Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04512

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04511 and MPMX19_04512 are separated by 164 nucleotidesMPMX19_04512 and MPMX19_04513 are separated by 11 nucleotides MPMX19_04511: MPMX19_04511 - Phosphoglycerate transport regulatory protein PgtC, at 880,886 to 882,241 _04511 MPMX19_04512: MPMX19_04512 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 882,406 to 883,761 _04512 MPMX19_04513: MPMX19_04513 - Adaptive-response sensory-kinase SasA, at 883,773 to 886,277 _04513 Position (kb) 882 883 884Strain fitness (log2 ratio) -2 -1 0 1 2at 881.490 kb on + strand, within MPMX19_04511at 881.619 kb on + strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.620 kb on - strand, within MPMX19_04511at 881.742 kb on + strand, within MPMX19_04511at 881.742 kb on + strand, within MPMX19_04511at 881.742 kb on + strand, within MPMX19_04511at 881.742 kb on + strand, within MPMX19_04511at 881.742 kb on + strand, within MPMX19_04511at 881.742 kb on + strand, within MPMX19_04511at 881.743 kb on - strand, within MPMX19_04511at 881.743 kb on - strand, within MPMX19_04511at 881.743 kb on - strand, within MPMX19_04511at 881.745 kb on + strand, within MPMX19_04511at 881.745 kb on + strand, within MPMX19_04511at 881.745 kb on + strand, within MPMX19_04511at 881.745 kb on + strand, within MPMX19_04511at 881.745 kb on + strand, within MPMX19_04511at 881.805 kb on + strand, within MPMX19_04511at 881.805 kb on + strand, within MPMX19_04511at 881.805 kb on + strand, within MPMX19_04511at 881.806 kb on - strand, within MPMX19_04511at 881.806 kb on - strand, within MPMX19_04511at 881.806 kb on - strand, within MPMX19_04511at 881.806 kb on - strand, within MPMX19_04511at 881.806 kb on - strand, within MPMX19_04511at 881.806 kb on - strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.853 kb on + strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.854 kb on - strand, within MPMX19_04511at 881.922 kb on + strand, within MPMX19_04511at 881.922 kb on + strand, within MPMX19_04511at 881.922 kb on + strand, within MPMX19_04511at 881.922 kb on + strand, within MPMX19_04511at 881.922 kb on + strand, within MPMX19_04511at 881.922 kb on + strand, within MPMX19_04511at 881.923 kb on - strand, within MPMX19_04511at 881.923 kb on - strand, within MPMX19_04511at 881.923 kb on - strand, within MPMX19_04511at 881.923 kb on - strand, within MPMX19_04511at 881.923 kb on - strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.021 kb on + strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.022 kb on - strand, within MPMX19_04511at 882.087 kb on + strand, within MPMX19_04511at 882.087 kb on + strand, within MPMX19_04511at 882.087 kb on + strand, within MPMX19_04511at 882.087 kb on + strand, within MPMX19_04511at 882.088 kb on - strand, within MPMX19_04511at 882.088 kb on - strand, within MPMX19_04511at 882.088 kb on - strand, within MPMX19_04511at 882.088 kb on - strand, within MPMX19_04511at 882.375 kb on + strandat 882.376 kb on - strandat 882.459 kb on - strandat 882.459 kb on - strandat 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.866 kb on + strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 882.867 kb on - strand, within MPMX19_04512at 883.071 kb on - strand, within MPMX19_04512at 883.071 kb on - strand, within MPMX19_04512at 883.071 kb on - strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.475 kb on + strand, within MPMX19_04512at 883.476 kb on - strand, within MPMX19_04512at 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.864 kb on + strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 883.865 kb on - strandat 884.401 kb on + strand, within MPMX19_04513at 884.401 kb on + strand, within MPMX19_04513at 884.401 kb on + strand, within MPMX19_04513at 884.401 kb on + strand, within MPMX19_04513at 884.402 kb on - strand, within MPMX19_04513

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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881,490 + MPMX19_04511 0.45 +0.2
881,619 + MPMX19_04511 0.54 -1.4
881,620 - MPMX19_04511 0.54 +0.3
881,620 - MPMX19_04511 0.54 -0.6
881,620 - MPMX19_04511 0.54 +0.1
881,620 - MPMX19_04511 0.54 -0.8
881,620 - MPMX19_04511 0.54 +0.9
881,620 - MPMX19_04511 0.54 +0.0
881,620 - MPMX19_04511 0.54 -1.5
881,742 + MPMX19_04511 0.63 +2.0
881,742 + MPMX19_04511 0.63 -0.3
881,742 + MPMX19_04511 0.63 -2.3
881,742 + MPMX19_04511 0.63 -1.1
881,742 + MPMX19_04511 0.63 -0.4
881,742 + MPMX19_04511 0.63 +0.4
881,743 - MPMX19_04511 0.63 -0.6
881,743 - MPMX19_04511 0.63 -0.9
881,743 - MPMX19_04511 0.63 -1.3
881,745 + MPMX19_04511 0.63 -1.4
881,745 + MPMX19_04511 0.63 -1.0
881,745 + MPMX19_04511 0.63 +0.7
881,745 + MPMX19_04511 0.63 -1.6
881,745 + MPMX19_04511 0.63 -0.4
881,805 + MPMX19_04511 0.68 +0.9
881,805 + MPMX19_04511 0.68 -0.7
881,805 + MPMX19_04511 0.68 -1.5
881,806 - MPMX19_04511 0.68 +0.1
881,806 - MPMX19_04511 0.68 +0.2
881,806 - MPMX19_04511 0.68 -1.1
881,806 - MPMX19_04511 0.68 +1.2
881,806 - MPMX19_04511 0.68 +0.4
881,806 - MPMX19_04511 0.68 -0.6
881,853 + MPMX19_04511 0.71 -0.9
881,853 + MPMX19_04511 0.71 +0.2
881,853 + MPMX19_04511 0.71 -0.6
881,853 + MPMX19_04511 0.71 +0.0
881,853 + MPMX19_04511 0.71 +0.9
881,853 + MPMX19_04511 0.71 +0.1
881,853 + MPMX19_04511 0.71 -0.0
881,853 + MPMX19_04511 0.71 +0.2
881,853 + MPMX19_04511 0.71 -0.1
881,853 + MPMX19_04511 0.71 +0.1
881,853 + MPMX19_04511 0.71 -1.0
881,853 + MPMX19_04511 0.71 -0.5
881,853 + MPMX19_04511 0.71 +0.2
881,853 + MPMX19_04511 0.71 -0.1
881,853 + MPMX19_04511 0.71 +0.5
881,853 + MPMX19_04511 0.71 +0.2
881,853 + MPMX19_04511 0.71 +1.4
881,854 - MPMX19_04511 0.71 -1.1
881,854 - MPMX19_04511 0.71 +0.0
881,854 - MPMX19_04511 0.71 -0.4
881,854 - MPMX19_04511 0.71 +0.4
881,854 - MPMX19_04511 0.71 -0.7
881,854 - MPMX19_04511 0.71 -0.1
881,854 - MPMX19_04511 0.71 -2.7
881,854 - MPMX19_04511 0.71 -1.0
881,854 - MPMX19_04511 0.71 -2.5
881,854 - MPMX19_04511 0.71 -0.4
881,854 - MPMX19_04511 0.71 +0.2
881,854 - MPMX19_04511 0.71 -1.2
881,854 - MPMX19_04511 0.71 -0.5
881,854 - MPMX19_04511 0.71 -0.9
881,854 - MPMX19_04511 0.71 -0.5
881,854 - MPMX19_04511 0.71 -1.4
881,854 - MPMX19_04511 0.71 -0.8
881,854 - MPMX19_04511 0.71 -1.1
881,854 - MPMX19_04511 0.71 -0.2
881,854 - MPMX19_04511 0.71 +1.8
881,854 - MPMX19_04511 0.71 -0.5
881,854 - MPMX19_04511 0.71 +0.5
881,854 - MPMX19_04511 0.71 -0.6
881,854 - MPMX19_04511 0.71 -1.6
881,854 - MPMX19_04511 0.71 +0.6
881,854 - MPMX19_04511 0.71 -0.3
881,854 - MPMX19_04511 0.71 +0.5
881,854 - MPMX19_04511 0.71 +0.1
881,922 + MPMX19_04511 0.76 -1.1
881,922 + MPMX19_04511 0.76 +1.6
881,922 + MPMX19_04511 0.76 +0.7
881,922 + MPMX19_04511 0.76 +0.8
881,922 + MPMX19_04511 0.76 -0.5
881,922 + MPMX19_04511 0.76 -1.6
881,923 - MPMX19_04511 0.76 -1.6
881,923 - MPMX19_04511 0.76 +1.1
881,923 - MPMX19_04511 0.76 -0.6
881,923 - MPMX19_04511 0.76 -1.6
881,923 - MPMX19_04511 0.76 +0.6
882,021 + MPMX19_04511 0.84 +0.3
882,021 + MPMX19_04511 0.84 -0.6
882,021 + MPMX19_04511 0.84 -0.7
882,021 + MPMX19_04511 0.84 +0.3
882,021 + MPMX19_04511 0.84 -1.6
882,021 + MPMX19_04511 0.84 -0.3
882,021 + MPMX19_04511 0.84 +0.2
882,021 + MPMX19_04511 0.84 +0.0
882,021 + MPMX19_04511 0.84 +0.1
882,022 - MPMX19_04511 0.84 -1.5
882,022 - MPMX19_04511 0.84 -0.8
882,022 - MPMX19_04511 0.84 +0.0
882,022 - MPMX19_04511 0.84 -0.5
882,022 - MPMX19_04511 0.84 -0.8
882,022 - MPMX19_04511 0.84 +1.4
882,022 - MPMX19_04511 0.84 -0.3
882,022 - MPMX19_04511 0.84 -0.9
882,022 - MPMX19_04511 0.84 +1.4
882,087 + MPMX19_04511 0.89 -2.0
882,087 + MPMX19_04511 0.89 -0.3
882,087 + MPMX19_04511 0.89 -0.0
882,087 + MPMX19_04511 0.89 +0.8
882,088 - MPMX19_04511 0.89 +0.7
882,088 - MPMX19_04511 0.89 -0.9
882,088 - MPMX19_04511 0.89 +0.9
882,088 - MPMX19_04511 0.89 +0.6
882,375 + +0.1
882,376 - -1.3
882,459 - +1.6
882,459 - -1.1
882,866 + MPMX19_04512 0.34 -0.2
882,866 + MPMX19_04512 0.34 -0.1
882,866 + MPMX19_04512 0.34 +0.0
882,866 + MPMX19_04512 0.34 -2.0
882,866 + MPMX19_04512 0.34 -1.3
882,866 + MPMX19_04512 0.34 -0.7
882,866 + MPMX19_04512 0.34 +0.0
882,866 + MPMX19_04512 0.34 -0.7
882,866 + MPMX19_04512 0.34 -0.6
882,866 + MPMX19_04512 0.34 -0.6
882,866 + MPMX19_04512 0.34 -1.7
882,867 - MPMX19_04512 0.34 +0.4
882,867 - MPMX19_04512 0.34 -0.1
882,867 - MPMX19_04512 0.34 +0.9
882,867 - MPMX19_04512 0.34 -0.8
882,867 - MPMX19_04512 0.34 +0.2
882,867 - MPMX19_04512 0.34 -0.9
882,867 - MPMX19_04512 0.34 +0.6
882,867 - MPMX19_04512 0.34 -1.4
883,071 - MPMX19_04512 0.49 -0.5
883,071 - MPMX19_04512 0.49 +0.7
883,071 - MPMX19_04512 0.49 -2.1
883,475 + MPMX19_04512 0.79 -1.5
883,475 + MPMX19_04512 0.79 -0.2
883,475 + MPMX19_04512 0.79 -0.1
883,475 + MPMX19_04512 0.79 -0.9
883,476 - MPMX19_04512 0.79 -0.0
883,864 + -0.8
883,864 + -0.8
883,864 + -0.8
883,864 + -2.3
883,864 + -0.1
883,864 + -1.1
883,864 + -0.4
883,864 + -0.6
883,864 + +1.4
883,864 + -0.6
883,864 + -0.0
883,865 - -0.2
883,865 - -0.1
883,865 - -1.4
883,865 - +0.2
883,865 - -1.1
883,865 - -1.7
883,865 - +0.1
883,865 - -0.1
883,865 - +1.2
883,865 - -0.7
884,401 + MPMX19_04513 0.25 -0.4
884,401 + MPMX19_04513 0.25 +1.1
884,401 + MPMX19_04513 0.25 +0.9
884,401 + MPMX19_04513 0.25 +0.1
884,402 - MPMX19_04513 0.25 -0.1

Or see this region's nucleotide sequence