Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04637 and MPMX19_04638 are separated by 10 nucleotides MPMX19_04638 and MPMX19_04639 are separated by 342 nucleotides
MPMX19_04637: MPMX19_04637 - hypothetical protein, at 15,548 to 17,251
_04637
MPMX19_04638: MPMX19_04638 - D-inositol-3-phosphate glycosyltransferase, at 17,262 to 18,464
_04638
MPMX19_04639: MPMX19_04639 - hypothetical protein, at 18,807 to 21,578
_04639
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.290 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.329 kb on - strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.609 kb on - strand, within MPMX19_04637 at 16.609 kb on - strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.677 kb on + strand, within MPMX19_04637 at 16.677 kb on + strand, within MPMX19_04637 at 16.677 kb on + strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.970 kb on + strand, within MPMX19_04637 at 17.341 kb on + strand at 17.341 kb on + strand at 17.341 kb on + strand at 17.341 kb on + strand at 17.342 kb on - strand at 17.342 kb on - strand at 17.342 kb on - strand at 17.590 kb on + strand, within MPMX19_04638 at 17.591 kb on - strand, within MPMX19_04638 at 18.031 kb on + strand, within MPMX19_04638 at 18.031 kb on + strand, within MPMX19_04638 at 18.031 kb on + strand, within MPMX19_04638 at 18.032 kb on - strand, within MPMX19_04638 at 18.032 kb on - strand, within MPMX19_04638 at 18.044 kb on - strand, within MPMX19_04638 at 18.431 kb on + strand at 18.431 kb on + strand at 18.432 kb on - strand at 18.432 kb on - strand at 18.432 kb on - strand at 18.560 kb on + strand at 18.561 kb on - strand at 18.583 kb on - strand at 18.780 kb on - strand at 18.793 kb on + strand at 18.957 kb on + strand at 19.011 kb on + strand at 19.012 kb on - strand at 19.012 kb on - strand at 19.012 kb on - strand at 19.012 kb on - strand at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.167 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 16,290 + MPMX19_04637 0.44 +0.6 16,328 + MPMX19_04637 0.46 -1.4 16,328 + MPMX19_04637 0.46 -1.4 16,328 + MPMX19_04637 0.46 -1.5 16,329 - MPMX19_04637 0.46 -1.5 16,595 + MPMX19_04637 0.61 -0.5 16,595 + MPMX19_04637 0.61 -0.4 16,595 + MPMX19_04637 0.61 +0.1 16,595 + MPMX19_04637 0.61 -2.2 16,595 + MPMX19_04637 0.61 -0.1 16,595 + MPMX19_04637 0.61 -0.4 16,595 + MPMX19_04637 0.61 -0.8 16,595 + MPMX19_04637 0.61 -2.6 16,595 + MPMX19_04637 0.61 -0.5 16,595 + MPMX19_04637 0.61 +0.1 16,596 - MPMX19_04637 0.62 +0.2 16,596 - MPMX19_04637 0.62 -1.4 16,596 - MPMX19_04637 0.62 +0.1 16,596 - MPMX19_04637 0.62 -0.9 16,609 - MPMX19_04637 0.62 -0.5 16,609 - MPMX19_04637 0.62 +0.2 16,640 + MPMX19_04637 0.64 -1.0 16,640 + MPMX19_04637 0.64 -0.3 16,640 + MPMX19_04637 0.64 -0.1 16,640 + MPMX19_04637 0.64 -0.9 16,640 + MPMX19_04637 0.64 -2.4 16,641 - MPMX19_04637 0.64 +0.4 16,641 - MPMX19_04637 0.64 -1.5 16,641 - MPMX19_04637 0.64 -0.5 16,641 - MPMX19_04637 0.64 -2.3 16,677 + MPMX19_04637 0.66 -0.2 16,677 + MPMX19_04637 0.66 -0.5 16,677 + MPMX19_04637 0.66 +0.8 16,678 - MPMX19_04637 0.66 -2.4 16,678 - MPMX19_04637 0.66 +0.5 16,678 - MPMX19_04637 0.66 -0.5 16,678 - MPMX19_04637 0.66 -0.9 16,678 - MPMX19_04637 0.66 -1.9 16,970 + MPMX19_04637 0.83 +0.8 17,341 + -0.6 17,341 + -0.4 17,341 + -1.7 17,341 + +0.1 17,342 - -0.9 17,342 - +0.2 17,342 - -2.6 17,590 + MPMX19_04638 0.27 -0.9 17,591 - MPMX19_04638 0.27 +1.2 18,031 + MPMX19_04638 0.64 -0.3 18,031 + MPMX19_04638 0.64 -1.4 18,031 + MPMX19_04638 0.64 -1.3 18,032 - MPMX19_04638 0.64 -0.9 18,032 - MPMX19_04638 0.64 -1.4 18,044 - MPMX19_04638 0.65 -2.0 18,431 + -0.3 18,431 + +1.2 18,432 - -0.2 18,432 - -0.9 18,432 - -0.8 18,560 + -0.5 18,561 - +0.5 18,583 - -1.1 18,780 - -1.1 18,793 + -1.0 18,957 + -1.3 19,011 + -0.7 19,012 - -1.5 19,012 - -0.7 19,012 - -0.0 19,012 - -1.1 19,113 + MPMX19_04639 0.11 +0.2 19,113 + MPMX19_04639 0.11 -0.0 19,113 + MPMX19_04639 0.11 -1.2 19,113 + MPMX19_04639 0.11 +0.9 19,113 + MPMX19_04639 0.11 -0.9 19,113 + MPMX19_04639 0.11 +0.4 19,113 + MPMX19_04639 0.11 -0.9 19,113 + MPMX19_04639 0.11 -1.3 19,113 + MPMX19_04639 0.11 -1.3 19,113 + MPMX19_04639 0.11 -0.8 19,113 + MPMX19_04639 0.11 -0.9 19,114 - MPMX19_04639 0.11 -0.1 19,114 - MPMX19_04639 0.11 -0.7 19,114 - MPMX19_04639 0.11 -0.9 19,114 - MPMX19_04639 0.11 +0.3 19,114 - MPMX19_04639 0.11 -1.8 19,114 - MPMX19_04639 0.11 +1.1 19,114 - MPMX19_04639 0.11 -0.8 19,114 - MPMX19_04639 0.11 -0.9 19,114 - MPMX19_04639 0.11 +0.4 19,114 - MPMX19_04639 0.11 -2.3 19,114 - MPMX19_04639 0.11 -0.3 19,114 - MPMX19_04639 0.11 -0.7 19,167 + MPMX19_04639 0.13 -0.3 19,395 + MPMX19_04639 0.21 -0.4 19,395 + MPMX19_04639 0.21 +0.5 19,395 + MPMX19_04639 0.21 +0.1 19,395 + MPMX19_04639 0.21 +2.1 19,396 - MPMX19_04639 0.21 +0.6 19,396 - MPMX19_04639 0.21 +0.5 19,396 - MPMX19_04639 0.21 +0.0 19,396 - MPMX19_04639 0.21 -1.9 19,449 + MPMX19_04639 0.23 -2.1 19,449 + MPMX19_04639 0.23 +0.3 19,449 + MPMX19_04639 0.23 -0.2 19,449 + MPMX19_04639 0.23 -0.0 19,449 + MPMX19_04639 0.23 -1.6 19,449 + MPMX19_04639 0.23 -0.9
Or see this region's nucleotide sequence