Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04550 and MPMX19_04551 are separated by 13 nucleotides MPMX19_04551 and MPMX19_04552 are separated by 62 nucleotides MPMX19_04552 and MPMX19_04553 are separated by 47 nucleotides MPMX19_04553 and MPMX19_04554 are separated by 229 nucleotides
MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771
_04550
MPMX19_04551: MPMX19_04551 - HTH-type transcriptional repressor RspR, at 927,785 to 928,474
_04551
MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961
_04552
MPMX19_04553: MPMX19_04553 - hypothetical protein, at 930,009 to 930,425
_04553
MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371
_04554
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.674 kb on - strand, within MPMX19_04550 at 927.740 kb on - strand at 928.017 kb on - strand, within MPMX19_04551 at 928.193 kb on + strand, within MPMX19_04551 at 928.194 kb on - strand, within MPMX19_04551 at 928.194 kb on - strand, within MPMX19_04551 at 928.463 kb on + strand at 928.464 kb on - strand at 928.464 kb on - strand at 928.464 kb on - strand at 928.472 kb on + strand at 928.473 kb on - strand at 928.473 kb on - strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.867 kb on + strand, within MPMX19_04552 at 928.867 kb on + strand, within MPMX19_04552 at 928.868 kb on - strand, within MPMX19_04552 at 928.868 kb on - strand, within MPMX19_04552 at 928.904 kb on - strand, within MPMX19_04552 at 928.904 kb on - strand, within MPMX19_04552 at 928.904 kb on - strand, within MPMX19_04552 at 928.981 kb on + strand, within MPMX19_04552 at 928.981 kb on + strand, within MPMX19_04552 at 928.981 kb on + strand, within MPMX19_04552 at 928.982 kb on - strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 928.999 kb on + strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.000 kb on - strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.008 kb on + strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.009 kb on - strand, within MPMX19_04552 at 929.162 kb on - strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.320 kb on + strand, within MPMX19_04552 at 929.321 kb on - strand, within MPMX19_04552 at 929.321 kb on - strand, within MPMX19_04552 at 929.321 kb on - strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.341 kb on + strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.342 kb on - strand, within MPMX19_04552 at 929.504 kb on - strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.680 kb on + strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.681 kb on - strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.740 kb on + strand, within MPMX19_04552 at 929.741 kb on - strand, within MPMX19_04552 at 929.741 kb on - strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.797 kb on + strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.798 kb on - strand, within MPMX19_04552 at 929.806 kb on + strand, within MPMX19_04552 at 930.238 kb on - strand, within MPMX19_04553 at 930.238 kb on - strand, within MPMX19_04553 at 930.276 kb on + strand, within MPMX19_04553 at 930.276 kb on + strand, within MPMX19_04553 at 930.277 kb on - strand, within MPMX19_04553 at 930.563 kb on + strand at 930.563 kb on + strand at 930.564 kb on - strand at 930.564 kb on - strand at 930.564 kb on - strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.656 kb on + strand at 930.657 kb on - strand at 930.657 kb on - strand at 930.657 kb on - strand at 930.701 kb on + strand at 930.701 kb on + strand at 930.701 kb on + strand at 930.702 kb on - strand at 930.702 kb on - strand at 930.702 kb on - strand at 930.766 kb on + strand, within MPMX19_04554 at 930.766 kb on + strand, within MPMX19_04554 at 930.766 kb on + strand, within MPMX19_04554 at 930.767 kb on - strand, within MPMX19_04554 at 930.767 kb on - strand, within MPMX19_04554 at 930.860 kb on + strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.932 kb on - strand, within MPMX19_04554
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 927,670 + MPMX19_04550 0.85 +0.4 927,670 + MPMX19_04550 0.85 -0.3 927,670 + MPMX19_04550 0.85 -0.1 927,670 + MPMX19_04550 0.85 -2.1 927,670 + MPMX19_04550 0.85 -0.4 927,670 + MPMX19_04550 0.85 -0.6 927,670 + MPMX19_04550 0.85 +0.8 927,670 + MPMX19_04550 0.85 -0.3 927,670 + MPMX19_04550 0.85 -1.7 927,671 - MPMX19_04550 0.85 +1.1 927,671 - MPMX19_04550 0.85 -0.1 927,671 - MPMX19_04550 0.85 +0.9 927,671 - MPMX19_04550 0.85 +0.9 927,673 + MPMX19_04550 0.86 +0.2 927,673 + MPMX19_04550 0.86 -1.3 927,673 + MPMX19_04550 0.86 -0.4 927,673 + MPMX19_04550 0.86 +0.7 927,673 + MPMX19_04550 0.86 -2.9 927,673 + MPMX19_04550 0.86 -0.1 927,673 + MPMX19_04550 0.86 -0.2 927,673 + MPMX19_04550 0.86 +1.4 927,673 + MPMX19_04550 0.86 -0.7 927,673 + MPMX19_04550 0.86 -0.8 927,673 + MPMX19_04550 0.86 -0.6 927,673 + MPMX19_04550 0.86 +0.9 927,674 - MPMX19_04550 0.86 +0.2 927,740 - -2.3 928,017 - MPMX19_04551 0.34 -1.1 928,193 + MPMX19_04551 0.59 -0.3 928,194 - MPMX19_04551 0.59 +0.2 928,194 - MPMX19_04551 0.59 +0.0 928,463 + -1.0 928,464 - -0.1 928,464 - -1.1 928,464 - -0.1 928,472 + -1.5 928,473 - -1.1 928,473 - -1.6 928,556 + -0.9 928,556 + +0.2 928,556 + +0.1 928,556 + -0.7 928,867 + MPMX19_04552 0.23 +0.0 928,867 + MPMX19_04552 0.23 -0.6 928,868 - MPMX19_04552 0.23 +0.1 928,868 - MPMX19_04552 0.23 -2.4 928,904 - MPMX19_04552 0.26 -2.3 928,904 - MPMX19_04552 0.26 -0.6 928,904 - MPMX19_04552 0.26 -1.3 928,981 + MPMX19_04552 0.31 -0.1 928,981 + MPMX19_04552 0.31 -1.7 928,981 + MPMX19_04552 0.31 +0.4 928,982 - MPMX19_04552 0.31 +0.2 928,999 + MPMX19_04552 0.32 -0.4 928,999 + MPMX19_04552 0.32 +0.6 928,999 + MPMX19_04552 0.32 -2.4 928,999 + MPMX19_04552 0.32 -0.8 928,999 + MPMX19_04552 0.32 +0.3 928,999 + MPMX19_04552 0.32 -0.6 928,999 + MPMX19_04552 0.32 -1.5 928,999 + MPMX19_04552 0.32 -0.8 928,999 + MPMX19_04552 0.32 -0.8 928,999 + MPMX19_04552 0.32 -1.5 928,999 + MPMX19_04552 0.32 +1.2 928,999 + MPMX19_04552 0.32 +0.8 929,000 - MPMX19_04552 0.32 -1.0 929,000 - MPMX19_04552 0.32 +0.0 929,000 - MPMX19_04552 0.32 +0.2 929,000 - MPMX19_04552 0.32 -0.1 929,000 - MPMX19_04552 0.32 -1.0 929,000 - MPMX19_04552 0.32 -1.6 929,000 - MPMX19_04552 0.32 +0.4 929,000 - MPMX19_04552 0.32 -1.3 929,000 - MPMX19_04552 0.32 +0.6 929,000 - MPMX19_04552 0.32 +0.9 929,000 - MPMX19_04552 0.32 -0.6 929,000 - MPMX19_04552 0.32 -1.4 929,008 + MPMX19_04552 0.33 +0.6 929,008 + MPMX19_04552 0.33 +0.0 929,008 + MPMX19_04552 0.33 -0.5 929,008 + MPMX19_04552 0.33 -0.0 929,009 - MPMX19_04552 0.33 -0.7 929,009 - MPMX19_04552 0.33 -0.1 929,009 - MPMX19_04552 0.33 -0.7 929,009 - MPMX19_04552 0.33 +2.8 929,009 - MPMX19_04552 0.33 -1.7 929,162 - MPMX19_04552 0.44 +0.0 929,320 + MPMX19_04552 0.55 -0.5 929,320 + MPMX19_04552 0.55 -0.8 929,320 + MPMX19_04552 0.55 -1.1 929,320 + MPMX19_04552 0.55 -0.1 929,320 + MPMX19_04552 0.55 -1.1 929,321 - MPMX19_04552 0.55 -0.4 929,321 - MPMX19_04552 0.55 -0.1 929,321 - MPMX19_04552 0.55 -1.9 929,341 + MPMX19_04552 0.56 +0.1 929,341 + MPMX19_04552 0.56 -0.6 929,341 + MPMX19_04552 0.56 +0.9 929,341 + MPMX19_04552 0.56 -0.8 929,341 + MPMX19_04552 0.56 +0.3 929,341 + MPMX19_04552 0.56 -0.4 929,341 + MPMX19_04552 0.56 +0.5 929,341 + MPMX19_04552 0.56 +0.3 929,341 + MPMX19_04552 0.56 +0.6 929,341 + MPMX19_04552 0.56 +0.0 929,341 + MPMX19_04552 0.56 -1.3 929,341 + MPMX19_04552 0.56 -0.4 929,341 + MPMX19_04552 0.56 -1.5 929,341 + MPMX19_04552 0.56 -1.6 929,341 + MPMX19_04552 0.56 -1.9 929,341 + MPMX19_04552 0.56 -0.6 929,342 - MPMX19_04552 0.56 +1.0 929,342 - MPMX19_04552 0.56 +0.2 929,342 - MPMX19_04552 0.56 +0.6 929,342 - MPMX19_04552 0.56 -0.6 929,342 - MPMX19_04552 0.56 -0.6 929,342 - MPMX19_04552 0.56 -1.2 929,342 - MPMX19_04552 0.56 -0.2 929,342 - MPMX19_04552 0.56 -1.2 929,342 - MPMX19_04552 0.56 -0.1 929,342 - MPMX19_04552 0.56 -0.1 929,342 - MPMX19_04552 0.56 -0.0 929,342 - MPMX19_04552 0.56 +1.6 929,342 - MPMX19_04552 0.56 -0.4 929,342 - MPMX19_04552 0.56 -0.2 929,342 - MPMX19_04552 0.56 -0.8 929,342 - MPMX19_04552 0.56 -0.1 929,342 - MPMX19_04552 0.56 -0.3 929,342 - MPMX19_04552 0.56 -0.6 929,342 - MPMX19_04552 0.56 -0.4 929,504 - MPMX19_04552 0.68 -1.4 929,680 + MPMX19_04552 0.80 -1.3 929,680 + MPMX19_04552 0.80 +1.8 929,680 + MPMX19_04552 0.80 -0.9 929,680 + MPMX19_04552 0.80 -1.1 929,680 + MPMX19_04552 0.80 +0.4 929,681 - MPMX19_04552 0.80 +0.3 929,681 - MPMX19_04552 0.80 -1.9 929,681 - MPMX19_04552 0.80 -1.0 929,681 - MPMX19_04552 0.80 +1.0 929,681 - MPMX19_04552 0.80 -0.4 929,681 - MPMX19_04552 0.80 -1.1 929,681 - MPMX19_04552 0.80 -0.6 929,681 - MPMX19_04552 0.80 -0.9 929,740 + MPMX19_04552 0.84 -0.1 929,740 + MPMX19_04552 0.84 -0.2 929,740 + MPMX19_04552 0.84 -0.9 929,740 + MPMX19_04552 0.84 +0.2 929,740 + MPMX19_04552 0.84 -0.7 929,741 - MPMX19_04552 0.84 +0.0 929,741 - MPMX19_04552 0.84 -1.1 929,797 + MPMX19_04552 0.88 +0.4 929,797 + MPMX19_04552 0.88 +0.4 929,797 + MPMX19_04552 0.88 -1.6 929,797 + MPMX19_04552 0.88 +2.2 929,798 - MPMX19_04552 0.88 -1.4 929,798 - MPMX19_04552 0.88 -1.1 929,798 - MPMX19_04552 0.88 -1.8 929,798 - MPMX19_04552 0.88 -1.4 929,806 + MPMX19_04552 0.89 +0.1 930,238 - MPMX19_04553 0.55 +0.6 930,238 - MPMX19_04553 0.55 -0.5 930,276 + MPMX19_04553 0.64 -1.1 930,276 + MPMX19_04553 0.64 -0.6 930,277 - MPMX19_04553 0.64 -0.5 930,563 + -1.6 930,563 + -1.5 930,564 - +0.3 930,564 - +0.1 930,564 - -0.7 930,656 + -1.4 930,656 + -1.0 930,656 + +0.3 930,656 + -0.9 930,656 + +1.9 930,657 - +1.2 930,657 - -0.2 930,657 - -1.2 930,701 + +0.3 930,701 + -0.8 930,701 + -0.6 930,702 - +1.2 930,702 - +0.2 930,702 - -0.2 930,766 + MPMX19_04554 0.15 -1.1 930,766 + MPMX19_04554 0.15 +0.0 930,766 + MPMX19_04554 0.15 +0.3 930,767 - MPMX19_04554 0.16 +0.2 930,767 - MPMX19_04554 0.16 +0.6 930,860 + MPMX19_04554 0.29 -0.6 930,861 - MPMX19_04554 0.29 +1.2 930,861 - MPMX19_04554 0.29 -1.3 930,861 - MPMX19_04554 0.29 -0.6 930,861 - MPMX19_04554 0.29 -1.5 930,932 - MPMX19_04554 0.39 -0.1
Or see this region's nucleotide sequence