Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04566 and MPMX19_04567 are separated by 79 nucleotides MPMX19_04567 and MPMX19_04568 are separated by 6 nucleotides MPMX19_04568 and MPMX19_04569 are separated by 175 nucleotides MPMX19_04569 and MPMX19_04570 overlap by 4 nucleotides
MPMX19_04566: MPMX19_04566 - hypothetical protein, at 946,417 to 947,196
_04566
MPMX19_04567: MPMX19_04567 - hypothetical protein, at 947,276 to 947,656
_04567
MPMX19_04568: MPMX19_04568 - hypothetical protein, at 947,663 to 948,064
_04568
MPMX19_04569: MPMX19_04569 - Anti-sigma-F factor NrsF, at 948,240 to 948,875
_04569
MPMX19_04570: MPMX19_04570 - ECF RNA polymerase sigma factor SigF, at 948,872 to 949,429
_04570
Position (kb) 947
948
949 Strain fitness (log2 ratio) -2
-1
0
1 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.713 kb on - strand, within MPMX19_04566 at 946.713 kb on - strand, within MPMX19_04566 at 946.713 kb on - strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.961 kb on + strand, within MPMX19_04566 at 946.962 kb on - strand, within MPMX19_04566 at 946.962 kb on - strand, within MPMX19_04566 at 946.962 kb on - strand, within MPMX19_04566 at 946.994 kb on + strand, within MPMX19_04566 at 946.994 kb on + strand, within MPMX19_04566 at 946.995 kb on - strand, within MPMX19_04566 at 946.995 kb on - strand, within MPMX19_04566 at 946.995 kb on - strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.058 kb on - strand, within MPMX19_04566 at 947.089 kb on - strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.253 kb on + strand at 947.270 kb on + strand at 947.270 kb on + strand at 947.270 kb on + strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.277 kb on + strand at 947.277 kb on + strand at 947.277 kb on + strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.647 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.855 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.972 kb on + strand, within MPMX19_04568 at 947.993 kb on + strand, within MPMX19_04568 at 947.994 kb on - strand, within MPMX19_04568 at 948.175 kb on + strand at 948.175 kb on + strand at 948.175 kb on + strand at 948.175 kb on + strand at 948.193 kb on + strand at 948.307 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.994 kb on + strand, within MPMX19_04570
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 946,712 + MPMX19_04566 0.38 +0.4 946,712 + MPMX19_04566 0.38 -1.3 946,712 + MPMX19_04566 0.38 -1.2 946,712 + MPMX19_04566 0.38 -0.8 946,712 + MPMX19_04566 0.38 -0.5 946,713 - MPMX19_04566 0.38 -1.0 946,713 - MPMX19_04566 0.38 +0.2 946,713 - MPMX19_04566 0.38 -1.6 946,747 + MPMX19_04566 0.42 -0.6 946,747 + MPMX19_04566 0.42 -0.6 946,747 + MPMX19_04566 0.42 -2.1 946,747 + MPMX19_04566 0.42 -2.0 946,748 - MPMX19_04566 0.42 -0.1 946,748 - MPMX19_04566 0.42 +0.7 946,748 - MPMX19_04566 0.42 -0.6 946,748 - MPMX19_04566 0.42 -0.1 946,961 + MPMX19_04566 0.70 -1.4 946,962 - MPMX19_04566 0.70 +0.6 946,962 - MPMX19_04566 0.70 -1.4 946,962 - MPMX19_04566 0.70 -0.2 946,994 + MPMX19_04566 0.74 +1.0 946,994 + MPMX19_04566 0.74 +0.2 946,995 - MPMX19_04566 0.74 +0.0 946,995 - MPMX19_04566 0.74 -1.5 946,995 - MPMX19_04566 0.74 -0.8 947,012 + MPMX19_04566 0.76 -1.3 947,012 + MPMX19_04566 0.76 -1.5 947,012 + MPMX19_04566 0.76 -1.0 947,012 + MPMX19_04566 0.76 +0.2 947,012 + MPMX19_04566 0.76 -0.1 947,012 + MPMX19_04566 0.76 +0.2 947,012 + MPMX19_04566 0.76 -0.7 947,012 + MPMX19_04566 0.76 -0.6 947,012 + MPMX19_04566 0.76 +0.2 947,012 + MPMX19_04566 0.76 +1.4 947,012 + MPMX19_04566 0.76 +0.2 947,012 + MPMX19_04566 0.76 -1.6 947,012 + MPMX19_04566 0.76 +1.2 947,012 + MPMX19_04566 0.76 -0.0 947,013 - MPMX19_04566 0.76 -0.4 947,013 - MPMX19_04566 0.76 +0.0 947,013 - MPMX19_04566 0.76 -1.6 947,013 - MPMX19_04566 0.76 -2.1 947,013 - MPMX19_04566 0.76 +0.6 947,013 - MPMX19_04566 0.76 -0.1 947,013 - MPMX19_04566 0.76 +1.2 947,013 - MPMX19_04566 0.76 -1.7 947,013 - MPMX19_04566 0.76 -1.6 947,013 - MPMX19_04566 0.76 -0.3 947,013 - MPMX19_04566 0.76 -2.3 947,058 - MPMX19_04566 0.82 -1.3 947,089 - MPMX19_04566 0.86 -0.5 947,090 + MPMX19_04566 0.86 -1.4 947,090 + MPMX19_04566 0.86 +0.4 947,090 + MPMX19_04566 0.86 -0.4 947,090 + MPMX19_04566 0.86 +0.8 947,090 + MPMX19_04566 0.86 +0.7 947,090 + MPMX19_04566 0.86 -1.5 947,090 + MPMX19_04566 0.86 +0.2 947,090 + MPMX19_04566 0.86 -0.0 947,090 + MPMX19_04566 0.86 -1.5 947,090 + MPMX19_04566 0.86 -0.2 947,090 + MPMX19_04566 0.86 -0.3 947,090 + MPMX19_04566 0.86 +0.6 947,090 + MPMX19_04566 0.86 +0.1 947,090 + MPMX19_04566 0.86 -0.1 947,090 + MPMX19_04566 0.86 -0.8 947,091 - MPMX19_04566 0.86 -1.1 947,091 - MPMX19_04566 0.86 -0.0 947,091 - MPMX19_04566 0.86 -1.4 947,091 - MPMX19_04566 0.86 -1.8 947,091 - MPMX19_04566 0.86 +1.0 947,091 - MPMX19_04566 0.86 -1.4 947,091 - MPMX19_04566 0.86 -0.5 947,091 - MPMX19_04566 0.86 -0.8 947,091 - MPMX19_04566 0.86 -0.4 947,091 - MPMX19_04566 0.86 +0.2 947,091 - MPMX19_04566 0.86 +0.4 947,091 - MPMX19_04566 0.86 -1.6 947,091 - MPMX19_04566 0.86 -0.2 947,091 - MPMX19_04566 0.86 -0.8 947,091 - MPMX19_04566 0.86 -1.5 947,091 - MPMX19_04566 0.86 -0.7 947,091 - MPMX19_04566 0.86 -0.0 947,091 - MPMX19_04566 0.86 -0.1 947,091 - MPMX19_04566 0.86 +0.3 947,091 - MPMX19_04566 0.86 +0.6 947,091 - MPMX19_04566 0.86 +0.7 947,091 - MPMX19_04566 0.86 +0.4 947,253 + +0.5 947,270 + -1.5 947,270 + +0.3 947,270 + +1.2 947,271 - -0.3 947,271 - -0.0 947,271 - +0.6 947,271 - +1.0 947,271 - -1.7 947,277 + -0.1 947,277 + +1.4 947,277 + -2.1 947,278 - -1.0 947,278 - +0.2 947,278 - -1.0 947,278 - -1.0 947,278 - -0.8 947,278 - -2.1 947,278 - +0.9 947,278 - -0.4 947,278 - -0.1 947,647 + -0.4 947,649 + -0.8 947,649 + -0.8 947,649 + +0.2 947,649 + -0.4 947,649 + -0.3 947,649 + +0.2 947,649 + -0.1 947,649 + +0.6 947,649 + -0.7 947,649 + +0.7 947,650 - -1.5 947,650 - +1.3 947,650 - -0.4 947,650 - -0.3 947,650 - -0.2 947,650 - -0.3 947,650 - -1.0 947,650 - -0.8 947,855 + MPMX19_04568 0.48 +0.0 947,870 + MPMX19_04568 0.51 -1.0 947,870 + MPMX19_04568 0.51 +0.1 947,870 + MPMX19_04568 0.51 +1.2 947,870 + MPMX19_04568 0.51 +1.2 947,870 + MPMX19_04568 0.51 +0.7 947,870 + MPMX19_04568 0.51 -2.2 947,870 + MPMX19_04568 0.51 +0.6 947,870 + MPMX19_04568 0.51 -0.6 947,871 - MPMX19_04568 0.52 +0.0 947,871 - MPMX19_04568 0.52 -0.5 947,871 - MPMX19_04568 0.52 +0.4 947,871 - MPMX19_04568 0.52 -0.5 947,972 + MPMX19_04568 0.77 -0.4 947,993 + MPMX19_04568 0.82 +0.6 947,994 - MPMX19_04568 0.82 +0.4 948,175 + -0.1 948,175 + -0.2 948,175 + +0.2 948,175 + -0.6 948,193 + -1.3 948,307 + MPMX19_04569 0.11 -1.1 948,355 + MPMX19_04569 0.18 +0.6 948,355 + MPMX19_04569 0.18 +0.1 948,355 + MPMX19_04569 0.18 +0.6 948,355 + MPMX19_04569 0.18 +0.3 948,355 + MPMX19_04569 0.18 +0.2 948,355 + MPMX19_04569 0.18 +1.3 948,356 - MPMX19_04569 0.18 -1.9 948,356 - MPMX19_04569 0.18 +0.9 948,356 - MPMX19_04569 0.18 -0.2 948,356 - MPMX19_04569 0.18 +0.1 948,356 - MPMX19_04569 0.18 -0.6 948,356 - MPMX19_04569 0.18 -0.2 948,994 + MPMX19_04570 0.22 -1.7
Or see this region's nucleotide sequence