Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04572

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04570 and MPMX19_04571 are separated by 323 nucleotidesMPMX19_04571 and MPMX19_04572 are separated by 118 nucleotidesMPMX19_04572 and MPMX19_04573 are separated by 12 nucleotidesMPMX19_04573 and MPMX19_04574 are separated by 23 nucleotides MPMX19_04570: MPMX19_04570 - ECF RNA polymerase sigma factor SigF, at 948,872 to 949,429 _04570 MPMX19_04571: MPMX19_04571 - hypothetical protein, at 949,753 to 950,238 _04571 MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010 _04572 MPMX19_04573: MPMX19_04573 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 951,023 to 951,814 _04573 MPMX19_04574: MPMX19_04574 - hypothetical protein, at 951,838 to 953,844 _04574 Position (kb) 950 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 949.384 kb on + strandat 949.384 kb on + strandat 949.385 kb on - strandat 949.385 kb on - strandat 949.385 kb on - strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.557 kb on - strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.607 kb on - strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.630 kb on - strandat 949.630 kb on - strandat 949.630 kb on - strandat 949.647 kb on + strandat 949.648 kb on - strandat 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.514 kb on + strand, within MPMX19_04572at 950.515 kb on - strand, within MPMX19_04572at 950.582 kb on + strand, within MPMX19_04572at 950.582 kb on + strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.635 kb on - strand, within MPMX19_04572at 950.635 kb on - strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.709 kb on - strand, within MPMX19_04572at 950.709 kb on - strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.825 kb on + strand, within MPMX19_04572at 950.825 kb on + strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.330 kb on - strand, within MPMX19_04573at 951.330 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.588 kb on - strand, within MPMX19_04573at 951.647 kb on + strand, within MPMX19_04573at 951.647 kb on + strand, within MPMX19_04573at 951.648 kb on - strand, within MPMX19_04573at 951.761 kb on + strandat 951.761 kb on + strandat 951.761 kb on + strandat 951.761 kb on + strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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949,384 + +1.4
949,384 + -0.6
949,385 - +1.1
949,385 - -1.6
949,385 - -0.6
949,479 + +0.2
949,479 + +1.2
949,479 + -1.4
949,479 + -0.4
949,479 + +0.6
949,479 + -1.3
949,479 + -0.7
949,479 + +2.8
949,479 + -1.5
949,479 + -1.0
949,479 + -0.6
949,480 - -0.1
949,480 - -0.4
949,480 - -0.3
949,480 - +0.2
949,480 - -1.7
949,480 - -0.0
949,480 - -1.5
949,480 - -0.6
949,480 - -0.2
949,480 - -0.5
949,557 - -1.7
949,606 + +1.2
949,606 + -0.3
949,606 + -0.5
949,606 + -0.1
949,606 + -0.8
949,607 - -0.6
949,629 + -0.1
949,629 + +1.2
949,629 + -0.1
949,629 + +0.2
949,630 - -0.1
949,630 - -0.1
949,630 - -0.7
949,647 + -1.2
949,648 - -0.6
950,007 + MPMX19_04571 0.52 -0.6
950,007 + MPMX19_04571 0.52 +0.8
950,007 + MPMX19_04571 0.52 -0.8
950,007 + MPMX19_04571 0.52 +0.2
950,007 + MPMX19_04571 0.52 -0.1
950,008 - MPMX19_04571 0.52 -2.1
950,008 - MPMX19_04571 0.52 -3.2
950,008 - MPMX19_04571 0.52 -0.5
950,456 + MPMX19_04572 0.15 -0.5
950,456 + MPMX19_04572 0.15 -1.1
950,456 + MPMX19_04572 0.15 +0.3
950,456 + MPMX19_04572 0.15 -2.6
950,457 - MPMX19_04572 0.15 -0.7
950,457 - MPMX19_04572 0.15 -0.7
950,457 - MPMX19_04572 0.15 +0.3
950,457 - MPMX19_04572 0.15 +1.6
950,514 + MPMX19_04572 0.24 +0.6
950,515 - MPMX19_04572 0.24 -0.4
950,582 + MPMX19_04572 0.34 +1.3
950,582 + MPMX19_04572 0.34 -2.6
950,583 - MPMX19_04572 0.35 -0.1
950,583 - MPMX19_04572 0.35 -0.1
950,583 - MPMX19_04572 0.35 +1.6
950,591 + MPMX19_04572 0.36 -0.3
950,591 + MPMX19_04572 0.36 +1.0
950,591 + MPMX19_04572 0.36 -1.3
950,591 + MPMX19_04572 0.36 +0.2
950,591 + MPMX19_04572 0.36 -0.4
950,591 + MPMX19_04572 0.36 -0.6
950,592 - MPMX19_04572 0.36 -0.4
950,592 - MPMX19_04572 0.36 +0.0
950,592 - MPMX19_04572 0.36 -1.3
950,592 - MPMX19_04572 0.36 -0.3
950,592 - MPMX19_04572 0.36 +0.2
950,634 + MPMX19_04572 0.42 +0.6
950,634 + MPMX19_04572 0.42 -0.3
950,634 + MPMX19_04572 0.42 -0.5
950,634 + MPMX19_04572 0.42 -0.8
950,635 - MPMX19_04572 0.43 +0.7
950,635 - MPMX19_04572 0.43 -1.3
950,708 + MPMX19_04572 0.54 +1.3
950,708 + MPMX19_04572 0.54 -0.6
950,708 + MPMX19_04572 0.54 -0.3
950,709 - MPMX19_04572 0.54 -0.8
950,709 - MPMX19_04572 0.54 -0.8
950,732 + MPMX19_04572 0.57 +1.6
950,732 + MPMX19_04572 0.57 -0.6
950,732 + MPMX19_04572 0.57 -0.8
950,733 - MPMX19_04572 0.57 +0.4
950,733 - MPMX19_04572 0.57 -1.0
950,733 - MPMX19_04572 0.57 +0.2
950,825 + MPMX19_04572 0.72 -1.5
950,825 + MPMX19_04572 0.72 -0.1
950,826 - MPMX19_04572 0.72 -0.3
950,826 - MPMX19_04572 0.72 +1.8
950,826 - MPMX19_04572 0.72 -0.1
950,826 - MPMX19_04572 0.72 -0.8
950,826 - MPMX19_04572 0.72 +0.2
951,287 + MPMX19_04573 0.33 +0.8
951,287 + MPMX19_04573 0.33 +0.4
951,287 + MPMX19_04573 0.33 -0.5
951,287 + MPMX19_04573 0.33 -0.2
951,288 - MPMX19_04573 0.33 -2.9
951,288 - MPMX19_04573 0.33 -0.7
951,288 - MPMX19_04573 0.33 +0.6
951,288 - MPMX19_04573 0.33 -0.6
951,288 - MPMX19_04573 0.33 +0.8
951,329 + MPMX19_04573 0.39 -0.8
951,329 + MPMX19_04573 0.39 -0.8
951,329 + MPMX19_04573 0.39 +2.2
951,330 - MPMX19_04573 0.39 -0.8
951,330 - MPMX19_04573 0.39 -0.6
951,333 - MPMX19_04573 0.39 -1.1
951,333 - MPMX19_04573 0.39 +0.4
951,333 - MPMX19_04573 0.39 -0.1
951,333 - MPMX19_04573 0.39 -1.6
951,431 + MPMX19_04573 0.52 +1.4
951,431 + MPMX19_04573 0.52 -1.5
951,431 + MPMX19_04573 0.52 -1.6
951,431 + MPMX19_04573 0.52 -0.9
951,432 - MPMX19_04573 0.52 +0.3
951,432 - MPMX19_04573 0.52 +2.4
951,432 - MPMX19_04573 0.52 -0.5
951,432 - MPMX19_04573 0.52 -0.4
951,432 - MPMX19_04573 0.52 +0.4
951,489 - MPMX19_04573 0.59 -1.0
951,489 - MPMX19_04573 0.59 -0.7
951,489 - MPMX19_04573 0.59 -0.9
951,560 + MPMX19_04573 0.68 -0.4
951,560 + MPMX19_04573 0.68 -0.8
951,560 + MPMX19_04573 0.68 +0.1
951,560 + MPMX19_04573 0.68 -1.7
951,561 - MPMX19_04573 0.68 +0.6
951,561 - MPMX19_04573 0.68 -0.1
951,561 - MPMX19_04573 0.68 +0.3
951,561 - MPMX19_04573 0.68 +1.2
951,561 - MPMX19_04573 0.68 +0.2
951,561 - MPMX19_04573 0.68 -1.4
951,561 - MPMX19_04573 0.68 +0.0
951,588 - MPMX19_04573 0.71 -0.4
951,647 + MPMX19_04573 0.79 -1.2
951,647 + MPMX19_04573 0.79 -1.1
951,648 - MPMX19_04573 0.79 +0.2
951,761 + -0.9
951,761 + -0.0
951,761 + -1.1
951,761 + -1.1
951,762 - +0.0
951,762 - -0.8
951,762 - -2.7
951,762 - +1.2
951,762 - -1.2
951,762 - -1.4
951,762 - -1.2

Or see this region's nucleotide sequence