Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04532 and MPMX19_04533 are separated by 81 nucleotides MPMX19_04533 and MPMX19_04534 are separated by 45 nucleotides MPMX19_04534 and MPMX19_04535 are separated by 178 nucleotides
MPMX19_04532: MPMX19_04532 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 903,865 to 906,003
_04532
MPMX19_04533: MPMX19_04533 - HTH-type transcriptional regulator NimR, at 906,085 to 906,906
_04533
MPMX19_04534: MPMX19_04534 - Multidrug export protein MepA, at 906,952 to 908,382
_04534
MPMX19_04535: MPMX19_04535 - Maleate isomerase, at 908,561 to 909,367
_04535
Position (kb) 906
907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 906.045 kb on + strand at 906.045 kb on + strand at 906.184 kb on + strand, within MPMX19_04533 at 906.185 kb on - strand, within MPMX19_04533 at 906.185 kb on - strand, within MPMX19_04533 at 906.185 kb on - strand, within MPMX19_04533 at 906.185 kb on - strand, within MPMX19_04533 at 906.361 kb on + strand, within MPMX19_04533 at 906.361 kb on + strand, within MPMX19_04533 at 906.361 kb on + strand, within MPMX19_04533 at 906.362 kb on - strand, within MPMX19_04533 at 906.362 kb on - strand, within MPMX19_04533 at 906.362 kb on - strand, within MPMX19_04533 at 906.362 kb on - strand, within MPMX19_04533 at 906.362 kb on - strand, within MPMX19_04533 at 906.800 kb on - strand, within MPMX19_04533 at 906.862 kb on + strand at 906.862 kb on + strand at 906.862 kb on + strand at 906.862 kb on + strand at 906.862 kb on + strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 906.863 kb on - strand at 907.183 kb on + strand, within MPMX19_04534 at 907.183 kb on + strand, within MPMX19_04534 at 907.183 kb on + strand, within MPMX19_04534 at 907.184 kb on - strand, within MPMX19_04534 at 907.184 kb on - strand, within MPMX19_04534 at 907.184 kb on - strand, within MPMX19_04534 at 907.426 kb on + strand, within MPMX19_04534 at 907.426 kb on + strand, within MPMX19_04534 at 907.426 kb on + strand, within MPMX19_04534 at 907.427 kb on - strand, within MPMX19_04534 at 907.427 kb on - strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.610 kb on + strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.611 kb on - strand, within MPMX19_04534 at 907.862 kb on + strand, within MPMX19_04534 at 907.862 kb on + strand, within MPMX19_04534 at 907.863 kb on - strand, within MPMX19_04534 at 907.863 kb on - strand, within MPMX19_04534 at 907.863 kb on - strand, within MPMX19_04534 at 907.970 kb on + strand, within MPMX19_04534 at 907.970 kb on + strand, within MPMX19_04534 at 907.970 kb on + strand, within MPMX19_04534 at 907.971 kb on - strand, within MPMX19_04534 at 907.971 kb on - strand, within MPMX19_04534 at 907.971 kb on - strand, within MPMX19_04534 at 908.258 kb on + strand at 908.258 kb on + strand at 908.258 kb on + strand at 908.258 kb on + strand at 908.259 kb on - strand at 908.366 kb on - strand at 908.366 kb on - strand at 908.366 kb on - strand at 908.430 kb on + strand at 908.430 kb on + strand at 908.431 kb on - strand at 908.431 kb on - strand at 908.562 kb on + strand at 908.874 kb on + strand, within MPMX19_04535 at 908.874 kb on + strand, within MPMX19_04535 at 908.874 kb on + strand, within MPMX19_04535 at 908.875 kb on - strand, within MPMX19_04535 at 909.184 kb on - strand, within MPMX19_04535 at 909.184 kb on - strand, within MPMX19_04535 at 909.184 kb on - strand, within MPMX19_04535 at 909.358 kb on - strand at 909.361 kb on + strand at 909.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 906,045 + +0.0 906,045 + +0.7 906,184 + MPMX19_04533 0.12 -0.1 906,185 - MPMX19_04533 0.12 -0.1 906,185 - MPMX19_04533 0.12 -0.6 906,185 - MPMX19_04533 0.12 -0.8 906,185 - MPMX19_04533 0.12 -1.3 906,361 + MPMX19_04533 0.34 +0.6 906,361 + MPMX19_04533 0.34 -2.1 906,361 + MPMX19_04533 0.34 +0.7 906,362 - MPMX19_04533 0.34 +0.0 906,362 - MPMX19_04533 0.34 -0.0 906,362 - MPMX19_04533 0.34 +0.6 906,362 - MPMX19_04533 0.34 -0.1 906,362 - MPMX19_04533 0.34 +0.7 906,800 - MPMX19_04533 0.87 +0.9 906,862 + -0.9 906,862 + -0.8 906,862 + -1.6 906,862 + -0.6 906,862 + -0.6 906,863 - -1.1 906,863 - -0.2 906,863 - +0.2 906,863 - +0.8 906,863 - -0.1 906,863 - -0.2 906,863 - -0.8 906,863 - +0.4 906,863 - -1.3 906,863 - -0.1 906,863 - +1.3 906,863 - -0.1 906,863 - -1.3 907,183 + MPMX19_04534 0.16 +0.8 907,183 + MPMX19_04534 0.16 -0.8 907,183 + MPMX19_04534 0.16 -1.5 907,184 - MPMX19_04534 0.16 +0.6 907,184 - MPMX19_04534 0.16 -0.6 907,184 - MPMX19_04534 0.16 -0.1 907,426 + MPMX19_04534 0.33 -1.8 907,426 + MPMX19_04534 0.33 -0.9 907,426 + MPMX19_04534 0.33 -0.7 907,427 - MPMX19_04534 0.33 +1.0 907,427 - MPMX19_04534 0.33 -0.2 907,610 + MPMX19_04534 0.46 -0.1 907,610 + MPMX19_04534 0.46 +1.0 907,610 + MPMX19_04534 0.46 -0.6 907,610 + MPMX19_04534 0.46 +1.9 907,610 + MPMX19_04534 0.46 +0.6 907,610 + MPMX19_04534 0.46 +0.2 907,610 + MPMX19_04534 0.46 +0.3 907,611 - MPMX19_04534 0.46 +0.2 907,611 - MPMX19_04534 0.46 -1.6 907,611 - MPMX19_04534 0.46 +0.4 907,611 - MPMX19_04534 0.46 -0.1 907,611 - MPMX19_04534 0.46 -0.4 907,611 - MPMX19_04534 0.46 -0.5 907,611 - MPMX19_04534 0.46 -2.9 907,611 - MPMX19_04534 0.46 -0.7 907,611 - MPMX19_04534 0.46 -1.4 907,611 - MPMX19_04534 0.46 -1.3 907,611 - MPMX19_04534 0.46 -1.2 907,862 + MPMX19_04534 0.64 +0.0 907,862 + MPMX19_04534 0.64 -1.9 907,863 - MPMX19_04534 0.64 -0.6 907,863 - MPMX19_04534 0.64 -0.2 907,863 - MPMX19_04534 0.64 -0.9 907,970 + MPMX19_04534 0.71 +0.2 907,970 + MPMX19_04534 0.71 +0.0 907,970 + MPMX19_04534 0.71 +1.1 907,971 - MPMX19_04534 0.71 -0.3 907,971 - MPMX19_04534 0.71 +0.9 907,971 - MPMX19_04534 0.71 +1.3 908,258 + +0.2 908,258 + -2.2 908,258 + +0.2 908,258 + +0.6 908,259 - -0.8 908,366 - +0.1 908,366 - +0.6 908,366 - -0.3 908,430 + +1.0 908,430 + -1.0 908,431 - +0.6 908,431 - -2.6 908,562 + -0.4 908,874 + MPMX19_04535 0.39 -1.0 908,874 + MPMX19_04535 0.39 +0.0 908,874 + MPMX19_04535 0.39 +0.1 908,875 - MPMX19_04535 0.39 -0.8 909,184 - MPMX19_04535 0.77 -0.9 909,184 - MPMX19_04535 0.77 -0.5 909,184 - MPMX19_04535 0.77 -1.6 909,358 - -0.6 909,361 + -0.5 909,362 - -0.5
Or see this region's nucleotide sequence