Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04595 and MPMX19_04596 are separated by 137 nucleotides MPMX19_04596 and MPMX19_04597 overlap by 4 nucleotides
MPMX19_04595: MPMX19_04595 - Inner membrane protein CreD, at 978,814 to 980,190
_04595
MPMX19_04596: MPMX19_04596 - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP, at 980,328 to 981,020
_04596
MPMX19_04597: MPMX19_04597 - Adaptive-response sensory-kinase SasA, at 981,017 to 982,657
_04597
Position (kb) 980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 979.346 kb on + strand, within MPMX19_04595 at 979.346 kb on + strand, within MPMX19_04595 at 979.811 kb on + strand, within MPMX19_04595 at 979.812 kb on - strand, within MPMX19_04595 at 979.898 kb on + strand, within MPMX19_04595 at 979.928 kb on + strand, within MPMX19_04595 at 979.928 kb on + strand, within MPMX19_04595 at 979.928 kb on + strand, within MPMX19_04595 at 979.929 kb on - strand, within MPMX19_04595 at 979.929 kb on - strand, within MPMX19_04595 at 980.010 kb on + strand, within MPMX19_04595 at 980.140 kb on + strand at 980.140 kb on + strand at 980.141 kb on - strand at 980.141 kb on - strand at 980.313 kb on + strand at 980.313 kb on + strand at 980.314 kb on - strand at 980.314 kb on - strand at 980.619 kb on + strand, within MPMX19_04596 at 980.619 kb on + strand, within MPMX19_04596 at 980.619 kb on + strand, within MPMX19_04596 at 980.620 kb on - strand, within MPMX19_04596 at 980.620 kb on - strand, within MPMX19_04596 at 980.883 kb on + strand, within MPMX19_04596 at 980.883 kb on + strand, within MPMX19_04596 at 980.884 kb on - strand, within MPMX19_04596 at 980.884 kb on - strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.898 kb on + strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.899 kb on - strand, within MPMX19_04596 at 980.997 kb on + strand at 980.997 kb on + strand at 980.998 kb on - strand at 980.998 kb on - strand at 981.206 kb on + strand, within MPMX19_04597 at 981.206 kb on + strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.207 kb on - strand, within MPMX19_04597 at 981.770 kb on + strand, within MPMX19_04597 at 981.771 kb on - strand, within MPMX19_04597 at 981.771 kb on - strand, within MPMX19_04597 at 982.013 kb on + strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597 at 982.014 kb on - strand, within MPMX19_04597
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 979,346 + MPMX19_04595 0.39 -0.0 979,346 + MPMX19_04595 0.39 +0.4 979,811 + MPMX19_04595 0.72 +0.4 979,812 - MPMX19_04595 0.72 -2.9 979,898 + MPMX19_04595 0.79 -1.6 979,928 + MPMX19_04595 0.81 -1.1 979,928 + MPMX19_04595 0.81 +0.2 979,928 + MPMX19_04595 0.81 -1.8 979,929 - MPMX19_04595 0.81 -0.2 979,929 - MPMX19_04595 0.81 -1.6 980,010 + MPMX19_04595 0.87 -0.3 980,140 + -0.8 980,140 + +1.6 980,141 - -1.0 980,141 - -0.1 980,313 + +0.4 980,313 + -0.4 980,314 - +0.4 980,314 - -2.2 980,619 + MPMX19_04596 0.42 -1.3 980,619 + MPMX19_04596 0.42 +0.5 980,619 + MPMX19_04596 0.42 +0.2 980,620 - MPMX19_04596 0.42 +0.2 980,620 - MPMX19_04596 0.42 -0.6 980,883 + MPMX19_04596 0.80 -0.3 980,883 + MPMX19_04596 0.80 -1.0 980,884 - MPMX19_04596 0.80 -0.6 980,884 - MPMX19_04596 0.80 -0.1 980,898 + MPMX19_04596 0.82 -1.1 980,898 + MPMX19_04596 0.82 -1.4 980,898 + MPMX19_04596 0.82 -0.8 980,898 + MPMX19_04596 0.82 -0.3 980,898 + MPMX19_04596 0.82 -1.4 980,898 + MPMX19_04596 0.82 -0.1 980,899 - MPMX19_04596 0.82 -0.6 980,899 - MPMX19_04596 0.82 -1.3 980,899 - MPMX19_04596 0.82 -0.4 980,899 - MPMX19_04596 0.82 -2.9 980,899 - MPMX19_04596 0.82 +0.6 980,899 - MPMX19_04596 0.82 -0.4 980,997 + -1.4 980,997 + +0.7 980,998 - -0.2 980,998 - -0.1 981,206 + MPMX19_04597 0.12 -0.1 981,206 + MPMX19_04597 0.12 +1.0 981,207 - MPMX19_04597 0.12 -0.4 981,207 - MPMX19_04597 0.12 -1.9 981,207 - MPMX19_04597 0.12 -0.0 981,207 - MPMX19_04597 0.12 -0.8 981,770 + MPMX19_04597 0.46 -1.0 981,771 - MPMX19_04597 0.46 -0.8 981,771 - MPMX19_04597 0.46 -1.5 982,013 + MPMX19_04597 0.61 -1.9 982,014 - MPMX19_04597 0.61 +0.5 982,014 - MPMX19_04597 0.61 -1.0 982,014 - MPMX19_04597 0.61 +0.5 982,014 - MPMX19_04597 0.61 -0.1 982,014 - MPMX19_04597 0.61 -0.7 982,014 - MPMX19_04597 0.61 -0.4 982,014 - MPMX19_04597 0.61 +0.0 982,014 - MPMX19_04597 0.61 +0.3
Or see this region's nucleotide sequence