Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04538 and MPMX19_04539 are separated by 92 nucleotides MPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides MPMX19_04540 and MPMX19_04541 overlap by 17 nucleotides
MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474
_04538
MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466
_04539
MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358
_04540
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
Position (kb) 912
913
914 Strain fitness (log2 ratio) -2
-1
0
1
2 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.836 kb on + strand, within MPMX19_04538 at 911.837 kb on - strand, within MPMX19_04538 at 911.884 kb on + strand, within MPMX19_04538 at 911.899 kb on + strand, within MPMX19_04538 at 911.980 kb on + strand, within MPMX19_04538 at 911.981 kb on - strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.220 kb on + strand, within MPMX19_04538 at 912.220 kb on + strand, within MPMX19_04538 at 912.265 kb on + strand, within MPMX19_04538 at 912.265 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.364 kb on + strand at 912.364 kb on + strand at 912.364 kb on + strand at 912.365 kb on - strand at 912.365 kb on - strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.440 kb on - strand at 912.440 kb on - strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.473 kb on - strand at 912.473 kb on - strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.577 kb on + strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.642 kb on + strand at 912.642 kb on + strand at 912.642 kb on + strand at 913.362 kb on + strand, within MPMX19_04539 at 913.362 kb on + strand, within MPMX19_04539 at 913.363 kb on - strand, within MPMX19_04539 at 913.423 kb on - strand at 913.555 kb on - strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.715 kb on - strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.195 kb on - strand, within MPMX19_04540
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 911,671 + MPMX19_04538 0.29 -0.9 911,671 + MPMX19_04538 0.29 +0.8 911,671 + MPMX19_04538 0.29 -0.2 911,671 + MPMX19_04538 0.29 +0.3 911,671 + MPMX19_04538 0.29 +0.2 911,671 + MPMX19_04538 0.29 +1.0 911,671 + MPMX19_04538 0.29 -0.0 911,671 + MPMX19_04538 0.29 +1.9 911,671 + MPMX19_04538 0.29 -0.3 911,671 + MPMX19_04538 0.29 -0.3 911,672 - MPMX19_04538 0.29 +0.0 911,672 - MPMX19_04538 0.29 +1.0 911,672 - MPMX19_04538 0.29 -0.6 911,672 - MPMX19_04538 0.29 -1.3 911,672 - MPMX19_04538 0.29 -1.1 911,704 + MPMX19_04538 0.32 -1.3 911,704 + MPMX19_04538 0.32 +2.2 911,704 + MPMX19_04538 0.32 -0.4 911,705 - MPMX19_04538 0.32 -1.6 911,705 - MPMX19_04538 0.32 -0.5 911,705 - MPMX19_04538 0.32 -0.4 911,705 - MPMX19_04538 0.32 -0.5 911,836 + MPMX19_04538 0.44 +0.8 911,837 - MPMX19_04538 0.44 -1.1 911,884 + MPMX19_04538 0.48 +0.5 911,899 + MPMX19_04538 0.49 -1.0 911,980 + MPMX19_04538 0.56 -1.1 911,981 - MPMX19_04538 0.56 -0.4 912,031 + MPMX19_04538 0.61 -0.6 912,031 + MPMX19_04538 0.61 -0.8 912,031 + MPMX19_04538 0.61 -0.5 912,031 + MPMX19_04538 0.61 -0.1 912,031 + MPMX19_04538 0.61 +1.0 912,031 + MPMX19_04538 0.61 +0.2 912,032 - MPMX19_04538 0.61 -1.4 912,032 - MPMX19_04538 0.61 +0.6 912,032 - MPMX19_04538 0.61 -0.8 912,032 - MPMX19_04538 0.61 -1.6 912,032 - MPMX19_04538 0.61 +0.5 912,115 + MPMX19_04538 0.68 -0.8 912,115 + MPMX19_04538 0.68 -0.1 912,115 + MPMX19_04538 0.68 -0.1 912,115 + MPMX19_04538 0.68 -0.9 912,115 + MPMX19_04538 0.68 +0.3 912,115 + MPMX19_04538 0.68 -0.0 912,115 + MPMX19_04538 0.68 +1.9 912,115 + MPMX19_04538 0.68 -1.5 912,115 + MPMX19_04538 0.68 -1.0 912,115 + MPMX19_04538 0.68 -0.8 912,115 + MPMX19_04538 0.68 -0.4 912,115 + MPMX19_04538 0.68 +0.2 912,115 + MPMX19_04538 0.68 -1.6 912,115 + MPMX19_04538 0.68 +0.6 912,116 - MPMX19_04538 0.68 -0.1 912,116 - MPMX19_04538 0.68 +0.7 912,116 - MPMX19_04538 0.68 -1.0 912,116 - MPMX19_04538 0.68 -1.9 912,116 - MPMX19_04538 0.68 -0.6 912,116 - MPMX19_04538 0.68 -0.9 912,116 - MPMX19_04538 0.68 -0.3 912,116 - MPMX19_04538 0.68 -1.5 912,116 - MPMX19_04538 0.68 +1.6 912,116 - MPMX19_04538 0.68 -1.9 912,116 - MPMX19_04538 0.68 -1.0 912,116 - MPMX19_04538 0.68 -1.0 912,116 - MPMX19_04538 0.68 -0.9 912,116 - MPMX19_04538 0.68 -1.5 912,116 - MPMX19_04538 0.68 -0.3 912,116 - MPMX19_04538 0.68 +0.3 912,116 - MPMX19_04538 0.68 -2.0 912,184 + MPMX19_04538 0.74 -0.3 912,184 + MPMX19_04538 0.74 -0.3 912,184 + MPMX19_04538 0.74 -2.0 912,184 + MPMX19_04538 0.74 -0.1 912,184 + MPMX19_04538 0.74 -0.6 912,184 + MPMX19_04538 0.74 -0.9 912,184 + MPMX19_04538 0.74 +0.1 912,184 + MPMX19_04538 0.74 -0.4 912,184 + MPMX19_04538 0.74 -2.3 912,184 + MPMX19_04538 0.74 -0.2 912,184 + MPMX19_04538 0.74 -0.6 912,184 + MPMX19_04538 0.74 +0.6 912,184 + MPMX19_04538 0.74 -0.7 912,184 + MPMX19_04538 0.74 -0.1 912,184 + MPMX19_04538 0.74 -0.8 912,185 - MPMX19_04538 0.74 -0.6 912,185 - MPMX19_04538 0.74 -0.7 912,185 - MPMX19_04538 0.74 -1.5 912,185 - MPMX19_04538 0.74 -2.3 912,185 - MPMX19_04538 0.74 -1.0 912,185 - MPMX19_04538 0.74 +0.4 912,185 - MPMX19_04538 0.74 -0.5 912,185 - MPMX19_04538 0.74 -2.2 912,185 - MPMX19_04538 0.74 -0.3 912,185 - MPMX19_04538 0.74 -1.1 912,185 - MPMX19_04538 0.74 -2.3 912,185 - MPMX19_04538 0.74 +0.3 912,185 - MPMX19_04538 0.74 -1.1 912,185 - MPMX19_04538 0.74 -0.6 912,185 - MPMX19_04538 0.74 -1.3 912,185 - MPMX19_04538 0.74 -0.4 912,185 - MPMX19_04538 0.74 +0.0 912,185 - MPMX19_04538 0.74 -2.3 912,220 + MPMX19_04538 0.78 +0.4 912,220 + MPMX19_04538 0.78 +1.2 912,265 + MPMX19_04538 0.81 -1.7 912,265 + MPMX19_04538 0.81 -0.3 912,271 + MPMX19_04538 0.82 -0.6 912,271 + MPMX19_04538 0.82 -0.3 912,271 + MPMX19_04538 0.82 +1.2 912,271 + MPMX19_04538 0.82 -0.3 912,271 + MPMX19_04538 0.82 -0.1 912,271 + MPMX19_04538 0.82 +0.3 912,272 - MPMX19_04538 0.82 -0.7 912,272 - MPMX19_04538 0.82 -0.1 912,272 - MPMX19_04538 0.82 -2.0 912,272 - MPMX19_04538 0.82 +0.8 912,272 - MPMX19_04538 0.82 -0.8 912,272 - MPMX19_04538 0.82 +0.4 912,272 - MPMX19_04538 0.82 -1.3 912,272 - MPMX19_04538 0.82 -0.7 912,272 - MPMX19_04538 0.82 -0.1 912,272 - MPMX19_04538 0.82 -0.3 912,364 + -0.3 912,364 + +0.5 912,364 + -0.1 912,365 - -0.5 912,365 - -1.0 912,424 + -0.3 912,424 + -0.8 912,424 + -1.8 912,424 + +0.1 912,424 + -0.3 912,424 + -0.9 912,425 - +0.1 912,425 - -1.1 912,425 - +0.1 912,425 - +1.4 912,425 - +0.3 912,425 - +0.6 912,425 - -1.1 912,425 - -0.4 912,425 - +0.3 912,425 - +1.2 912,425 - +0.2 912,425 - -1.1 912,425 - -1.5 912,425 - -1.9 912,439 + -1.5 912,439 + -0.9 912,439 + -0.3 912,439 + +0.2 912,439 + -1.5 912,439 + -1.4 912,440 - -0.1 912,440 - +1.0 912,472 + -2.3 912,472 + +0.2 912,472 + -0.1 912,472 + -0.2 912,473 - +0.9 912,473 - -1.0 912,559 + -0.4 912,559 + -0.9 912,559 + +0.4 912,559 + -0.1 912,559 + +0.0 912,559 + -0.5 912,559 + -0.3 912,559 + -0.6 912,559 + +0.4 912,559 + -0.9 912,559 + -1.1 912,559 + -1.3 912,559 + -0.1 912,559 + +0.3 912,559 + +0.2 912,559 + -1.1 912,559 + +0.6 912,559 + +0.4 912,559 + -1.1 912,559 + +0.2 912,559 + -0.1 912,560 - -0.1 912,560 - -0.1 912,560 - -1.3 912,560 - -1.0 912,560 - +1.4 912,560 - +0.2 912,560 - -2.1 912,560 - -1.3 912,560 - -0.8 912,560 - -1.0 912,560 - -0.8 912,560 - +0.4 912,560 - +0.8 912,560 - +0.5 912,560 - +0.3 912,560 - +0.4 912,560 - -1.6 912,560 - -0.8 912,560 - +1.0 912,560 - +0.6 912,560 - -0.3 912,560 - +1.2 912,560 - +0.6 912,560 - -1.5 912,560 - -1.5 912,560 - -0.9 912,560 - -1.3 912,577 + -1.1 912,578 - +0.1 912,578 - +0.0 912,578 - -1.1 912,642 + +0.0 912,642 + -0.4 912,642 + +0.4 913,362 + MPMX19_04539 0.88 -1.0 913,362 + MPMX19_04539 0.88 -0.4 913,363 - MPMX19_04539 0.88 +0.4 913,423 - -0.2 913,555 - MPMX19_04540 0.11 +2.0 913,714 + MPMX19_04540 0.28 -0.1 913,714 + MPMX19_04540 0.28 -0.4 913,715 - MPMX19_04540 0.28 +0.8 914,056 + MPMX19_04540 0.66 -0.1 914,056 + MPMX19_04540 0.66 -0.6 914,056 + MPMX19_04540 0.66 -0.6 914,056 + MPMX19_04540 0.66 -0.7 914,056 + MPMX19_04540 0.66 +0.4 914,056 + MPMX19_04540 0.66 -0.6 914,056 + MPMX19_04540 0.66 +0.2 914,056 + MPMX19_04540 0.66 +0.4 914,057 - MPMX19_04540 0.66 +1.4 914,057 - MPMX19_04540 0.66 -1.7 914,057 - MPMX19_04540 0.66 +0.8 914,057 - MPMX19_04540 0.66 -0.4 914,057 - MPMX19_04540 0.66 +1.0 914,057 - MPMX19_04540 0.66 -1.6 914,057 - MPMX19_04540 0.66 -0.4 914,057 - MPMX19_04540 0.66 -1.5 914,065 + MPMX19_04540 0.67 +0.9 914,065 + MPMX19_04540 0.67 -2.1 914,065 + MPMX19_04540 0.67 +0.5 914,065 + MPMX19_04540 0.67 -1.4 914,065 + MPMX19_04540 0.67 +0.8 914,066 - MPMX19_04540 0.67 -0.4 914,066 - MPMX19_04540 0.67 -0.7 914,066 - MPMX19_04540 0.67 -0.4 914,194 + MPMX19_04540 0.82 -1.1 914,194 + MPMX19_04540 0.82 +0.2 914,195 - MPMX19_04540 0.82 +0.3
Or see this region's nucleotide sequence