Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04561

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04559 and MPMX19_04560 overlap by 4 nucleotidesMPMX19_04560 and MPMX19_04561 overlap by 4 nucleotidesMPMX19_04561 and MPMX19_04562 overlap by 11 nucleotidesMPMX19_04562 and MPMX19_04563 are separated by 4 nucleotides MPMX19_04559: MPMX19_04559 - hypothetical protein, at 940,465 to 942,192 _04559 MPMX19_04560: MPMX19_04560 - hypothetical protein, at 942,189 to 942,710 _04560 MPMX19_04561: MPMX19_04561 - hypothetical protein, at 942,707 to 943,528 _04561 MPMX19_04562: MPMX19_04562 - hypothetical protein, at 943,518 to 944,435 _04562 MPMX19_04563: MPMX19_04563 - hypothetical protein, at 944,440 to 944,754 _04563 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.843 kb on + strand, within MPMX19_04559at 941.843 kb on + strand, within MPMX19_04559at 941.844 kb on - strand, within MPMX19_04559at 941.844 kb on - strand, within MPMX19_04559at 941.849 kb on + strand, within MPMX19_04559at 941.849 kb on + strand, within MPMX19_04559at 941.850 kb on - strand, within MPMX19_04559at 941.850 kb on - strand, within MPMX19_04559at 941.927 kb on + strand, within MPMX19_04559at 941.927 kb on + strand, within MPMX19_04559at 941.927 kb on + strand, within MPMX19_04559at 941.927 kb on + strand, within MPMX19_04559at 941.927 kb on + strand, within MPMX19_04559at 941.928 kb on - strand, within MPMX19_04559at 941.928 kb on - strand, within MPMX19_04559at 941.928 kb on - strand, within MPMX19_04559at 942.298 kb on + strand, within MPMX19_04560at 942.298 kb on + strand, within MPMX19_04560at 942.298 kb on + strand, within MPMX19_04560at 942.299 kb on - strand, within MPMX19_04560at 942.484 kb on + strand, within MPMX19_04560at 942.484 kb on + strand, within MPMX19_04560at 942.601 kb on + strand, within MPMX19_04560at 943.340 kb on + strand, within MPMX19_04561at 943.479 kb on + strandat 943.479 kb on + strandat 943.479 kb on + strandat 943.480 kb on - strandat 943.480 kb on - strandat 943.480 kb on - strandat 943.480 kb on - strandat 943.480 kb on - strandat 943.480 kb on - strandat 943.864 kb on + strand, within MPMX19_04562at 943.864 kb on + strand, within MPMX19_04562at 943.865 kb on - strand, within MPMX19_04562at 943.865 kb on - strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.056 kb on + strand, within MPMX19_04562at 944.057 kb on - strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.083 kb on + strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.084 kb on - strand, within MPMX19_04562at 944.146 kb on + strand, within MPMX19_04562at 944.146 kb on + strand, within MPMX19_04562at 944.146 kb on + strand, within MPMX19_04562at 944.147 kb on - strand, within MPMX19_04562at 944.147 kb on - strand, within MPMX19_04562at 944.287 kb on + strand, within MPMX19_04562at 944.287 kb on + strand, within MPMX19_04562at 944.288 kb on - strand, within MPMX19_04562

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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941,843 + MPMX19_04559 0.80 -0.1
941,843 + MPMX19_04559 0.80 +0.2
941,844 - MPMX19_04559 0.80 -1.1
941,844 - MPMX19_04559 0.80 -2.2
941,849 + MPMX19_04559 0.80 -1.0
941,849 + MPMX19_04559 0.80 +0.8
941,850 - MPMX19_04559 0.80 +0.4
941,850 - MPMX19_04559 0.80 -0.1
941,927 + MPMX19_04559 0.85 -1.0
941,927 + MPMX19_04559 0.85 -0.1
941,927 + MPMX19_04559 0.85 -1.3
941,927 + MPMX19_04559 0.85 -0.8
941,927 + MPMX19_04559 0.85 +0.8
941,928 - MPMX19_04559 0.85 +0.0
941,928 - MPMX19_04559 0.85 -1.5
941,928 - MPMX19_04559 0.85 -0.4
942,298 + MPMX19_04560 0.21 -1.1
942,298 + MPMX19_04560 0.21 -0.2
942,298 + MPMX19_04560 0.21 -2.5
942,299 - MPMX19_04560 0.21 -1.3
942,484 + MPMX19_04560 0.57 -0.3
942,484 + MPMX19_04560 0.57 -0.7
942,601 + MPMX19_04560 0.79 -0.6
943,340 + MPMX19_04561 0.77 -1.3
943,479 + +0.4
943,479 + -0.7
943,479 + -0.8
943,480 - +0.1
943,480 - -0.6
943,480 - -0.5
943,480 - -1.3
943,480 - -0.3
943,480 - -0.6
943,864 + MPMX19_04562 0.38 -1.1
943,864 + MPMX19_04562 0.38 -1.0
943,865 - MPMX19_04562 0.38 +0.4
943,865 - MPMX19_04562 0.38 -1.7
944,056 + MPMX19_04562 0.59 -0.4
944,056 + MPMX19_04562 0.59 +0.3
944,056 + MPMX19_04562 0.59 -0.4
944,056 + MPMX19_04562 0.59 -1.1
944,057 - MPMX19_04562 0.59 -3.3
944,083 + MPMX19_04562 0.62 -0.3
944,083 + MPMX19_04562 0.62 -0.6
944,083 + MPMX19_04562 0.62 -2.9
944,083 + MPMX19_04562 0.62 +1.3
944,083 + MPMX19_04562 0.62 -0.3
944,083 + MPMX19_04562 0.62 +0.8
944,083 + MPMX19_04562 0.62 -1.3
944,084 - MPMX19_04562 0.62 -0.2
944,084 - MPMX19_04562 0.62 +1.8
944,084 - MPMX19_04562 0.62 -2.4
944,084 - MPMX19_04562 0.62 -0.9
944,084 - MPMX19_04562 0.62 -1.1
944,084 - MPMX19_04562 0.62 +0.2
944,084 - MPMX19_04562 0.62 -0.9
944,084 - MPMX19_04562 0.62 -0.9
944,084 - MPMX19_04562 0.62 +1.2
944,146 + MPMX19_04562 0.68 -1.9
944,146 + MPMX19_04562 0.68 -0.2
944,146 + MPMX19_04562 0.68 +0.3
944,147 - MPMX19_04562 0.69 +0.8
944,147 - MPMX19_04562 0.69 +0.9
944,287 + MPMX19_04562 0.84 -0.1
944,287 + MPMX19_04562 0.84 -0.6
944,288 - MPMX19_04562 0.84 -1.8

Or see this region's nucleotide sequence