_04653 0.52 -1.0 38,842 + MPMX19_04653 0.52 -0.1 38,843 - MPMX19_04653 0.52 -1.3 38,899 + MPMX19_04653 0.56 -1.3 38,899 + MPMX19_04653 0.56 -1.1 38,899 + MPMX19_04653 0.56 -0.2 38,899 + MPMX19_04653 0.56 +0.4 38,899 + MPMX19_04653 0.56 -0.7
Or see this region's nucleotide sequence