Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04525

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04524 and MPMX19_04525 overlap by 4 nucleotidesMPMX19_04525 and MPMX19_04526 are separated by 25 nucleotidesMPMX19_04526 and MPMX19_04527 are separated by 21 nucleotides MPMX19_04524: MPMX19_04524 - hypothetical protein, at 896,631 to 898,397 _04524 MPMX19_04525: MPMX19_04525 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 898,394 to 899,461 _04525 MPMX19_04526: MPMX19_04526 - Short-chain-enoyl-CoA hydratase, at 899,487 to 900,320 _04526 MPMX19_04527: MPMX19_04527 - IS5 family transposase IS4811, at 900,342 to 901,292 _04527 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 897.405 kb on + strand, within MPMX19_04524at 897.405 kb on + strand, within MPMX19_04524at 897.405 kb on + strand, within MPMX19_04524at 897.405 kb on + strand, within MPMX19_04524at 897.406 kb on - strand, within MPMX19_04524at 897.406 kb on - strand, within MPMX19_04524at 897.406 kb on - strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.429 kb on + strand, within MPMX19_04524at 897.430 kb on - strand, within MPMX19_04524at 897.430 kb on - strand, within MPMX19_04524at 897.444 kb on + strand, within MPMX19_04524at 897.445 kb on - strand, within MPMX19_04524at 897.445 kb on - strand, within MPMX19_04524at 897.516 kb on + strand, within MPMX19_04524at 897.516 kb on + strand, within MPMX19_04524at 897.516 kb on + strand, within MPMX19_04524at 897.516 kb on + strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.517 kb on - strand, within MPMX19_04524at 897.630 kb on + strand, within MPMX19_04524at 897.702 kb on + strand, within MPMX19_04524at 897.702 kb on + strand, within MPMX19_04524at 897.703 kb on - strand, within MPMX19_04524at 897.703 kb on - strand, within MPMX19_04524at 897.703 kb on - strand, within MPMX19_04524at 897.709 kb on - strand, within MPMX19_04524at 897.709 kb on - strand, within MPMX19_04524at 897.768 kb on + strand, within MPMX19_04524at 897.768 kb on + strand, within MPMX19_04524at 897.768 kb on + strand, within MPMX19_04524at 897.768 kb on + strand, within MPMX19_04524at 897.768 kb on + strand, within MPMX19_04524at 897.769 kb on - strand, within MPMX19_04524at 897.769 kb on - strand, within MPMX19_04524at 897.819 kb on + strand, within MPMX19_04524at 897.820 kb on - strand, within MPMX19_04524at 897.820 kb on - strand, within MPMX19_04524at 897.820 kb on - strand, within MPMX19_04524at 897.820 kb on - strand, within MPMX19_04524at 897.820 kb on - strand, within MPMX19_04524at 897.869 kb on - strand, within MPMX19_04524at 897.927 kb on + strand, within MPMX19_04524at 897.927 kb on + strand, within MPMX19_04524at 897.928 kb on - strand, within MPMX19_04524at 897.928 kb on - strand, within MPMX19_04524at 897.928 kb on - strand, within MPMX19_04524at 897.951 kb on + strand, within MPMX19_04524at 897.951 kb on + strand, within MPMX19_04524at 897.951 kb on + strand, within MPMX19_04524at 897.951 kb on + strand, within MPMX19_04524at 897.952 kb on - strand, within MPMX19_04524at 897.952 kb on - strand, within MPMX19_04524at 897.952 kb on - strand, within MPMX19_04524at 897.952 kb on - strand, within MPMX19_04524at 897.952 kb on - strand, within MPMX19_04524at 897.952 kb on - strand, within MPMX19_04524at 898.008 kb on + strand, within MPMX19_04524at 898.008 kb on + strand, within MPMX19_04524at 898.008 kb on + strand, within MPMX19_04524at 898.009 kb on - strand, within MPMX19_04524at 898.009 kb on - strand, within MPMX19_04524at 898.009 kb on - strand, within MPMX19_04524at 898.009 kb on - strand, within MPMX19_04524at 898.233 kb on + strandat 898.233 kb on + strandat 898.233 kb on + strandat 898.234 kb on - strandat 898.234 kb on - strandat 898.234 kb on - strandat 898.234 kb on - strandat 898.234 kb on - strandat 898.234 kb on - strandat 898.234 kb on - strandat 898.257 kb on + strandat 898.257 kb on + strandat 898.258 kb on - strandat 898.258 kb on - strandat 898.258 kb on - strandat 898.439 kb on + strandat 898.439 kb on + strandat 898.439 kb on + strandat 898.439 kb on + strandat 898.440 kb on - strandat 898.440 kb on - strandat 898.440 kb on - strandat 898.440 kb on - strandat 898.440 kb on - strandat 898.440 kb on - strandat 898.449 kb on + strandat 898.450 kb on - strandat 898.655 kb on + strand, within MPMX19_04525at 898.655 kb on + strand, within MPMX19_04525at 898.655 kb on + strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.656 kb on - strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.970 kb on + strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 898.971 kb on - strand, within MPMX19_04525at 899.310 kb on - strand, within MPMX19_04525at 899.476 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.516 kb on + strandat 899.517 kb on - strandat 899.517 kb on - strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.246 kb on + strandat 900.247 kb on - strandat 900.247 kb on - strandat 900.262 kb on - strandat 900.262 kb on - strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.461 kb on - strand, within MPMX19_04527

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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897,405 + MPMX19_04524 0.44 -0.8
897,405 + MPMX19_04524 0.44 +0.1
897,405 + MPMX19_04524 0.44 +0.7
897,405 + MPMX19_04524 0.44 -1.4
897,406 - MPMX19_04524 0.44 -0.4
897,406 - MPMX19_04524 0.44 -0.1
897,406 - MPMX19_04524 0.44 -1.5
897,429 + MPMX19_04524 0.45 -0.3
897,429 + MPMX19_04524 0.45 +0.5
897,429 + MPMX19_04524 0.45 -0.5
897,429 + MPMX19_04524 0.45 -0.3
897,429 + MPMX19_04524 0.45 +0.1
897,429 + MPMX19_04524 0.45 +0.1
897,429 + MPMX19_04524 0.45 -0.3
897,430 - MPMX19_04524 0.45 +0.2
897,430 - MPMX19_04524 0.45 -1.0
897,444 + MPMX19_04524 0.46 -1.0
897,445 - MPMX19_04524 0.46 -1.7
897,445 - MPMX19_04524 0.46 +0.0
897,516 + MPMX19_04524 0.50 +1.9
897,516 + MPMX19_04524 0.50 -0.5
897,516 + MPMX19_04524 0.50 +0.1
897,516 + MPMX19_04524 0.50 -0.4
897,517 - MPMX19_04524 0.50 -0.8
897,517 - MPMX19_04524 0.50 +1.3
897,517 - MPMX19_04524 0.50 -0.3
897,517 - MPMX19_04524 0.50 -1.0
897,517 - MPMX19_04524 0.50 +0.6
897,517 - MPMX19_04524 0.50 -0.8
897,517 - MPMX19_04524 0.50 +0.7
897,630 + MPMX19_04524 0.57 -0.4
897,702 + MPMX19_04524 0.61 -0.1
897,702 + MPMX19_04524 0.61 -0.3
897,703 - MPMX19_04524 0.61 +1.0
897,703 - MPMX19_04524 0.61 -0.6
897,703 - MPMX19_04524 0.61 -0.9
897,709 - MPMX19_04524 0.61 +1.2
897,709 - MPMX19_04524 0.61 +0.3
897,768 + MPMX19_04524 0.64 +0.5
897,768 + MPMX19_04524 0.64 +0.6
897,768 + MPMX19_04524 0.64 +0.9
897,768 + MPMX19_04524 0.64 -0.1
897,768 + MPMX19_04524 0.64 +0.4
897,769 - MPMX19_04524 0.64 -0.2
897,769 - MPMX19_04524 0.64 +1.2
897,819 + MPMX19_04524 0.67 -1.0
897,820 - MPMX19_04524 0.67 +1.2
897,820 - MPMX19_04524 0.67 +0.2
897,820 - MPMX19_04524 0.67 -0.1
897,820 - MPMX19_04524 0.67 -0.5
897,820 - MPMX19_04524 0.67 -0.8
897,869 - MPMX19_04524 0.70 +3.8
897,927 + MPMX19_04524 0.73 +1.0
897,927 + MPMX19_04524 0.73 -0.7
897,928 - MPMX19_04524 0.73 -0.3
897,928 - MPMX19_04524 0.73 -1.1
897,928 - MPMX19_04524 0.73 -0.4
897,951 + MPMX19_04524 0.75 +0.5
897,951 + MPMX19_04524 0.75 -1.1
897,951 + MPMX19_04524 0.75 -0.0
897,951 + MPMX19_04524 0.75 -1.5
897,952 - MPMX19_04524 0.75 +1.0
897,952 - MPMX19_04524 0.75 +0.6
897,952 - MPMX19_04524 0.75 -0.7
897,952 - MPMX19_04524 0.75 +0.6
897,952 - MPMX19_04524 0.75 +0.3
897,952 - MPMX19_04524 0.75 -1.6
898,008 + MPMX19_04524 0.78 -1.0
898,008 + MPMX19_04524 0.78 +0.6
898,008 + MPMX19_04524 0.78 +0.3
898,009 - MPMX19_04524 0.78 -0.3
898,009 - MPMX19_04524 0.78 +0.0
898,009 - MPMX19_04524 0.78 -1.9
898,009 - MPMX19_04524 0.78 +0.4
898,233 + -0.9
898,233 + -0.1
898,233 + -1.0
898,234 - -1.3
898,234 - -0.3
898,234 - -0.8
898,234 - +0.2
898,234 - +0.4
898,234 - -1.3
898,234 - -0.4
898,257 + -0.2
898,257 + -0.1
898,258 - +1.5
898,258 - -0.9
898,258 - -0.6
898,439 + +1.4
898,439 + +0.4
898,439 + -1.0
898,439 + -0.4
898,440 - +0.3
898,440 - -0.3
898,440 - -0.8
898,440 - +0.2
898,440 - -1.9
898,440 - -1.3
898,449 + +0.6
898,450 - +0.0
898,655 + MPMX19_04525 0.24 -1.1
898,655 + MPMX19_04525 0.24 -1.9
898,655 + MPMX19_04525 0.24 +1.0
898,656 - MPMX19_04525 0.25 +0.0
898,656 - MPMX19_04525 0.25 -0.3
898,656 - MPMX19_04525 0.25 -0.1
898,656 - MPMX19_04525 0.25 +0.2
898,656 - MPMX19_04525 0.25 -1.5
898,656 - MPMX19_04525 0.25 +0.9
898,656 - MPMX19_04525 0.25 -1.1
898,970 + MPMX19_04525 0.54 -0.1
898,970 + MPMX19_04525 0.54 -0.7
898,970 + MPMX19_04525 0.54 -0.8
898,970 + MPMX19_04525 0.54 -0.6
898,970 + MPMX19_04525 0.54 -0.1
898,970 + MPMX19_04525 0.54 -0.4
898,970 + MPMX19_04525 0.54 +0.5
898,970 + MPMX19_04525 0.54 -0.8
898,970 + MPMX19_04525 0.54 +1.1
898,970 + MPMX19_04525 0.54 -0.8
898,970 + MPMX19_04525 0.54 -0.3
898,971 - MPMX19_04525 0.54 +0.2
898,971 - MPMX19_04525 0.54 -1.3
898,971 - MPMX19_04525 0.54 -2.1
898,971 - MPMX19_04525 0.54 +1.1
898,971 - MPMX19_04525 0.54 +0.6
898,971 - MPMX19_04525 0.54 -1.8
898,971 - MPMX19_04525 0.54 -2.1
898,971 - MPMX19_04525 0.54 -0.6
899,310 - MPMX19_04525 0.86 -0.1
899,476 + +0.3
899,516 + -1.3
899,516 + -0.5
899,516 + +1.2
899,516 + -0.4
899,517 - -1.7
899,517 - +0.2
900,246 + -0.4
900,246 + +0.4
900,246 + -1.6
900,246 + +0.2
900,247 - +0.6
900,247 - -1.6
900,262 - -0.1
900,262 - -2.6
900,397 + -1.5
900,397 + -1.2
900,397 + +0.1
900,398 - +0.9
900,398 - +0.8
900,398 - -0.0
900,398 - +0.6
900,398 - -0.6
900,398 - -0.4
900,398 - +0.0
900,461 - MPMX19_04527 0.13 +0.2

Or see this region's nucleotide sequence